PI0001404 (gene) Melon (PI 482460) v1

Overview
NamePI0001404
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Locationchr10: 1311212 .. 1311865 (-)
RNA-Seq ExpressionPI0001404
SyntenyPI0001404
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGATCATCCACCTGTCTCAAATCCTTCTTCATCCTTTGATCACTCTGATTCTGATTCGAATGAAAGGGATAATGTTTGTCTGGCTACACTATTTCGTCGAGCTTATTTTTCAACATCCTTTAAAATTTCTAATGAGCGTGTGTCTCCGGTTGTTCATCCTTCCTCATCTAAACCATCATAATCTATTGATACTGAGACTATTTCTTTAGATATTGCTTCTGTTAACACATTTAGCCCTAAATCACCTTCTTTAATGAGAGAACAACCTGTTTCTTCTCAAGATGTGCATCCAAATTCTGCAGAATCTGATCCATTACCATCGACTGTTGAACCTAATATTCCTCCTTGTTCCACCTCTCAGGAAGTTCCTTCTGAGAAAGTTTCACCTCCTTTTATTCCAAATACTGAGTTTACCGGTTCTAATGAGCCTCCAGTTCCTTCTTTTTCCTCGTCTATCTCTCCTCCATGTCCTGGTCATGAAAATATTGTTCCTCTTCCTAAAAAACCCAAAGTTTCTTCCAAAAGACCAAGAGTAATAACTATCAAAGCTGGTCGAAAAAAGTTGCTCCTCAATATTCCATCTGTTCCCATTGATGGCATCTCTTTTCATCTTGAAGAGAATGTCCAAAGATGGAAATATGTTGTGTAA

mRNA sequence

ATGCATGATCATCCACCTGTCTCAAATCCTTCTTCATCCTTTGATCACTCTGATTCTGATTCGAATGAAAGGGATAATGTTTGTCTGGCTACACTATTTCGTCGAGCTTATTTTTCAACATCCTTTAAAATTTCTAATGAGCATATTGCTTCTGTTAACACATTTAGCCCTAAATCACCTTCTTTAATGAGAGAACAACCTGTTTCTTCTCAAGATGTGCATCCAAATTCTGCAGAATCTGATCCATTACCATCGACTGTTGAACCTAATATTCCTCCTTGTTCCACCTCTCAGGAAGTTCCTTCTGAGAAAGTTTCACCTCCTTTTATTCCAAATACTGAGTTTACCGGTTCTAATGAGCCTCCAGTTCCTTCTTTTTCCTCGTCTATCTCTCCTCCATGTCCTGGTCATGAAAATATTGTTCCTCTTCCTAAAAAACCCAAAGTTTCTTCCAAAAGACCAAGAGTAATAACTATCAAAGCTGGTCGAAAAAAGTTGCTCCTCAATATTCCATCTGTTCCCATTGATGGCATCTCTTTTCATCTTGAAGAGAATGTCCAAAGATGGAAATATGTTGTGTAA

Coding sequence (CDS)

ATGCATGATCATCCACCTGTCTCAAATCCTTCTTCATCCTTTGATCACTCTGATTCTGATTCGAATGAAAGGGATAATGTTTGTCTGGCTACACTATTTCGTCGAGCTTATTTTTCAACATCCTTTAAAATTTCTAATGAGCATATTGCTTCTGTTAACACATTTAGCCCTAAATCACCTTCTTTAATGAGAGAACAACCTGTTTCTTCTCAAGATGTGCATCCAAATTCTGCAGAATCTGATCCATTACCATCGACTGTTGAACCTAATATTCCTCCTTGTTCCACCTCTCAGGAAGTTCCTTCTGAGAAAGTTTCACCTCCTTTTATTCCAAATACTGAGTTTACCGGTTCTAATGAGCCTCCAGTTCCTTCTTTTTCCTCGTCTATCTCTCCTCCATGTCCTGGTCATGAAAATATTGTTCCTCTTCCTAAAAAACCCAAAGTTTCTTCCAAAAGACCAAGAGTAATAACTATCAAAGCTGGTCGAAAAAAGTTGCTCCTCAATATTCCATCTGTTCCCATTGATGGCATCTCTTTTCATCTTGAAGAGAATGTCCAAAGATGGAAATATGTTGTGTAA

Protein sequence

MHDHPPVSNPSSSFDHSDSDSNERDNVCLATLFRRAYFSTSFKISNEHIASVNTFSPKSPSLMREQPVSSQDVHPNSAESDPLPSTVEPNIPPCSTSQEVPSEKVSPPFIPNTEFTGSNEPPVPSFSSSISPPCPGHENIVPLPKKPKVSSKRPRVITIKAGRKKLLLNIPSVPIDGISFHLEENVQRWKYVV
Homology
BLAST of PI0001404 vs. ExPASy TrEMBL
Match: A0A5A7SM94 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00110 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.2e-11
Identity = 76/193 (39.38%), Postives = 99/193 (51.30%), Query Frame = 0

Query: 10  PSSSFDH-SDSDSNERDNVCLATLFRRAYFSTSFKISNEHIASVNTFSPKSPSLMREQPV 69
           PS S  H  + DS+E+ +V LA L ++ +          ++AS  + +P   S   ++  
Sbjct: 150 PSVSKTHILNMDSDEQYDVPLARLLKKGFVL--------NVASTKSVNP-IISARSQESS 209

Query: 70  SSQDVH------PNSAESDPLPSTVEPNIPPCSTSQEVP--SEKVSPPFIPNTEFTGSNE 129
           SS+DV        ++++ +P PS   P I     + E P   E V P    NT+ T   E
Sbjct: 210 SSEDVFIPTPGLYHASDQEPSPSQHSPPIRNDVPTVETPIDDENVDP---TNTDATNIVE 269

Query: 130 PPVPSFSSSISPPCPGHENIVPLPKKPKVSSKRPRVITIKAGRKKLLLNIPSVPIDGISF 189
           P V       +   PG    V  PK  K    R R IT K GRKK+ LNIPSVPIDGISF
Sbjct: 270 PDVYDDFQLETQQSPG----VSRPKGKKFQQNR-RNITTKTGRKKIPLNIPSVPIDGISF 325

Query: 190 HLEENVQRWKYVV 194
           HLEENVQRWKYVV
Sbjct: 330 HLEENVQRWKYVV 325

BLAST of PI0001404 vs. ExPASy TrEMBL
Match: A0A5A7SWH6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G003740 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.6e-10
Identity = 73/202 (36.14%), Postives = 97/202 (48.02%), Query Frame = 0

Query: 5   PPVSNPSSSFDHSDSD----SNERDNVCLATLFRRAYFSTSFKISNEHIASVNTFSPKSP 64
           PP      SF+ S +D    S++ DNV LA L ++             +A+ + F+ KS 
Sbjct: 41  PPQKPYKLSFEKSHADIPTNSDDLDNVPLALLLKK-------------VAAPDVFTEKS- 100

Query: 65  SLMREQPVSSQDVHPNSAESDPLPSTVEPNIPPCSTSQEVPSEKVSPPFIPNTEFTGSNE 124
                 PV S  VH   + S        P +   S+ +  PS    P   P T+   SN+
Sbjct: 101 ----ADPVLS--VHSQESSSSKGVFVPTPGLRQTSSVEPGPSHYPIPIQSPITDNIASND 160

Query: 125 PPVPSFSSSISPPCPGHENIV---------PLPKKPKVSSKRPRVITIKAGRKKLLLNIP 184
           P        + P   G+E++V           P + KV   R R IT K GRKK+ LNIP
Sbjct: 161 PHAAPNEDVVEP--VGNEDVVKPVDTNDHNDKPSRKKVLQNR-RNITTKTGRKKVPLNIP 219

Query: 185 SVPIDGISFHLEENVQRWKYVV 194
           SVPIDGISFHLEE+VQRWK+VV
Sbjct: 221 SVPIDGISFHLEESVQRWKFVV 219

BLAST of PI0001404 vs. ExPASy TrEMBL
Match: A0A5A7VFF7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00670 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.0e-09
Identity = 73/197 (37.06%), Postives = 102/197 (51.78%), Query Frame = 0

Query: 10  PSSSFDH-SDSDSNERDNVCLATLFRRAY-FSTSFKISNEHIASVNT-FSPKSPSLMR-- 69
           P+ S DH S  DS++ D+V L  L ++        K S +H  S +T  S  S  ++   
Sbjct: 82  PTVSEDHLSTMDSDDLDDVSLTRLVKKVVALDVVPKKSADHALSDHTQESSSSEGVLSPI 141

Query: 70  EQPVSSQDVH--PNSAESDPLPSTVEPNIPPCSTSQEVPSEKVS--PPFIPNTEFTGSNE 129
           +  V   D H  P +A S P+  T        + S+E P + V    P  P     G + 
Sbjct: 142 QDIVDPYDSHAAPPAASSLPVGRTE-------ARSEETPFDNVDDVEPVAP-----GDHN 201

Query: 130 PPVPSFSSSISPPCPGHENIVPLPKKPKVSSKR----PRVITIKAGRKKLLLNIPSVPID 189
             VP  + ++ P  P  +   P+P +PK + K+     R IT K GRKK+ LNIPSVPI+
Sbjct: 202 DEVP-VADTVDPSAP--QETPPVPTEPKPARKKGQQIRRNITTKVGRKKIPLNIPSVPIN 261

Query: 190 GISFHLEENVQRWKYVV 194
           GISFHLEENV+RWK+VV
Sbjct: 262 GISFHLEENVKRWKFVV 263

BLAST of PI0001404 vs. ExPASy TrEMBL
Match: A0A5D3D6K3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G00770 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.8e-09
Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 0

Query: 113 TEFTGSNEPPVPSFSSSISPPCPGHENIVPLPKKPKVSSKRP-RVITIKAGRKKLLLNIP 172
           TE    + PP+      I+P C G       PK PK  +++  R +T K GRKK+  N+P
Sbjct: 129 TEIPSEDIPPLT--DDPIAPSCEGRPKSPKDPKHPKRKTQQARRSVTTKTGRKKIPANVP 188

Query: 173 SVPIDGISFHLEENVQRWKYVV 194
           SVPIDG+SFH E+NVQRWK+V+
Sbjct: 189 SVPIDGVSFHHEDNVQRWKFVM 208

BLAST of PI0001404 vs. ExPASy TrEMBL
Match: A0A5D3DF71 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00540 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.8e-09
Identity = 65/194 (33.51%), Postives = 93/194 (47.94%), Query Frame = 0

Query: 10  PSSSFDH---------SDSDSNERDNVCLATLFRRAYFSTSFKISNE-HIASVNTFSPKS 69
           P+SS  H         SD DSN+ D+V LA L +         +SN+ H+   ++F  + 
Sbjct: 79  PASSVAHVPRVPATNVSDMDSNDWDDVPLAQLLKNTLIP---DVSNKLHVNPPSSFHSQE 138

Query: 70  PSLMREQPVSSQDVHPNSAESDPLPSTVEPNIPPCSTSQEVPSEKVSPPFIPNTEFTGSN 129
               +   + +  + P+++   P PS   P   P   S  V + +  P  +P     G +
Sbjct: 139 SLSTKGVFIPTLGI-PSTSNVQPGPSAHSPPASPTLFS-SVDAHQSIPDVVPEVPLNGDD 198

Query: 130 EPPVPSFSSSISPPCPGHENIVPLPKKPKVSSKRPRVITIKAGRKKLLLNIPSVPIDGIS 189
            P VP  S+ I         +   P + K   KR   IT K  RKK+  NIPSVPIDGIS
Sbjct: 199 NPVVPPASTDIP--------VASKPVEKKAQQKRCN-ITTKTDRKKIPPNIPSVPIDGIS 258

Query: 190 FHLEENVQRWKYVV 194
           FH EE+VQRWK+V+
Sbjct: 259 FHHEESVQRWKFVL 258

BLAST of PI0001404 vs. NCBI nr
Match: KAA0031748.1 (uncharacterized protein E6C27_scaffold506G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-10
Identity = 76/193 (39.38%), Postives = 99/193 (51.30%), Query Frame = 0

Query: 10  PSSSFDH-SDSDSNERDNVCLATLFRRAYFSTSFKISNEHIASVNTFSPKSPSLMREQPV 69
           PS S  H  + DS+E+ +V LA L ++ +          ++AS  + +P   S   ++  
Sbjct: 150 PSVSKTHILNMDSDEQYDVPLARLLKKGFVL--------NVASTKSVNP-IISARSQESS 209

Query: 70  SSQDVH------PNSAESDPLPSTVEPNIPPCSTSQEVP--SEKVSPPFIPNTEFTGSNE 129
           SS+DV        ++++ +P PS   P I     + E P   E V P    NT+ T   E
Sbjct: 210 SSEDVFIPTPGLYHASDQEPSPSQHSPPIRNDVPTVETPIDDENVDP---TNTDATNIVE 269

Query: 130 PPVPSFSSSISPPCPGHENIVPLPKKPKVSSKRPRVITIKAGRKKLLLNIPSVPIDGISF 189
           P V       +   PG    V  PK  K    R R IT K GRKK+ LNIPSVPIDGISF
Sbjct: 270 PDVYDDFQLETQQSPG----VSRPKGKKFQQNR-RNITTKTGRKKIPLNIPSVPIDGISF 325

Query: 190 HLEENVQRWKYVV 194
           HLEENVQRWKYVV
Sbjct: 330 HLEENVQRWKYVV 325

BLAST of PI0001404 vs. NCBI nr
Match: KAA0035674.1 (uncharacterized protein E6C27_scaffold285G003740 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 7.4e-10
Identity = 73/202 (36.14%), Postives = 97/202 (48.02%), Query Frame = 0

Query: 5   PPVSNPSSSFDHSDSD----SNERDNVCLATLFRRAYFSTSFKISNEHIASVNTFSPKSP 64
           PP      SF+ S +D    S++ DNV LA L ++             +A+ + F+ KS 
Sbjct: 41  PPQKPYKLSFEKSHADIPTNSDDLDNVPLALLLKK-------------VAAPDVFTEKS- 100

Query: 65  SLMREQPVSSQDVHPNSAESDPLPSTVEPNIPPCSTSQEVPSEKVSPPFIPNTEFTGSNE 124
                 PV S  VH   + S        P +   S+ +  PS    P   P T+   SN+
Sbjct: 101 ----ADPVLS--VHSQESSSSKGVFVPTPGLRQTSSVEPGPSHYPIPIQSPITDNIASND 160

Query: 125 PPVPSFSSSISPPCPGHENIV---------PLPKKPKVSSKRPRVITIKAGRKKLLLNIP 184
           P        + P   G+E++V           P + KV   R R IT K GRKK+ LNIP
Sbjct: 161 PHAAPNEDVVEP--VGNEDVVKPVDTNDHNDKPSRKKVLQNR-RNITTKTGRKKVPLNIP 219

Query: 185 SVPIDGISFHLEENVQRWKYVV 194
           SVPIDGISFHLEE+VQRWK+VV
Sbjct: 221 SVPIDGISFHLEESVQRWKFVV 219

BLAST of PI0001404 vs. NCBI nr
Match: KAA0066044.1 (uncharacterized protein E6C27_scaffold21G00170 [Cucumis melo var. makuwa] >TYJ99852.1 uncharacterized protein E5676_scaffold446G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 6.3e-09
Identity = 73/197 (37.06%), Postives = 102/197 (51.78%), Query Frame = 0

Query: 10  PSSSFDH-SDSDSNERDNVCLATLFRRAY-FSTSFKISNEHIASVNT-FSPKSPSLMR-- 69
           P+ S DH S  DS++ D+V L  L ++        K S +H  S +T  S  S  ++   
Sbjct: 82  PTVSEDHLSTMDSDDLDDVSLTRLVKKVVALDVVPKKSADHALSDHTQESSSSEGVLSPI 141

Query: 70  EQPVSSQDVH--PNSAESDPLPSTVEPNIPPCSTSQEVPSEKVS--PPFIPNTEFTGSNE 129
           +  V   D H  P +A S P+  T        + S+E P + V    P  P     G + 
Sbjct: 142 QDIVDPYDSHAAPPAASSLPVGRTE-------ARSEETPFDNVDDVEPVAP-----GDHN 201

Query: 130 PPVPSFSSSISPPCPGHENIVPLPKKPKVSSKR----PRVITIKAGRKKLLLNIPSVPID 189
             VP  + ++ P  P  +   P+P +PK + K+     R IT K GRKK+ LNIPSVPI+
Sbjct: 202 DEVP-VADTVDPSAP--QETPPVPTEPKPARKKGQQIRRNITTKVGRKKIPLNIPSVPIN 261

Query: 190 GISFHLEENVQRWKYVV 194
           GISFHLEENV+RWK+VV
Sbjct: 262 GISFHLEENVKRWKFVV 263

BLAST of PI0001404 vs. NCBI nr
Match: TYK22185.1 (uncharacterized protein E5676_scaffold333G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-08
Identity = 65/194 (33.51%), Postives = 93/194 (47.94%), Query Frame = 0

Query: 10  PSSSFDH---------SDSDSNERDNVCLATLFRRAYFSTSFKISNE-HIASVNTFSPKS 69
           P+SS  H         SD DSN+ D+V LA L +         +SN+ H+   ++F  + 
Sbjct: 79  PASSVAHVPRVPATNVSDMDSNDWDDVPLAQLLKNTLIP---DVSNKLHVNPPSSFHSQE 138

Query: 70  PSLMREQPVSSQDVHPNSAESDPLPSTVEPNIPPCSTSQEVPSEKVSPPFIPNTEFTGSN 129
               +   + +  + P+++   P PS   P   P   S  V + +  P  +P     G +
Sbjct: 139 SLSTKGVFIPTLGI-PSTSNVQPGPSAHSPPASPTLFS-SVDAHQSIPDVVPEVPLNGDD 198

Query: 130 EPPVPSFSSSISPPCPGHENIVPLPKKPKVSSKRPRVITIKAGRKKLLLNIPSVPIDGIS 189
            P VP  S+ I         +   P + K   KR   IT K  RKK+  NIPSVPIDGIS
Sbjct: 199 NPVVPPASTDIP--------VASKPVEKKAQQKRCN-ITTKTDRKKIPPNIPSVPIDGIS 258

Query: 190 FHLEENVQRWKYVV 194
           FH EE+VQRWK+V+
Sbjct: 259 FHHEESVQRWKFVL 258

BLAST of PI0001404 vs. NCBI nr
Match: KAA0053559.1 (uncharacterized protein E6C27_scaffold190G001250 [Cucumis melo var. makuwa] >TYK19152.1 uncharacterized protein E5676_scaffold522G00770 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-08
Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 0

Query: 113 TEFTGSNEPPVPSFSSSISPPCPGHENIVPLPKKPKVSSKRP-RVITIKAGRKKLLLNIP 172
           TE    + PP+      I+P C G       PK PK  +++  R +T K GRKK+  N+P
Sbjct: 129 TEIPSEDIPPLT--DDPIAPSCEGRPKSPKDPKHPKRKTQQARRSVTTKTGRKKIPANVP 188

Query: 173 SVPIDGISFHLEENVQRWKYVV 194
           SVPIDG+SFH E+NVQRWK+V+
Sbjct: 189 SVPIDGVSFHHEDNVQRWKFVM 208

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SM947.2e-1139.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SWH63.6e-1036.14Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VFF73.0e-0937.06Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3D6K36.8e-0946.34Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DF716.8e-0933.51Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0031748.11.5e-1039.38uncharacterized protein E6C27_scaffold506G00110 [Cucumis melo var. makuwa][more]
KAA0035674.17.4e-1036.14uncharacterized protein E6C27_scaffold285G003740 [Cucumis melo var. makuwa][more]
KAA0066044.16.3e-0937.06uncharacterized protein E6C27_scaffold21G00170 [Cucumis melo var. makuwa] >TYJ99... [more]
TYK22185.11.4e-0833.51uncharacterized protein E5676_scaffold333G00540 [Cucumis melo var. makuwa][more]
KAA0053559.11.4e-0846.34uncharacterized protein E6C27_scaffold190G001250 [Cucumis melo var. makuwa] >TYK... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..154
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0001404.1PI0001404.1mRNA