PI0001377 (gene) Melon (PI 482460) v1

Overview


Name	PI0001377
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr11: 21954336 .. 21955433 (+)
RNA-Seq Expression	PI0001377
Synteny	PI0001377

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAAAAAGGTAACTGAAGGAAGAACAAGAGTTAGTGAACGATTGAGAGCTGCTGGAATTAGTGGTGGAAAAAAACAAGCAAACAAAGACCCAATCGATATCACAAGTGAAGAAGAGGTATATGTTTTTAATTTCTATGTACAATGATTTTGAAAACGAAAACACTAACAATATTTGCACAATAGAAAACGGAAGACACAATAGTTGGATCATTGGTAGCAAAACGTGCTACCATTAGAATTCCAAAAAAAAAAAAAAGAGCGAGATGAAGTTAGAAAAGAAGTTAATGATCCTCCAAAGAAAACAAGGACCAAAAGCATGATAATACAACTTTATCTTCAAATTCCATTTAAACAATATGAGTTTCAATTGATTAAATGAATGTGCAGGTTGCAAAAAGGACACCAGAAAAGAAGAAAAAGCAAATAAAGGATGTAGAGGAAGAAAATGATGAGGAAGACAAGCTAAAAGAGAGTAATGGAGGGGAAGAAGACAATACAAACAAAGAAACAAATGAAAATGATGATGAGCAAACAAATAACAATGAAGAGAAATTAGCGTCAGATGAGGAATCATCAAATGATGAGGGAACCAAGAAGAAGAAAACTCGCAAAGGAAAGAAGGTAACATTACATAACAAATGAAAAAAAAATTATATCATAAGTGGCTAGTAACTAATATTTCTAAATTATAGGTATCAAGTGTGAAAGATAAAGAAAAGGACAAGAAGTCAACAAAGCAAAAAGGCAAGATACCAATAATACAAGAGAGACAAGAGGTATCCTTATTACAATACACAGTATTTGACATTTGTTTTATAATATCATTTACTTTTGGTCAGTATGTAGTTAAAAAATACAATTGTATTTGGTATTTCTAACTGCATATTAAATAGCTAGTTGTTTAAAACCTCCCTTGTTGAAGTTTAAAGTACACATGTTGAATATATATTGGCAAGCTATGTTTAGTACAATACAAAGTATTTGACATTTGCCTAGTACATAATCTGAAATTAGTTTATGGTGGATTGTGAATTTCTTTGATTAATGTTTGTTTGAAATTTGAAATGTGTCTATGTATGTATAGATACAGTAG

mRNA sequence

ATGAATAAAAAGGTAACTGAAGGAAGAACAAGAGTTAGTGAACGATTGAGAGCTGCTGGAATTAGTGGTGGAAAAAAACAAGCAAACAAAGACCCAATCGATATCACAAGTGAAGAAGAGGTTGCAAAAAGGACACCAGAAAAGAAGAAAAAGCAAATAAAGGATGTAGAGGAAGAAAATGATGAGGAAGACAAGCTAAAAGAGAGTAATGGAGGGGAAGAAGACAATACAAACAAAGAAACAAATGAAAATGATGATGAGCAAACAAATAACAATGAAGAGAAATTAGCGTCAGATGAGGAATCATCAAATGATGAGGGAACCAAGAAGAAGAAAACTCGCAAAGGAAAGAAGGTATCAAGTGTGAAAGATAAAGAAAAGGACAAGAAGTCAACAAAGCAAAAAGGCAAGATACCAATAATACAAGAGAGACAAGAGATACAGTAG

Coding sequence (CDS)

ATGAATAAAAAGGTAACTGAAGGAAGAACAAGAGTTAGTGAACGATTGAGAGCTGCTGGAATTAGTGGTGGAAAAAAACAAGCAAACAAAGACCCAATCGATATCACAAGTGAAGAAGAGGTTGCAAAAAGGACACCAGAAAAGAAGAAAAAGCAAATAAAGGATGTAGAGGAAGAAAATGATGAGGAAGACAAGCTAAAAGAGAGTAATGGAGGGGAAGAAGACAATACAAACAAAGAAACAAATGAAAATGATGATGAGCAAACAAATAACAATGAAGAGAAATTAGCGTCAGATGAGGAATCATCAAATGATGAGGGAACCAAGAAGAAGAAAACTCGCAAAGGAAAGAAGGTATCAAGTGTGAAAGATAAAGAAAAGGACAAGAAGTCAACAAAGCAAAAAGGCAAGATACCAATAATACAAGAGAGACAAGAGATACAGTAG

Protein sequence

MNKKVTEGRTRVSERLRAAGISGGKKQANKDPIDITSEEEVAKRTPEKKKKQIKDVEEENDEEDKLKESNGGEEDNTNKETNENDDEQTNNNEEKLASDEESSNDEGTKKKKTRKGKKVSSVKDKEKDKKSTKQKGKIPIIQERQEIQ

Homology

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BLAST of PI0001377 vs. NCBI nr
Match: XP_038876741.1 (cilia- and flagella-associated protein 251-like [Benincasa hispida])

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-05
Identity = 58/134 (43.28%), Postives = 85/134 (63.43%), Query Frame = 0


Query: 1   MNKKVTEGRTRVSERLRAAGISGGKKQANKDPIDITSEEEVAKRTPEKKKKQIKDVEEEN 60
           MNK+  EGR+R SERLRAAGI+GGKKQ +K+PI + +++E  KR  E KKK  K+V EE 
Sbjct: 1   MNKEKAEGRSRASERLRAAGITGGKKQTSKEPIVLNNDDEAVKRL-EPKKKWRKEVVEER 60

Query: 61  DEEDKL------KESNGGEE---------DNTNKETNENDDEQTNNNEEKLASDEESSND 120
           + +D+       ++SN  EE         +N + E+ +N++EQ+ +  E   S++ SS+ 
Sbjct: 61  EGQDEQHGGKDEQDSNEYEEEEEKLEGTCENVHDESKDNEEEQSQSRGETTQSEKRSSSG 120

The following BLAST results are available for this feature:

BLAST of PI0001377 vs.


Match Name	E-value	Identity	Description

BLAST of PI0001377 vs.


Match Name	E-value	Identity	Description

BLAST of PI0001377 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876741.1	1.9e-05	43.28	cilia- and flagella-associated protein 251-like [Benincasa hispida]	[more]

BLAST of PI0001377 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 49..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0001377.1	PI0001377.1	mRNA