PI0001352 (gene) Melon (PI 482460) v1

Overview


Name	PI0001352
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Zinc finger BED domain-containing protein RICESLEEPER 2-like
Location	chr02: 6865595 .. 6867051 (-)
RNA-Seq Expression	PI0001352
Synteny	PI0001352

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTACTGAGTATGTTACACCCCCTCCTAAACCACCTACTTTTTGCCCGAGAGACGGCATGAAGCCAACAGATACCGTTCTCCTCTCTACGTTACCTACTGACCACTTCTAAACTTAACTGAACTAGGGGTGTAAGAAGAACCTGACAACCCGAATAACCCGGACTACCCAACCCATATTATAAAAGTTGGGTTGGATTAGTTTAAAATGTGGGTTGGGTTGGGTTGGGTCTCGGGTTGGGGGTTGAAAAATTTGGTTCAACCTAACCCAACCTGAATTAATGATATATATATATATATATAATATATATTTATATTTTATATTTTATATTTTATATTATATTTAATATTTAATTATTAATTTAGTAAAAAGAAAAAGTTAGGGTTTCTCTTTCTTTAATTTAATTTCACGTCCGTGACCCATTAGGTTGCAATCTCAACTCTTTCCTCTTCTCAGTTTCTTCTCATTCGACACTCAACTTCTCTCACGTTCGGCTTCAGTTCATCTTCACGGCAAGCGATAGTGTCAACTTCTCACCATCACGCTGTCGCCGGCTTCACCTTCACCTTCACGCCGTCGCATCTCATCTCTCTCTCAAGTCTCATATCCGCTCGTCTAAGCTCTCTCTCACGTCTCATCGTCAGTCTCCCTCTTAGGTCTCATCGCTGCCACCGTCGGCTCGTTTCTCCATCTCAAGTCTCATTTGGGTTGACAAAGATTTGGGTAAGTTTAAGTATTTATTTCGATTTGAGCTTTTTTTTAGTAGATCTGCATTTATTAGTATTTTTGGTGTGTTTTGAGTTTGAAAATTTAGTAAATTTGATTCTGTAATTGTTGGAAGTTGGGTATAGTATAATTTTTTTTGGAGTGTAGGTAATATCAAATATGTATGCTAATTAAATAAGGGATTTAGATTGTCGGTGGTTGTTTTGATTCTACATTATTTTTTTTGATTGAATATGCTAATTAAATACTAAATAGGAGATTTAGATTTAGTGGATATGCTAGTTTTGATTCTATTTTGTTGATTGAATATGCACTGAATAATGTTTTTCATTATTGGTGGCTGTTTACATTCCTCTATGTCGTGTGGGTGATCTGACCCTAGCTTTTCTATTATTTTAGAATATGGAGAGCAGTAGTGGACAATATAGTGAAACTAGCCCTAGCCCTAGTCTTAGTCCTAGTCCTTCTCCTTCCACTAATAACGCAACGAAAATTGTGAGTTCGAGTAAACAACCACTACCCTATAAAAAGAGAACTAGAGCCACTAAGAAGACAACTTCCACTATATGGGATCACTTCACAAAGTTGGAAAAGAATAGTTCTAGGTGCACATGCAATTATTGTGATAAAGAGTATTGTTGTGATACTACCTCATGTGGAACTAGCACGTTATGGAAGCACTTAAAAAATCAGTGTAAGAAGTACCCATATAAGGAAGTAGAAACATGA

mRNA sequence

ATGGTTACTGAGTATGTTACACCCCCTCCTAAACCACCTACTTTTTGCCCGAGAGACGGCATGAAGCCAACAGATACCGTTGCAATCTCAACTCTTTCCTCTTCTCAGTTTCTTCTCATTCGACACTCAACTTCTCTCACGTTCGGCTTCAGTTCATCTTCACGGCAAGCGATAGTGTCAACTTCTCACCATCACGCTGTCGCCGGCTTCACCTTCACCTTCACGCCGTCGCATCTCATCTCTCTCTCAAGTCTCATATCCGCTCGTCTAAGCTCTCTCTCACGTCTCATCGTCAGTCTCCCTCTTAGGTCTCATCGCTGCCACCGTCGGCTCGTTTCTCCATCTCAAGTCTCATTTGGGTTGACAAAGATTTGGAATATGGAGAGCAGTAGTGGACAATATAGTGAAACTAGCCCTAGCCCTAGTCTTAGTCCTAGTCCTTCTCCTTCCACTAATAACGCAACGAAAATTGTGAGTTCGAGTAAACAACCACTACCCTATAAAAAGAGAACTAGAGCCACTAAGAAGACAACTTCCACTATATGGGATCACTTCACAAAGTTGGAAAAGAATAGTTCTAGGTGCACATGCAATTATTGTGATAAAGAGTATTGTTGTGATACTACCTCATGTGGAACTAGCACGTTATGGAAGCACTTAAAAAATCAGTGTAAGAAGTACCCATATAAGGAAGTAGAAACATGA

Coding sequence (CDS)

ATGGTTACTGAGTATGTTACACCCCCTCCTAAACCACCTACTTTTTGCCCGAGAGACGGCATGAAGCCAACAGATACCGTTGCAATCTCAACTCTTTCCTCTTCTCAGTTTCTTCTCATTCGACACTCAACTTCTCTCACGTTCGGCTTCAGTTCATCTTCACGGCAAGCGATAGTGTCAACTTCTCACCATCACGCTGTCGCCGGCTTCACCTTCACCTTCACGCCGTCGCATCTCATCTCTCTCTCAAGTCTCATATCCGCTCGTCTAAGCTCTCTCTCACGTCTCATCGTCAGTCTCCCTCTTAGGTCTCATCGCTGCCACCGTCGGCTCGTTTCTCCATCTCAAGTCTCATTTGGGTTGACAAAGATTTGGAATATGGAGAGCAGTAGTGGACAATATAGTGAAACTAGCCCTAGCCCTAGTCTTAGTCCTAGTCCTTCTCCTTCCACTAATAACGCAACGAAAATTGTGAGTTCGAGTAAACAACCACTACCCTATAAAAAGAGAACTAGAGCCACTAAGAAGACAACTTCCACTATATGGGATCACTTCACAAAGTTGGAAAAGAATAGTTCTAGGTGCACATGCAATTATTGTGATAAAGAGTATTGTTGTGATACTACCTCATGTGGAACTAGCACGTTATGGAAGCACTTAAAAAATCAGTGTAAGAAGTACCCATATAAGGAAGTAGAAACATGA

Protein sequence

MVTEYVTPPPKPPTFCPRDGMKPTDTVAISTLSSSQFLLIRHSTSLTFGFSSSSRQAIVSTSHHHAVAGFTFTFTPSHLISLSSLISARLSSLSRLIVSLPLRSHRCHRRLVSPSQVSFGLTKIWNMESSSGQYSETSPSPSLSPSPSPSTNNATKIVSSSKQPLPYKKRTRATKKTTSTIWDHFTKLEKNSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVET

Homology

[Close]

BLAST of PI0001352 vs. ExPASy TrEMBL
Match: A0A5D3C9B8 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001200 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 4.6e-44
Identity = 94/107 (87.85%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 127 MESSSGQYSETSPSPSLSPSPSPSTNNATKIVSSSKQPLPYKKRTRATKKTTSTIWDHFT 186
           ME+SSGQ+SET  SPSLSPSP+PSTNNAT  VSSSK PLP KK+ RATKKTTST+WDHFT
Sbjct: 1   METSSGQHSET--SPSLSPSPAPSTNNATGTVSSSKPPLPDKKKVRATKKTTSTVWDHFT 60

Query: 187 KLEKNSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE 234
           KLE+NSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE
Sbjct: 61  KLEENSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE 105

[Close]

BLAST of PI0001352 vs. ExPASy TrEMBL
Match: A0A5A7VIJ7 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold485G00070 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 4.6e-44
Identity = 94/107 (87.85%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 127 MESSSGQYSETSPSPSLSPSPSPSTNNATKIVSSSKQPLPYKKRTRATKKTTSTIWDHFT 186
           ME+SSGQ+SET  SPSLSPSP+PSTNNAT  VSSSK PLP KK+ RATKKTTST+WDHFT
Sbjct: 1   METSSGQHSET--SPSLSPSPAPSTNNATGTVSSSKPPLPDKKKVRATKKTTSTVWDHFT 60

Query: 187 KLEKNSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE 234
           KLE+NSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE
Sbjct: 61  KLEENSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE 105

[Close]

BLAST of PI0001352 vs. ExPASy TrEMBL
Match: A0A5D3CAM1 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold383G00090 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 4.6e-44
Identity = 94/107 (87.85%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 127 MESSSGQYSETSPSPSLSPSPSPSTNNATKIVSSSKQPLPYKKRTRATKKTTSTIWDHFT 186
           ME+SSGQ+SET  SPSLSPSP+PSTNNAT  VSSSK PLP KK+ RATKKTTST+WDHFT
Sbjct: 1   METSSGQHSET--SPSLSPSPAPSTNNATGTVSSSKPPLPDKKKVRATKKTTSTVWDHFT 60

Query: 187 KLEKNSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE 234
           KLE+NSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE
Sbjct: 61  KLEENSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE 105

[Close]

BLAST of PI0001352 vs. ExPASy TrEMBL
Match: A0A5D3D2K8 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00240 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.3e-43
Identity = 93/107 (86.92%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 127 MESSSGQYSETSPSPSLSPSPSPSTNNATKIVSSSKQPLPYKKRTRATKKTTSTIWDHFT 186
           ME+SSGQ+SET  SPSLSPSP+PSTNN T  VSSSK PLP KK+ RATKKTTST+WDHFT
Sbjct: 1   METSSGQHSET--SPSLSPSPAPSTNNTTGTVSSSKPPLPDKKKVRATKKTTSTVWDHFT 60

Query: 187 KLEKNSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE 234
           KLE+NSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE
Sbjct: 61  KLEENSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE 105

[Close]

BLAST of PI0001352 vs. ExPASy TrEMBL
Match: A0A5A7SRD2 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00270 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.3e-43
Identity = 93/107 (86.92%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 127 MESSSGQYSETSPSPSLSPSPSPSTNNATKIVSSSKQPLPYKKRTRATKKTTSTIWDHFT 186
           ME+SSGQ+SET  SPSLSPSP+PSTNN T  VSSSK PLP KK+ RATKKTTST+WDHFT
Sbjct: 1   METSSGQHSET--SPSLSPSPAPSTNNTTGTVSSSKPPLPDKKKVRATKKTTSTVWDHFT 60

Query: 187 KLEKNSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE 234
           KLE+NSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE
Sbjct: 61  KLEENSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE 105

[Close]

BLAST of PI0001352 vs. NCBI nr
Match: KAA0067548.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 188.0 bits (476), Expect = 9.5e-44
Identity = 94/107 (87.85%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 127 MESSSGQYSETSPSPSLSPSPSPSTNNATKIVSSSKQPLPYKKRTRATKKTTSTIWDHFT 186
           ME+SSGQ+SET  SPSLSPSP+PSTNNAT  VSSSK PLP KK+ RATKKTTST+WDHFT
Sbjct: 1   METSSGQHSET--SPSLSPSPAPSTNNATGTVSSSKPPLPDKKKVRATKKTTSTVWDHFT 60

Query: 187 KLEKNSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE 234
           KLE+NSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE
Sbjct: 61  KLEENSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE 105

[Close]

BLAST of PI0001352 vs. NCBI nr
Match: KAA0065439.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa] >TYK07824.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 188.0 bits (476), Expect = 9.5e-44
Identity = 94/107 (87.85%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 127 MESSSGQYSETSPSPSLSPSPSPSTNNATKIVSSSKQPLPYKKRTRATKKTTSTIWDHFT 186
           ME+SSGQ+SET  SPSLSPSP+PSTNNAT  VSSSK PLP KK+ RATKKTTST+WDHFT
Sbjct: 1   METSSGQHSET--SPSLSPSPAPSTNNATGTVSSSKPPLPDKKKVRATKKTTSTVWDHFT 60

Query: 187 KLEKNSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE 234
           KLE+NSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE
Sbjct: 61  KLEENSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE 105

[Close]

BLAST of PI0001352 vs. NCBI nr
Match: TYK08901.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 188.0 bits (476), Expect = 9.5e-44
Identity = 94/107 (87.85%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 127 MESSSGQYSETSPSPSLSPSPSPSTNNATKIVSSSKQPLPYKKRTRATKKTTSTIWDHFT 186
           ME+SSGQ+SET  SPSLSPSP+PSTNNAT  VSSSK PLP KK+ RATKKTTST+WDHFT
Sbjct: 1   METSSGQHSET--SPSLSPSPAPSTNNATGTVSSSKPPLPDKKKVRATKKTTSTVWDHFT 60

Query: 187 KLEKNSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE 234
           KLE+NSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE
Sbjct: 61  KLEENSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE 105

[Close]

BLAST of PI0001352 vs. NCBI nr
Match: TYK16769.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 186.4 bits (472), Expect = 2.8e-43
Identity = 93/107 (86.92%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 127 MESSSGQYSETSPSPSLSPSPSPSTNNATKIVSSSKQPLPYKKRTRATKKTTSTIWDHFT 186
           ME+SSGQ+SET  SPSLSPSP+PSTNN T  VSSSK PLP KK+ RATKKTTST+WDHFT
Sbjct: 1   METSSGQHSET--SPSLSPSPAPSTNNTTGTVSSSKPPLPDKKKVRATKKTTSTVWDHFT 60

Query: 187 KLEKNSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE 234
           KLE+NSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE
Sbjct: 61  KLEENSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE 105

[Close]

BLAST of PI0001352 vs. NCBI nr
Match: KAA0031947.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 186.4 bits (472), Expect = 2.8e-43
Identity = 93/107 (86.92%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 127 MESSSGQYSETSPSPSLSPSPSPSTNNATKIVSSSKQPLPYKKRTRATKKTTSTIWDHFT 186
           ME+SSGQ+SET  SPSLSPSP+PSTNN T  VSSSK PLP KK+ RATKKTTST+WDHFT
Sbjct: 1   METSSGQHSET--SPSLSPSPAPSTNNTTGTVSSSKPPLPDKKKVRATKKTTSTVWDHFT 60

Query: 187 KLEKNSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE 234
           KLE+NSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE
Sbjct: 61  KLEENSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPYKEVE 105

The following BLAST results are available for this feature:

BLAST of PI0001352 vs.


Match Name	E-value	Identity	Description

BLAST of PI0001352 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C9B8	4.6e-44	87.85	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5A7VIJ7	4.6e-44	87.85	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5D3CAM1	4.6e-44	87.85	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5D3D2K8	1.3e-43	86.92	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5A7SRD2	1.3e-43	86.92	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]

BLAST of PI0001352 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067548.1	9.5e-44	87.85	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
KAA0065439.1	9.5e-44	87.85	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
TYK08901.1	9.5e-44	87.85	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
TYK16769.1	2.8e-43	86.92	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
KAA0031947.1	2.8e-43	86.92	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]

BLAST of PI0001352 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00614	bed5	coord: 176..227 e-value: 5.1E-14 score: 62.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..167
None	No IPR available	PANTHER	PTHR34396	OS03G0264950 PROTEIN-RELATED	coord: 133..231
None	No IPR available	PANTHER	PTHR34396:SF1	OS03G0264950 PROTEIN	coord: 133..231
IPR003656	Zinc finger, BED-type	PFAM	PF02892	zf-BED	coord: 179..225 e-value: 3.5E-6 score: 26.9
IPR003656	Zinc finger, BED-type	PROSITE	PS50808	ZF_BED	coord: 176..231 score: 11.391456
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 179..229

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0001352.1	PI0001352.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009791	post-embryonic development
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0046983	protein dimerization activity