PI0001323 (gene) Melon (PI 482460) v1

Overview


Name	PI0001323
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	protein CURVATURE THYLAKOID 1B, chloroplastic
Location	chr11: 1913137 .. 1914998 (+)
RNA-Seq Expression	PI0001323
Synteny	PI0001323

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACATCTCCAAAAAGGGGAAAAAAAAAACACAAACACACAAACACCTGTCTACAAAACAAAAAAAACCAACAACAAAATCTTCACTTTCTTTCCTAAAGAAATTAGCTTTAGCTTCTTCTTGTGAACATTTTGAGTGAAGCAATCAATGGCTTCTTCTTCTTCCTCTACATTTGCTCTCTCTTCCTCCTCCACCCTCCTCGATTCTAAGGCTCCTCGACAATCCGCTTCGCCATCATCGACCGTGCCGCTCCCCACTCTCCCATCACCGCCTACTCAGTCCTCGCAGATCCGCCCTTGGAAGTCCACTGCCTATTGTGAGAATTATATTATATATATCTACACGTAATATATCATTTAAAATTAGCTCTTAAGTTAATATAGGTCATGATAAATTTAATCTTCGATGATTCTGTACGGATTTTTTAGGTCGGAAGATTGCTCGCAATGTGATGGCGATGGCGACCGGAGAAGTCCCAGCTGAAGTGGCGGCGACGGAGCTGGCGGAGATGCCTGAAATTATCAAAAAAGTTCAAGAAGCTGTATGCCAAAAATAAATCTTCTTTTTGAAAAACCAAAAAGAAAAAAAAAATTAATTTTGAATTTATCAAATTTATTTACATTATAATTGGGTTGGATTTTGTTTTGGTCAGTGGGATAAGGTTGAAGATAAGTATGCTGTAAGCTCACTTGCTGTCTCCGGTTTTGTCGCCCTTTGGGCCTCCGCTGGCGTTGTCTCCGTAAGTATTTTTCTTTTTAAATTTAAATTAATTATTGTAAATAACTTCTGAAAATATTTACACTAATAAAATTTAAAATTTTATTTTGTGAATTAGTAGTAAAGGTTTAATCCGAGAGTGTAAATGAGTATTGTTCAACGGATACAATATTTATATACGAAGATAAAATAAGGGTTTGATATTAAATTTTGCAAATTTTGTTGGATCTAAAATATGGACAAATTTTGTAGTTTAATTTATTTTTATTTTATGTTTTCAGGCAATTGATAGGCTTCCTCTAGTTCCTGGCCTGCTTGAGCTTGTGGGAATTGGCTACACTGGGGTAAGTCCATTTATAACATAATTTAGTCTATTTGATTCCAAATTTGTAATGATTTAATTTTATTGGCAAAAACTTTCATTAAAACTAAATGTTAATTTCTATTACTTATTTGTGTATACTTGTATGGCTTATAAAACATATGGGATCTCTAAATAGTTTAAAAAGTCATTAAAACTAATGCTTACTTTGAATCTAATTGTCATACTTGCATTTTTTATAATTATGTGCAGTGGTTTGCATACAAGAATCTGATTTTCAGACCAGACAGGTAATAAGTTCTAACACATTTTACATACCATGAAGATGTTTATTTATTTTTTTATTGTTTAATTTAATTTACATTTTGATAAATTGTTACAGGGAAGCATTATTGCAGAAACTAAAGGACACCTACAGTGAGATAATAGGGAGCAGCTAAAGAAGATTATTGATGTGTGTTCAAAGAGGGGATTTCAAATTATTCTCTATGGCTAATAATTAAGAGTTTAAATTCTGGTCTTCTTCTTCTTCTTCTTCTTTTTTATTTTTTATTTTTTTTTTATTTTAATTTCAAGCCAAAAAATAAAAAATAATAATCTTTATCATTAATTGCTGTTTTGCATTGCATTGCAAGTATATTTGCATGAAAAATTGTAACTTCTTTTTACCCACCTTTTTGTTCTCCTCATATTTCTTATGTAATTGCCCTAACTCAATCCCAATCTTTGTGTACTTTATGTGCTTTCATTTTACTACCTCTTAAATTTCTGTCCAATTATTGCAATTTTACAACACTTTTTGAAGCTAGCTATGGATTACAG

mRNA sequence

AAAACATCTCCAAAAAGGGGAAAAAAAAAACACAAACACACAAACACCTGTCTACAAAACAAAAAAAACCAACAACAAAATCTTCACTTTCTTTCCTAAAGAAATTAGCTTTAGCTTCTTCTTGTGAACATTTTGAGTGAAGCAATCAATGGCTTCTTCTTCTTCCTCTACATTTGCTCTCTCTTCCTCCTCCACCCTCCTCGATTCTAAGGCTCCTCGACAATCCGCTTCGCCATCATCGACCGTGCCGCTCCCCACTCTCCCATCACCGCCTACTCAGTCCTCGCAGATCCGCCCTTGGAAGTCCACTGCCTATTGTCGGAAGATTGCTCGCAATGTGATGGCGATGGCGACCGGAGAAGTCCCAGCTGAAGTGGCGGCGACGGAGCTGGCGGAGATGCCTGAAATTATCAAAAAAGTTCAAGAAGCTTGGGATAAGGTTGAAGATAAGTATGCTGTAAGCTCACTTGCTGTCTCCGGTTTTGTCGCCCTTTGGGCCTCCGCTGGCGTTGTCTCCGCAATTGATAGGCTTCCTCTAGTTCCTGGCCTGCTTGAGCTTGTGGGAATTGGCTACACTGGGTGGTTTGCATACAAGAATCTGATTTTCAGACCAGACAGGGAAGCATTATTGCAGAAACTAAAGGACACCTACAGTGAGATAATAGGGAGCAGCTAAAGAAGATTATTGATGTGTGTTCAAAGAGGGGATTTCAAATTATTCTCTATGGCTAATAATTAAGAGTTTAAATTCTGGTCTTCTTCTTCTTCTTCTTCTTTTTTATTTTTTATTTTTTTTTTATTTTAATTTCAAGCCAAAAAATAAAAAATAATAATCTTTATCATTAATTGCTGTTTTGCATTGCATTGCAAGTATATTTGCATGAAAAATTGTAACTTCTTTTTACCCACCTTTTTGTTCTCCTCATATTTCTTATGTAATTGCCCTAACTCAATCCCAATCTTTGTGTACTTTATGTGCTTTCATTTTACTACCTCTTAAATTTCTGTCCAATTATTGCAATTTTACAACACTTTTTGAAGCTAGCTATGGATTACAG

Coding sequence (CDS)

ATGGCTTCTTCTTCTTCCTCTACATTTGCTCTCTCTTCCTCCTCCACCCTCCTCGATTCTAAGGCTCCTCGACAATCCGCTTCGCCATCATCGACCGTGCCGCTCCCCACTCTCCCATCACCGCCTACTCAGTCCTCGCAGATCCGCCCTTGGAAGTCCACTGCCTATTGTCGGAAGATTGCTCGCAATGTGATGGCGATGGCGACCGGAGAAGTCCCAGCTGAAGTGGCGGCGACGGAGCTGGCGGAGATGCCTGAAATTATCAAAAAAGTTCAAGAAGCTTGGGATAAGGTTGAAGATAAGTATGCTGTAAGCTCACTTGCTGTCTCCGGTTTTGTCGCCCTTTGGGCCTCCGCTGGCGTTGTCTCCGCAATTGATAGGCTTCCTCTAGTTCCTGGCCTGCTTGAGCTTGTGGGAATTGGCTACACTGGGTGGTTTGCATACAAGAATCTGATTTTCAGACCAGACAGGGAAGCATTATTGCAGAAACTAAAGGACACCTACAGTGAGATAATAGGGAGCAGCTAA

Protein sequence

MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTQSSQIRPWKSTAYCRKIARNVMAMATGEVPAEVAATELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKDTYSEIIGSS

Homology

[Close]

BLAST of PI0001323 vs. ExPASy Swiss-Prot
Match: Q8LCA1 (Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1B PE=1 SV=2)

HSP 1 Score: 197.6 bits (501), Expect = 1.2e-49
Identity = 106/177 (59.89%), Postives = 131/177 (74.01%), Query Frame = 0


Query: 7   STFALSSSSTLLDSKAP-----RQSASPSSTVPLPTLPSPPTQSSQIRPWKSTAYCRKIA 66
           ++ ++SSSST++DS+AP       SAS  S + LPTLP      S  R  K+TAYCRKI 
Sbjct: 2   ASLSVSSSSTIIDSRAPPSRLASASASSPSCISLPTLPI----QSHTRAAKATAYCRKIV 61

Query: 67  RNVMAMAT---GEVPAEVAATELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWAS 126
           RNV+  AT   GE PA     E  E+PEI+K  QEAW+KV+DKYA+ SLA +G VALW S
Sbjct: 62  RNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGS 121

Query: 127 AGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKDTYSEIIGSS 176
           AG++SAIDRLPLVPG+LELVGIGYTGWF YKNL+F+PDREAL +K+K TY +I+GSS
Sbjct: 122 AGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGSS 174

[Close]

BLAST of PI0001323 vs. ExPASy Swiss-Prot
Match: Q9M812 (Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1C PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.9e-17
Identity = 42/111 (37.84%), Postives = 74/111 (66.67%), Query Frame = 0


Query: 63  NVMAMATGEVPAEVAATELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVV 122
           ++M  A+GE  +  ++T+L    +++  +Q  WDK ED+  +  L  +G VALWAS  ++
Sbjct: 51  SLMVKASGE--SSDSSTDL----DVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLI 110

Query: 123 SAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKDTYSEIIG 174
           +AID+LP++    ELVGI ++ WF Y+ L+F+PDR+ L + +K + ++I+G
Sbjct: 111 TAIDKLPVISSGFELVGILFSTWFTYRYLLFKPDRQELSKIVKKSVADILG 155

[Close]

BLAST of PI0001323 vs. ExPASy Swiss-Prot
Match: O04616 (Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1A PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.1e-14
Identity = 49/158 (31.01%), Postives = 83/158 (52.53%), Query Frame = 0


Query: 26  SASPSSTVPLPTLPSPPTQSSQIRPWKSTAYCRKIARNVMAMATG---------EVPAEV 85
           +AS S  V +P +P+  T+ S +      ++ R      + + +G         +  A  
Sbjct: 6   AASSSMAVMVPRVPAVSTRCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVELLKTRASS 65

Query: 86  AATELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLE 145
             T   +  E+I  ++E WD +E+K  V        VA+W S+ VV AI+ +PL+P ++E
Sbjct: 66  EETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVME 125

Query: 146 LVGIGYTGWFAYKNLIFRPDREALLQKLKDTYSEIIGS 175
           LVG+GYTGWF Y+ L+F+  R+ L + ++    +I GS
Sbjct: 126 LVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGS 163

[Close]

BLAST of PI0001323 vs. ExPASy Swiss-Prot
Match: Q8LDD3 (Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1D PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.7e-09
Identity = 32/101 (31.68%), Postives = 58/101 (57.43%), Query Frame = 0


Query: 74  AEVAATELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPG 133
           A  A  E  +  E +  ++   DK    Y++        VAL+ ++ +VS+++ +PL P 
Sbjct: 93  APQAEDEETQALEFLNDIKLDSDKT---YSILLYGSGAIVALYLTSAIVSSLEAIPLFPK 152

Query: 134 LLELVGIGYTGWFAYKNLIFRPDREALLQKLKDTYSEIIGS 175
           L+E+VG+GYT WF  + L+F+ +RE L  K+ +   +++GS
Sbjct: 153 LMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIKKQVLGS 190

[Close]

BLAST of PI0001323 vs. ExPASy Swiss-Prot
Match: Q8YX97 (Valine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=valS PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 8.8e-05
Identity = 20/57 (35.09%), Postives = 32/57 (56.14%), Query Frame = 0


Query: 107 LAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQK 164
           L ++G V L  +  V   +D +P +    E+VG+GY+ WF  +NL+  P R+  L K
Sbjct: 850 LVIAGLVFLRVALAVADTVDNVPFLGTFFEIVGLGYSAWFVTRNLLSTPARKRFLAK 906

[Close]

BLAST of PI0001323 vs. ExPASy TrEMBL
Match: A0A0A0KCB7 (CAAD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G095900 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.4e-82
Identity = 169/175 (96.57%), Postives = 171/175 (97.71%), Query Frame = 0


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTQSSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPT  SQIRPWKSTAYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI 60

Query: 61  ARNVMAMATGEVPAEVAATELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVM MATGEVPAEVAA ELAEMPEI+KKVQEAWDKVEDKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKDTYSEIIGSS 176
           VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLK+TYSEIIGSS
Sbjct: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 175

[Close]

BLAST of PI0001323 vs. ExPASy TrEMBL
Match: A0A5A7T8Q0 (Protein CURVATURE THYLAKOID 1B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002480 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.2e-81
Identity = 170/176 (96.59%), Postives = 172/176 (97.73%), Query Frame = 0


Query: 1   MASSSSSTFALSSS-STLLDSKAPRQSASPSSTVPLPTLPSPPTQSSQIRPWKSTAYCRK 60
           MASSSSSTFALSSS STLLDSKAPRQS SPSSTVPLPTLPSPPT S+QIRPWKSTAYCRK
Sbjct: 1   MASSSSSTFALSSSASTLLDSKAPRQSGSPSSTVPLPTLPSPPTPSAQIRPWKSTAYCRK 60

Query: 61  IARNVMAMATGEVPAEVAATELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120
           IARNVMAMATGEVPAEVAA ELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA
Sbjct: 61  IARNVMAMATGEVPAEVAAGELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120

Query: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKDTYSEIIGSS 176
           GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLK+TYSEIIGSS
Sbjct: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176

[Close]

BLAST of PI0001323 vs. ExPASy TrEMBL
Match: A0A1S3CCA4 (protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498834 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.2e-81
Identity = 170/176 (96.59%), Postives = 172/176 (97.73%), Query Frame = 0


Query: 1   MASSSSSTFALSSS-STLLDSKAPRQSASPSSTVPLPTLPSPPTQSSQIRPWKSTAYCRK 60
           MASSSSSTFALSSS STLLDSKAPRQS SPSSTVPLPTLPSPPT S+QIRPWKSTAYCRK
Sbjct: 1   MASSSSSTFALSSSASTLLDSKAPRQSGSPSSTVPLPTLPSPPTPSAQIRPWKSTAYCRK 60

Query: 61  IARNVMAMATGEVPAEVAATELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120
           IARNVMAMATGEVPAEVAA ELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA
Sbjct: 61  IARNVMAMATGEVPAEVAAGELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120

Query: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKDTYSEIIGSS 176
           GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLK+TYSEIIGSS
Sbjct: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176

[Close]

BLAST of PI0001323 vs. ExPASy TrEMBL
Match: A0A6J1JPR9 (protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488730 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.3e-80
Identity = 162/175 (92.57%), Postives = 171/175 (97.71%), Query Frame = 0


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTQSSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPP  S+QIRPWKSTAYCR+I
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPAPSTQIRPWKSTAYCRRI 60

Query: 61  ARNVMAMATGEVPAEVAATELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVMAMATGEVPAEVA  E+AE+PEIIKKVQEAWDKV+DKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMAMATGEVPAEVATVEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKDTYSEIIGSS 176
           VVSAIDRLPL+PGLLELVGIGYTGWFAYKNLIFRPDREALLQKL++TY+EIIGSS
Sbjct: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEIIGSS 175

[Close]

BLAST of PI0001323 vs. ExPASy TrEMBL
Match: A0A6J1ET79 (protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111436295 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 8.7e-80
Identity = 161/175 (92.00%), Postives = 170/175 (97.14%), Query Frame = 0


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTQSSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPP  S+QIR WKSTAYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPPPSTQIRSWKSTAYCRKI 60

Query: 61  ARNVMAMATGEVPAEVAATELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVMAMATGEVPAEVA  E+AE+PEIIKKVQEAWDKV+DKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMAMATGEVPAEVATAEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKDTYSEIIGSS 176
           VVSAIDRLPL+PGLLELVGIGYTGWFAYKNLIFRPDREALLQKL++TY+E+IGSS
Sbjct: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEVIGSS 175

[Close]

BLAST of PI0001323 vs. NCBI nr
Match: XP_038906765.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Benincasa hispida])

HSP 1 Score: 315.8 bits (808), Expect = 2.3e-82
Identity = 168/175 (96.00%), Postives = 172/175 (98.29%), Query Frame = 0


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTQSSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSASPS+ VPLPTLPSPPT SSQIRPWKSTAYCRK+
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSANVPLPTLPSPPTPSSQIRPWKSTAYCRKV 60

Query: 61  ARNVMAMATGEVPAEVAATELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVMAMATGEVPAEVAA ELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMAMATGEVPAEVAAGELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKDTYSEIIGSS 176
           VVSAIDRLPL+PGLLELVGIGYTGWFAYKNLIFRPDREALLQKLK+TYSEIIGSS
Sbjct: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 175

[Close]

BLAST of PI0001323 vs. NCBI nr
Match: XP_004140528.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis sativus] >KGN46474.1 hypothetical protein Csa_005298 [Cucumis sativus])

HSP 1 Score: 315.5 bits (807), Expect = 3.0e-82
Identity = 169/175 (96.57%), Postives = 171/175 (97.71%), Query Frame = 0


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTQSSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPT  SQIRPWKSTAYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI 60

Query: 61  ARNVMAMATGEVPAEVAATELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVM MATGEVPAEVAA ELAEMPEI+KKVQEAWDKVEDKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKDTYSEIIGSS 176
           VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLK+TYSEIIGSS
Sbjct: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 175

[Close]

BLAST of PI0001323 vs. NCBI nr
Match: XP_008459821.1 (PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis melo] >KAA0039802.1 protein CURVATURE THYLAKOID 1B [Cucumis melo var. makuwa] >TYK24695.1 protein CURVATURE THYLAKOID 1B [Cucumis melo var. makuwa])

HSP 1 Score: 312.4 bits (799), Expect = 2.5e-81
Identity = 170/176 (96.59%), Postives = 172/176 (97.73%), Query Frame = 0


Query: 1   MASSSSSTFALSSS-STLLDSKAPRQSASPSSTVPLPTLPSPPTQSSQIRPWKSTAYCRK 60
           MASSSSSTFALSSS STLLDSKAPRQS SPSSTVPLPTLPSPPT S+QIRPWKSTAYCRK
Sbjct: 1   MASSSSSTFALSSSASTLLDSKAPRQSGSPSSTVPLPTLPSPPTPSAQIRPWKSTAYCRK 60

Query: 61  IARNVMAMATGEVPAEVAATELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120
           IARNVMAMATGEVPAEVAA ELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA
Sbjct: 61  IARNVMAMATGEVPAEVAAGELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120

Query: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKDTYSEIIGSS 176
           GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLK+TYSEIIGSS
Sbjct: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176

[Close]

BLAST of PI0001323 vs. NCBI nr
Match: XP_022992417.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita maxima])

HSP 1 Score: 308.9 bits (790), Expect = 2.8e-80
Identity = 162/175 (92.57%), Postives = 171/175 (97.71%), Query Frame = 0


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTQSSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPP  S+QIRPWKSTAYCR+I
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPAPSTQIRPWKSTAYCRRI 60

Query: 61  ARNVMAMATGEVPAEVAATELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVMAMATGEVPAEVA  E+AE+PEIIKKVQEAWDKV+DKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMAMATGEVPAEVATVEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKDTYSEIIGSS 176
           VVSAIDRLPL+PGLLELVGIGYTGWFAYKNLIFRPDREALLQKL++TY+EIIGSS
Sbjct: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEIIGSS 175

[Close]

BLAST of PI0001323 vs. NCBI nr
Match: XP_022929793.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita moschata] >XP_023547749.1 protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita pepo subsp. pepo] >KAG7013838.1 Protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 306.2 bits (783), Expect = 1.8e-79
Identity = 161/175 (92.00%), Postives = 170/175 (97.14%), Query Frame = 0


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTQSSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPP  S+QIR WKSTAYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPPPSTQIRSWKSTAYCRKI 60

Query: 61  ARNVMAMATGEVPAEVAATELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVMAMATGEVPAEVA  E+AE+PEIIKKVQEAWDKV+DKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMAMATGEVPAEVATAEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKDTYSEIIGSS 176
           VVSAIDRLPL+PGLLELVGIGYTGWFAYKNLIFRPDREALLQKL++TY+E+IGSS
Sbjct: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEVIGSS 175

[Close]

BLAST of PI0001323 vs. TAIR 10
Match: AT2G46820.1 (photosystem I P subunit )

HSP 1 Score: 197.6 bits (501), Expect = 8.4e-51
Identity = 106/177 (59.89%), Postives = 131/177 (74.01%), Query Frame = 0


Query: 7   STFALSSSSTLLDSKAP-----RQSASPSSTVPLPTLPSPPTQSSQIRPWKSTAYCRKIA 66
           ++ ++SSSST++DS+AP       SAS  S + LPTLP      S  R  K+TAYCRKI 
Sbjct: 2   ASLSVSSSSTIIDSRAPPSRLASASASSPSCISLPTLPI----QSHTRAAKATAYCRKIV 61

Query: 67  RNVMAMAT---GEVPAEVAATELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWAS 126
           RNV+  AT   GE PA     E  E+PEI+K  QEAW+KV+DKYA+ SLA +G VALW S
Sbjct: 62  RNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGS 121

Query: 127 AGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKDTYSEIIGSS 176
           AG++SAIDRLPLVPG+LELVGIGYTGWF YKNL+F+PDREAL +K+K TY +I+GSS
Sbjct: 122 AGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGSS 174

[Close]

BLAST of PI0001323 vs. TAIR 10
Match: AT2G46820.2 (photosystem I P subunit )

HSP 1 Score: 197.6 bits (501), Expect = 8.4e-51
Identity = 106/177 (59.89%), Postives = 131/177 (74.01%), Query Frame = 0


Query: 7   STFALSSSSTLLDSKAP-----RQSASPSSTVPLPTLPSPPTQSSQIRPWKSTAYCRKIA 66
           ++ ++SSSST++DS+AP       SAS  S + LPTLP      S  R  K+TAYCRKI 
Sbjct: 2   ASLSVSSSSTIIDSRAPPSRLASASASSPSCISLPTLPI----QSHTRAAKATAYCRKIV 61

Query: 67  RNVMAMAT---GEVPAEVAATELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWAS 126
           RNV+  AT   GE PA     E  E+PEI+K  QEAW+KV+DKYA+ SLA +G VALW S
Sbjct: 62  RNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGS 121

Query: 127 AGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKDTYSEIIGSS 176
           AG++SAIDRLPLVPG+LELVGIGYTGWF YKNL+F+PDREAL +K+K TY +I+GSS
Sbjct: 122 AGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGSS 174

[Close]

BLAST of PI0001323 vs. TAIR 10
Match: AT1G52220.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 89.0 bits (219), Expect = 4.2e-18
Identity = 42/111 (37.84%), Postives = 74/111 (66.67%), Query Frame = 0


Query: 63  NVMAMATGEVPAEVAATELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVV 122
           ++M  A+GE  +  ++T+L    +++  +Q  WDK ED+  +  L  +G VALWAS  ++
Sbjct: 51  SLMVKASGE--SSDSSTDL----DVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLI 110

Query: 123 SAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKDTYSEIIG 174
           +AID+LP++    ELVGI ++ WF Y+ L+F+PDR+ L + +K + ++I+G
Sbjct: 111 TAIDKLPVISSGFELVGILFSTWFTYRYLLFKPDRQELSKIVKKSVADILG 155

[Close]

BLAST of PI0001323 vs. TAIR 10
Match: AT1G52220.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-16
Identity = 42/111 (37.84%), Postives = 74/111 (66.67%), Query Frame = 0


Query: 63  NVMAMATGEVPAEVAATELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVV 122
           ++M  A+GE  +  ++T+L    +++  +Q  WDK ED+  +  L  +G VALWAS  ++
Sbjct: 51  SLMVKASGE--SSDSSTDL----DVVSTIQN-WDKSEDRLGLIGLGFAGIVALWASLNLI 110

Query: 123 SAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKDTYSEIIG 174
           +AID+LP++    ELVGI ++ WF Y+ L+F+PDR+ L + +K + ++I+G
Sbjct: 111 TAIDKLPVISSGFELVGILFSTWFTYRYLLFKPDRQELSKIVKKSVADILG 154

[Close]

BLAST of PI0001323 vs. TAIR 10
Match: AT4G01150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 79.0 bits (193), Expect = 4.3e-15
Identity = 49/158 (31.01%), Postives = 83/158 (52.53%), Query Frame = 0


Query: 26  SASPSSTVPLPTLPSPPTQSSQIRPWKSTAYCRKIARNVMAMATG---------EVPAEV 85
           +AS S  V +P +P+  T+ S +      ++ R      + + +G         +  A  
Sbjct: 6   AASSSMAVMVPRVPAVSTRCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVELLKTRASS 65

Query: 86  AATELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLE 145
             T   +  E+I  ++E WD +E+K  V        VA+W S+ VV AI+ +PL+P ++E
Sbjct: 66  EETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVME 125

Query: 146 LVGIGYTGWFAYKNLIFRPDREALLQKLKDTYSEIIGS 175
           LVG+GYTGWF Y+ L+F+  R+ L + ++    +I GS
Sbjct: 126 LVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGS 163

The following BLAST results are available for this feature:

BLAST of PI0001323 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LCA1	1.2e-49	59.89	Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9M812	5.9e-17	37.84	Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
O04616	6.1e-14	31.01	Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q8LDD3	7.7e-09	31.68	Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q8YX97	8.8e-05	35.09	Valine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=1...	[more]

BLAST of PI0001323 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCB7	1.4e-82	96.57	CAAD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G095900 PE=4 S...	[more]
A0A5A7T8Q0	1.2e-81	96.59	Protein CURVATURE THYLAKOID 1B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3CCA4	1.2e-81	96.59	protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1JPR9	1.3e-80	92.57	protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1ET79	8.7e-80	92.00	protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of PI0001323 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906765.1	2.3e-82	96.00	protein CURVATURE THYLAKOID 1B, chloroplastic [Benincasa hispida]	[more]
XP_004140528.1	3.0e-82	96.57	protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis sativus] >KGN46474.1 hypo...	[more]
XP_008459821.1	2.5e-81	96.59	PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis melo] >KAA0039...	[more]
XP_022992417.1	2.8e-80	92.57	protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita maxima]	[more]
XP_022929793.1	1.8e-79	92.00	protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita moschata] >XP_023547749...	[more]

BLAST of PI0001323 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46820.1	8.4e-51	59.89	photosystem I P subunit	[more]
AT2G46820.2	8.4e-51	59.89	photosystem I P subunit	[more]
AT1G52220.1	4.2e-18	37.84	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G52220.2	1.0e-16	37.84	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT4G01150.1	4.3e-15	31.01	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025564	Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain	PFAM	PF14159	CAAD	coord: 89..173 e-value: 1.0E-29 score: 102.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	PANTHER	PTHR33222:SF9	PROTEIN CURVATURE THYLAKOID 1B, CHLOROPLASTIC	coord: 1..175
IPR033344	Protein CURVATURE THYLAKOID 1	PANTHER	PTHR33222	FAMILY NOT NAMED	coord: 1..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0001323.1	PI0001323.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity