PI0001312 (gene) Melon (PI 482460) v1

Overview
NamePI0001312
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Locationchr02: 19231081 .. 19234210 (-)
RNA-Seq ExpressionPI0001312
SyntenyPI0001312
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAGGATTTTGGCATTCGTTGCCAACTACCAGTTTCTTTGTTTGGTATCGGTAGAAAGACTTGTGTTCTGCGAGAAGATATTGTTGACTTCTGTAACATGCGAGAAGTTAAGACTTTGACATTGGTGGCATATATGGTGTAAGTACTCATCTTTCTACTCTAGTCTTTTTCTATAAAGTATTCGTTCATTGACTCTTTTTCATCTTTTGTAGGTATTTGCATTCACAAGATGTTTCAAATTACATATCGGCTGGACACGACACCCAGGAAGCTAGAGCTCACAACAAAACCAACTCGTTCTGGCTCTTTTTAATCCAGGGTAAGTAATATTATACTTATCAATTCAATAAATTGTAGAAGCTAAGGGTTTTGAATTTGGAGTATGTTTTTTTTTTTTTGGGGGGGGGGGGGTCAATCTACTTGTATTGCATTGACAGTGAAAACAATCTATTTGTATTCTTTTTATGTAGTGGTCATTGGGCACTTCTGGTTATTAACGCATATGATGAGACTGTCTATTATCTTGGTTCACTTCGAACAACATCTGGAGTAGATATTTGATATGTCACTGACACGTAAGTGAGCTTCTTTCCTATGATGTTTTCCGTCTTAAAGTTCACTTCATTATAATGTGTGTAGTTGTTTCTTGGCAATAAGGCTATTACTATCTTTCGATCTCAGAAAAATATTCAAACAGGTCGAAAACAACCAATGTGGAAAACAATGAAGGTAGGTGTAAACATATTTTTCGTTAACTAAAAGTATACGGTATATGGGCTATTTGCACCATTAAGTAGTTTGGTAATTTATATATTTACAGTGTCCTTTGCAAGTTGGAGTAGTTGAATGCGGGTACTATGTGATGAGATACATGAGAGATATAATCACCAATGGGAGCTTAGTACACAGATTCGGTATGTTGTGTTTAAATGATTGTTTAAATTATTTTATGCAATTCAAGTAATCAAAGTATTAATTTCAATATTTTGGGCTTCATATCAAATTGATAGAAGGAGCTCATATAGCCAATTGAAGTTGGATGAAGTGCGAATGGAGCTAGCTAATTTTATGGGTGGTCACATGTGATTATGGTGATTAGTTAAGTTTTTTTGGGTTAGGTAGACATGTATATTTTGTTAGATTAAATGATATTTTTTTAGTTTTTCTGGGTGAATCAATGATATTTTTTGAGTTAGATTAAACATGTATATTTTGTTGATATTGGATATAGGTGAATCTCAATATTGATATGGTATATTTTGGGTTACACATACATTTTGTTTATACTAGACAATAGATGGAAAGTTTGGGTAATTGTTAGAAGTTTGGGCTATTGTAATTAAGTATGTAATGACCAACTATTTGAATGGTTCATTTGATATATGCAATCTCTTAAGATATTAATTAGTTCTTTGTGTACTCTCTTTCTTTACTTATGTTCGTTATTGTCGTTGGACTTCAAACAGGTGCAGGAATAAATTATATGGATATTTTAAATTATATAATTTTTCATTTGAAAATTAAAAAAAAATCTTGACAAGCAAAACCTGTCAAGAATAAACAACTTCTTGATGCATTAAAAATGTCAACTAATCTCATATACTTGACGTTAAAAAATATACAAAAAAATCCCTCTTATACTTGACACTGGATTACTTGACACATAAAACATGTCAAGTACTATCATGTACTTGATGCTTGAAAACTGTCAAGTATAATTTACTTGACGCTTGAAAACTGTAGAAAAAACCCTCTTATTATTGACACTAGATTACTTGACGCGTAAAAAATGTCATATATATTGTTGCAAAATAAGCACAAATGAAAAATGTTAGCAACCACAAATGAGGAAAAATGTACAGTGAAAAAAGTAAGTTATAGAATTTAAAATTTGTTATTCATCGGTTTAGATAATTCACTATCAATTTTGATTTCAAAATATAGGATAGAGAGGGAGAGAACTATTATTTTCAAAGACATTGGAACTTTTTAACCATTTTTTCTTCGCAAAATTAATAAAATGTTTAAAAACAAATTAGTCATATTAGGTTATATATTTTTTTGTGACAAATTGCTACATGAAGAAATGAACAAATTCTTAGAACCACCATTTGTTAGGTTTATAACCAAGTTCCATAGTGATGGGTTTATTAAAAAACATCCCTTCAATACTTGTAAGAAGTGATTACAAAATTAGTAACATTTTTAAAACGTAGTTACAATTTTATAACCAAGTCTATACTTCTACACTTTTTAAAAAATGTAGTTACAATCTTATAACCAAATCTATATTTCTACACTTTTTAAAAACGTAGTTACAATTTTTATAACCAAGTCTATACTTCTACACTTCTTAAAAAATTTAGTTACAATTACATGACCAATTTTTTTGAAAAATGAATAAACTGCTTAGAACCAAATTAGTCATACAAGTGAATGTTTGTTTTTTTGTTTCAAATTGCTACAGGAAGAAATTAACAAAATCTGTAGAACCCAAAATTCCTTCCATACTTGCTACGAACGATTACAAAAACTTATTATAAAAATTCATAACTTATGAATAATGTATTTGAACGGGTTATTACTCTTGATCTTGCAATGGATCCACAAGAAATTGTTATACTCCTAACCGTGTTCACAACTTTTCAACGTTAGTTACTAATGACGTTGGAGTTATTAATGAATGACCACAGGAGGATACAACGTACAGCATACGATGCTAGGCATAGAATTAGGCAGCTGCGTACTTTCGTATGATCCATGAATCCGACCTAGTATGTCGTCAAAGTACTAGAATGGACAGAAGATGTTTTGTCATTCTATGCCACCTACTTAGGATGATTGTTGGATTAGCGTCGACAGAAGTCGTCGACGTTGAGGAGATGGTCGTCATGTTCCTCCACGTACTCGCGCACGACATGAAGAATCGAGTGATCCATAGGGAGTTCGTGCGGTCGGGTGAGACAATTTCGCGACATTTCAACATAGTCTTGTTGGCAGTGCTATGCCTGCATGACGAGTTGTTGAAGAAACCTCAACCAGTAACGAACGCGTGCACAGATCCCAGATGGAAGTGGTTTGAGGTACTTTATGAACGAAGAATAGTTGGACGCGTTTACCTTTAG

mRNA sequence

ATGGAAAAGGATTTTGGCATTCGTTGCCAACTACCAGTTTCTTTGTTTGGTATCGGTAGAAAGACTTGTGTTCTGCGAGAAGATATTGTTGACTTCTGTAACATGCGAGAAGTTAAGACTTTGACATTGGTGGCATATATGGTGTATTTGCATTCACAAGATGTTTCAAATTACATATCGGCTGGACACGACACCCAGGAAGCTAGAGCTCACAACAAAACCAACTCGTTCTGGCTCTTTTTAATCCAGGCGTCGACAGAAGTCGTCGACGTTGAGGAGATGGTCGTCATGTTCCTCCACGTACTCGCGCACGACATGAAGAATCGAGTGATCCATAGGGAGTTCGTGCGGTCGGGTGAGACAATTTCGCGACATTTCAACATAGTCTTGTTGGCAGTGCTATGCCTGCATGACGAGTTGTTGAAGAAACCTCAACCAGTAACGAACGCGTGCACAGATCCCAGATGGAAGTGGTTTGAGGTACTTTATGAACGAAGAATAGTTGGACGCGTTTACCTTTAG

Coding sequence (CDS)

ATGGAAAAGGATTTTGGCATTCGTTGCCAACTACCAGTTTCTTTGTTTGGTATCGGTAGAAAGACTTGTGTTCTGCGAGAAGATATTGTTGACTTCTGTAACATGCGAGAAGTTAAGACTTTGACATTGGTGGCATATATGGTGTATTTGCATTCACAAGATGTTTCAAATTACATATCGGCTGGACACGACACCCAGGAAGCTAGAGCTCACAACAAAACCAACTCGTTCTGGCTCTTTTTAATCCAGGCGTCGACAGAAGTCGTCGACGTTGAGGAGATGGTCGTCATGTTCCTCCACGTACTCGCGCACGACATGAAGAATCGAGTGATCCATAGGGAGTTCGTGCGGTCGGGTGAGACAATTTCGCGACATTTCAACATAGTCTTGTTGGCAGTGCTATGCCTGCATGACGAGTTGTTGAAGAAACCTCAACCAGTAACGAACGCGTGCACAGATCCCAGATGGAAGTGGTTTGAGGTACTTTATGAACGAAGAATAGTTGGACGCGTTTACCTTTAG

Protein sequence

MEKDFGIRCQLPVSLFGIGRKTCVLREDIVDFCNMREVKTLTLVAYMVYLHSQDVSNYISAGHDTQEARAHNKTNSFWLFLIQASTEVVDVEEMVVMFLHVLAHDMKNRVIHREFVRSGETISRHFNIVLLAVLCLHDELLKKPQPVTNACTDPRWKWFEVLYERRIVGRVYL
Homology
[Close]
BLAST of PI0001312 vs. ExPASy TrEMBL
Match: A0A5D3CDG6 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002070 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.8e-30
Identity = 63/75 (84.00%), Postives = 71/75 (94.67%), Query Frame = 0 

Query: 86  TEVVDVEEMVVMFLHVLAHDMKNRVIHREFVRSGETISRHFNIVLLAVLCLHDELLKKPQ 145
           TEV+DVEEMV MFLH+LAHD+KNR+I +EF RSGET+SRHFNIVLLA+L LHDELLKKPQ
Sbjct: 22  TEVIDVEEMVAMFLHILAHDVKNRMIQKEFARSGETVSRHFNIVLLAILRLHDELLKKPQ 81

Query: 146 PVTNACTDPRWKWFE 161
           PVTN+CTDPRWKWFE
Sbjct: 82  PVTNSCTDPRWKWFE 96

[Close]
BLAST of PI0001312 vs. ExPASy TrEMBL
Match: A0A5A7U0J9 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G002560 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.8e-30
Identity = 63/75 (84.00%), Postives = 71/75 (94.67%), Query Frame = 0 

Query: 86  TEVVDVEEMVVMFLHVLAHDMKNRVIHREFVRSGETISRHFNIVLLAVLCLHDELLKKPQ 145
           TEV+DVEEMV MFLH+LAHD+KNR+I +EF RSGET+SRHFNIVLLA+L LHDELLKKPQ
Sbjct: 22  TEVIDVEEMVAMFLHILAHDVKNRMIQKEFARSGETVSRHFNIVLLAILRLHDELLKKPQ 81

Query: 146 PVTNACTDPRWKWFE 161
           PVTN+CTDPRWKWFE
Sbjct: 82  PVTNSCTDPRWKWFE 96

[Close]
BLAST of PI0001312 vs. ExPASy TrEMBL
Match: A0A1S3B4J8 (uncharacterized protein LOC103485952 OS=Cucumis melo OX=3656 GN=LOC103485952 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.8e-30
Identity = 63/75 (84.00%), Postives = 71/75 (94.67%), Query Frame = 0 

Query: 86  TEVVDVEEMVVMFLHVLAHDMKNRVIHREFVRSGETISRHFNIVLLAVLCLHDELLKKPQ 145
           TEV+DVEEMV MFLH+LAHD+KNR+I +EF RSGET+SRHFNIVLLA+L LHDELLKKPQ
Sbjct: 22  TEVIDVEEMVAMFLHILAHDVKNRMIQKEFARSGETVSRHFNIVLLAILRLHDELLKKPQ 81

Query: 146 PVTNACTDPRWKWFE 161
           PVTN+CTDPRWKWFE
Sbjct: 82  PVTNSCTDPRWKWFE 96

[Close]
BLAST of PI0001312 vs. ExPASy TrEMBL
Match: A0A1S3C1U8 (putative nuclease HARBI1 OS=Cucumis melo OX=3656 GN=LOC103495887 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 6.2e-30
Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 0 

Query: 86  TEVVDVEEMVVMFLHVLAHDMKNRVIHREFVRSGETISRHFNIVLLAVLCLHDELLKKPQ 145
           TEV+DVEEMV MFLH+LAHD+KNR+I REFVRSGET+SRHFNIVLLA   LHDELLKKPQ
Sbjct: 22  TEVIDVEEMVAMFLHILAHDVKNRMIQREFVRSGETVSRHFNIVLLAGFRLHDELLKKPQ 81

Query: 146 PVTNACTDPRWKWFE 161
           PVTN+CTDPRWKWFE
Sbjct: 82  PVTNSCTDPRWKWFE 96

[Close]
BLAST of PI0001312 vs. ExPASy TrEMBL
Match: A0A5A7USI0 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3803G00010 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.8e-29
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 0 

Query: 85  STEVVDVEEMVVMFLHVLAHDMKNRVIHREFVRSGETISRHFNIVLLAVLCLHDELLKKP 144
           STEVVDVEEM+ MFLH+LAHD+KNRVI REF+RSGETISRHFN+VLLAV+ LHDELLKKP
Sbjct: 21  STEVVDVEEMIAMFLHILAHDVKNRVIQREFMRSGETISRHFNMVLLAVIRLHDELLKKP 80

Query: 145 QPVTNACTDPRWKWFEV 162
           QPV N CTD RW+WFEV
Sbjct: 81  QPVPNECTDQRWRWFEV 97

[Close]
BLAST of PI0001312 vs. NCBI nr
Match: XP_008441953.1 (PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 5.8e-30
Identity = 63/75 (84.00%), Postives = 71/75 (94.67%), Query Frame = 0 

Query: 86  TEVVDVEEMVVMFLHVLAHDMKNRVIHREFVRSGETISRHFNIVLLAVLCLHDELLKKPQ 145
           TEV+DVEEMV MFLH+LAHD+KNR+I +EF RSGET+SRHFNIVLLA+L LHDELLKKPQ
Sbjct: 22  TEVIDVEEMVAMFLHILAHDVKNRMIQKEFARSGETVSRHFNIVLLAILRLHDELLKKPQ 81

Query: 146 PVTNACTDPRWKWFE 161
           PVTN+CTDPRWKWFE
Sbjct: 82  PVTNSCTDPRWKWFE 96

[Close]
BLAST of PI0001312 vs. NCBI nr
Match: TYK08389.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 5.8e-30
Identity = 63/75 (84.00%), Postives = 71/75 (94.67%), Query Frame = 0 

Query: 86  TEVVDVEEMVVMFLHVLAHDMKNRVIHREFVRSGETISRHFNIVLLAVLCLHDELLKKPQ 145
           TEV+DVEEMV MFLH+LAHD+KNR+I +EF RSGET+SRHFNIVLLA+L LHDELLKKPQ
Sbjct: 22  TEVIDVEEMVAMFLHILAHDVKNRMIQKEFARSGETVSRHFNIVLLAILRLHDELLKKPQ 81

Query: 146 PVTNACTDPRWKWFE 161
           PVTN+CTDPRWKWFE
Sbjct: 82  PVTNSCTDPRWKWFE 96

[Close]
BLAST of PI0001312 vs. NCBI nr
Match: XP_008455792.1 (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 140.6 bits (353), Expect = 1.3e-29
Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 0 

Query: 86  TEVVDVEEMVVMFLHVLAHDMKNRVIHREFVRSGETISRHFNIVLLAVLCLHDELLKKPQ 145
           TEV+DVEEMV MFLH+LAHD+KNR+I REFVRSGET+SRHFNIVLLA   LHDELLKKPQ
Sbjct: 22  TEVIDVEEMVAMFLHILAHDVKNRMIQREFVRSGETVSRHFNIVLLAGFRLHDELLKKPQ 81

Query: 146 PVTNACTDPRWKWFE 161
           PVTN+CTDPRWKWFE
Sbjct: 82  PVTNSCTDPRWKWFE 96

[Close]
BLAST of PI0001312 vs. NCBI nr
Match: KAA0057637.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 139.0 bits (349), Expect = 3.7e-29
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 0 

Query: 85  STEVVDVEEMVVMFLHVLAHDMKNRVIHREFVRSGETISRHFNIVLLAVLCLHDELLKKP 144
           STEVVDVEEM+ MFLH+LAHD+KNRVI REF+RSGETISRHFN+VLLAV+ LHDELLKKP
Sbjct: 21  STEVVDVEEMIAMFLHILAHDVKNRVIQREFMRSGETISRHFNMVLLAVIRLHDELLKKP 80

Query: 145 QPVTNACTDPRWKWFEV 162
           QPV N CTD RW+WFEV
Sbjct: 81  QPVPNECTDQRWRWFEV 97

[Close]
BLAST of PI0001312 vs. NCBI nr
Match: KAA0062747.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 138.7 bits (348), Expect = 4.9e-29
Identity = 64/76 (84.21%), Postives = 70/76 (92.11%), Query Frame = 0 

Query: 86  TEVVDVEEMVVMFLHVLAHDMKNRVIHREFVRSGETISRHFNIVLLAVLCLHDELLKKPQ 145
           TEV+DVEEMV MFLH+LAH +KNR+I REFVRSGET+SRHFNIVLLA   LHDELLKKPQ
Sbjct: 22  TEVIDVEEMVAMFLHILAHVVKNRMIQREFVRSGETVSRHFNIVLLAGFRLHDELLKKPQ 81

Query: 146 PVTNACTDPRWKWFEV 162
           PVTN+CTDPRWKWFEV
Sbjct: 82  PVTNSCTDPRWKWFEV 97

[Close]
BLAST of PI0001312 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 9.6e-07
Identity = 28/76 (36.84%), Postives = 44/76 (57.89%), Query Frame = 0 

Query: 86  TEVVDVEEMVVMFLHVLAHDMKNRVIHREFVRSGETISRHFNIVLLAVLCLHDELLKKPQ 145
           T  + +E  + +FL ++ H+++ R +   F  SGETISRHFN VL AV+ +  +     Q
Sbjct: 69  TNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISRHFNNVLNAVIAISKDFF---Q 128

Query: 146 PVTNACT----DPRWK 158
           P +N+ T    DP +K
Sbjct: 129 PNSNSDTLENDDPYFK 141

The following BLAST results are available for this feature:
BLAST of PI0001312 vs.
Match NameE-valueIdentityDescription
BLAST of PI0001312 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CDG62.8e-3084.00Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7U0J92.8e-3084.00Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A1S3B4J82.8e-3084.00uncharacterized protein LOC103485952 OS=Cucumis melo OX=3656 GN=LOC103485952 PE=... [more]
A0A1S3C1U86.2e-3085.33putative nuclease HARBI1 OS=Cucumis melo OX=3656 GN=LOC103495887 PE=3 SV=1[more]
A0A5A7USI01.8e-2983.12Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
BLAST of PI0001312 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008441953.15.8e-3084.00PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 put... [more]
TYK08389.15.8e-3084.00putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
XP_008455792.11.3e-2985.33PREDICTED: putative nuclease HARBI1 [Cucumis melo][more]
KAA0057637.13.7e-2983.12putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
KAA0062747.14.9e-2984.21retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon p... [more]
BLAST of PI0001312 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G41980.19.6e-0736.84CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22930:SF216OS11G0577650 PROTEINcoord: 86..160
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 86..160

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0001312.1PI0001312.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding