PI0001259 (gene) Melon (PI 482460) v1

Overview
NamePI0001259
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionDNA-directed RNA polymerase subunit beta'
Locationtig00003740: 5465 .. 8288 (-)
RNA-Seq ExpressionPI0001259
SyntenyPI0001259
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGATCGGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTCCTCAACAAATAAGTGCTTGGGCCAATAAAACCCTACCTAATGGCGAGATAGTTGGAGAGGTAACAAAACCCTATACTTTTCATTACAAAACCAATAAACCTGAAAAAGATGGATTATTTTGTGAAAGAATTTTTGGGCCTATAAAAAGCGGGATTTGTGCTTGTGGAAATTATCGAGTCATCGGAGATAAAAAAGAAGATTCGAAATTTTGTGAACAATGCGGAGTCGAATTTGTTGATTCTCGGATACGAAGATATCAAATGGGCTATATTAAACTGGCATGCCCAGTAACCCATGTGTGGTATTTAAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAGAATTAGAAGGCTTAGTATATTGCGATGTGTGATTTGATCAAAATTTTGATTTTTAAGATTCAGAATGAGAAACTGTCATCCCATTCAATCGAATTGGGATGCCCCGGATCTGACATGTGGCTTGCTTGGTAGGAGTAACATGAAGCTCAGAATTTTGGGTGTAGTCAATACTCCCATCCCAAATAAAAGGGGAATTGGTCTATGGTCGATTCAGTAATAAATAGGAATTTTTAGTTCTACCTCGTGAAAAAAAAAAAAAAACTTATTTCTTTTGTGTAATTAATCATTCCTTTTTCTTTCAGAAAGAAATGAAATTATGTTCAAATAAGCAAATATGTCATGGTTAAAGGAGTCTATCCATCGCATATAGGCTTTAAGGACATCGTGGCATAACCGTCGAGGTAAAGTAGGGACCTAAAAGATCGAATGAAACGATACAAAGACAAACAAGTAAATCCCTTATGAATTCCAAGATACACTCCTTATTAATTTTCATTAAGGGGATTCGTCATTCCAAGGGAAATAGACTACTCAAAAATTTCACATTTCTTTTTTTTTTTTTATGTTGTAATTGATATATTGATATATTGAATAAAGAACTCAGAAAATTTAAATAAAAAAGCAAAAGAATCAATCAATGTAATGTTGTTTGGTCTTAATTGAGAACTTGAGTAAAGAGTAGTTGGGGGGTTTTATAGAATTTGAAAGCGGGAACCCCTTTATTTGATGTAACTACTTGAGCCGGATGAAAAGAAACTTTCACGTCCGATTTTGAAAGGGGGAGATCCTATAGTATCCTATCCAAATTTTTCTTTTGCTAGGCCCATAGCTAAAAAACCTACTTTCTTACGATTACGGGGTTCATTCGAATATGAAATCCAATCCTGGAAATACAGCATCCCACTTTTTTTTACTACCCAAGGCTTCGATACATTTCGAAATCGAGAAATTTCTACCGGAGCTGGTGCTATACGAGAACAATTAGCCGATCTGGATTTGCGACTTATTATAGATTATTCGTTGGTAGAATGGAAAGAATTAGGCGAAGAAGGACCCGCAGGTAATGAATGGGAAGATCGAAAAGTTGGAAGAAGAAAGGATTTTTTGGTTAGACGTATGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAACCCGAATGGATGGTTTTATGTCTATTACCAGTTCTTCCTCCCGAGCTGAGACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATATATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGGCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCCTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGACTCTATGTATTAACGAGCGGGAATCGCCGAGGTATTTGTGCAAATCGGTATAATCCATCTAATCGCAAAAATCATAAAAATGAAAAAATTGACAATAATAACTATAAATATACGAAAGAACCCTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGCCAGAAAAGGATCAATTTAGATAGTCCTTTGTGGCTCCGATGGCGACTAGATCAACGCGTTATTGCTTCAAGAGAAGCCCCTATCGAAGTTCACTATGAATCTTTGGGTACCCATCATGAGATTTATGGGTACTATCTAATAGTAAAAAGTATAAAAAAAGAAATTCTTTGTATATACATTCGAACCACTGTTGGTCATATTTCTCTTTATCGAGAAATCGAAGAGGCTATACAAGGATTTTGCCGGGCCTGCTCATATGGTACCTAA

mRNA sequence

ATGATCGATCGGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTCCTCAACAAATAAGTGCTTGGGCCAATAAAACCCTACCTAATGGCGAGATAGTTGGAGAGGTAACAAAACCCTATACTTTTCATTACAAAACCAATAAACCTGAAAAAGATGGATTATTTTGTGAAAGAATTTTTGGGCCTATAAAAAGCGGGATTTGTGCTTGTGGAAATTATCGAGTCATCGGAGATAAAAAAGAAGATTCGAAATTTTGTGAACAATGCGGAGTCGAATTTGTTGATTCTCGGATACGAAGATATCAAATGGGCTATATTAAACTGGCATGCCCAGTAACCCATGTGTGGTATTTAAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAGAATTAGAAGGCTTAGTATATTGCGATGTGCCCATAGCTAAAAAACCTACTTTCTTACGATTACGGGGTTCATTCGAATATGAAATCCAATCCTGGAAATACAGCATCCCACTTTTTTTTACTACCCAAGGCTTCGATACATTTCGAAATCGAGAAATTTCTACCGGAGCTGGTGCTATACGAGAACAATTAGCCGATCTGGATTTGCGACTTATTATAGATTATTCGTTGGTAGAATGGAAAGAATTAGGCGAAGAAGGACCCGCAGGTAATGAATGGGAAGATCGAAAAGTTGGAAGAAGAAAGGATTTTTTGGTTAGACGTATGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAACCCGAATGGATGGTTTTATGTCTATTACCAGTTCTTCCTCCCGAGCTGAGACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATATATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGGCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCCTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGACTCTATGTATTAACGAGCGGGAATCGCCGAGGTATTTGTGCAAATCGGTATAATCCATCTAATCGCAAAAATCATAAAAATGAAAAAATTGACAATAATAACTATAAATATACGAAAGAACCCTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGCCAGAAAAGGATCAATTTAGATAGTCCTTTGTGGCTCCGATGGCGACTAGATCAACGCGTTATTGCTTCAAGAGAAGCCCCTATCGAAGTTCACTATGAATCTTTGGGTACCCATCATGAGATTTATGGGTACTATCTAATAGTAAAAAGTATAAAAAAAGAAATTCTTTGTATATACATTCGAACCACTGTTGGTCATATTTCTCTTTATCGAGAAATCGAAGAGGCTATACAAGGATTTTGCCGGGCCTGCTCATATGGTACCTAA

Coding sequence (CDS)

ATGATCGATCGGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTCCTCAACAAATAAGTGCTTGGGCCAATAAAACCCTACCTAATGGCGAGATAGTTGGAGAGGTAACAAAACCCTATACTTTTCATTACAAAACCAATAAACCTGAAAAAGATGGATTATTTTGTGAAAGAATTTTTGGGCCTATAAAAAGCGGGATTTGTGCTTGTGGAAATTATCGAGTCATCGGAGATAAAAAAGAAGATTCGAAATTTTGTGAACAATGCGGAGTCGAATTTGTTGATTCTCGGATACGAAGATATCAAATGGGCTATATTAAACTGGCATGCCCAGTAACCCATGTGTGGTATTTAAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAGAATTAGAAGGCTTAGTATATTGCGATGTGCCCATAGCTAAAAAACCTACTTTCTTACGATTACGGGGTTCATTCGAATATGAAATCCAATCCTGGAAATACAGCATCCCACTTTTTTTTACTACCCAAGGCTTCGATACATTTCGAAATCGAGAAATTTCTACCGGAGCTGGTGCTATACGAGAACAATTAGCCGATCTGGATTTGCGACTTATTATAGATTATTCGTTGGTAGAATGGAAAGAATTAGGCGAAGAAGGACCCGCAGGTAATGAATGGGAAGATCGAAAAGTTGGAAGAAGAAAGGATTTTTTGGTTAGACGTATGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAACCCGAATGGATGGTTTTATGTCTATTACCAGTTCTTCCTCCCGAGCTGAGACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATATATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGGCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCCTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGACTCTATGTATTAACGAGCGGGAATCGCCGAGGTATTTGTGCAAATCGGTATAATCCATCTAATCGCAAAAATCATAAAAATGAAAAAATTGACAATAATAACTATAAATATACGAAAGAACCCTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGCCAGAAAAGGATCAATTTAGATAGTCCTTTGTGGCTCCGATGGCGACTAGATCAACGCGTTATTGCTTCAAGAGAAGCCCCTATCGAAGTTCACTATGAATCTTTGGGTACCCATCATGAGATTTATGGGTACTATCTAATAGTAAAAAGTATAAAAAAAGAAATTCTTTGTATATACATTCGAACCACTGTTGGTCATATTTCTCTTTATCGAGAAATCGAAGAGGCTATACAAGGATTTTGCCGGGCCTGCTCATATGGTACCTAA

Protein sequence

MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDVPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNHKNEKIDNNNYKYTKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT
Homology
[Close]
BLAST of PI0001259 vs. ExPASy Swiss-Prot
Match: Q4VZP2 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=3)

HSP 1 Score: 1380.5 bits (3572), Expect = 0.0e+00
Identity = 674/680 (99.12%), Postives = 674/680 (99.12%), Query Frame = 0 

Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDV----PIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT 180
           RLPSYIANLLDKPLKELEGLVYCD     PIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT 180

Query: 181 TQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRR 240
           TQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRR
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRR 240

Query: 241 KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 300
           KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI
Sbjct: 241 KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 300

Query: 301 YRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI 360
           YRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI
Sbjct: 301 YRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI 360

Query: 361 EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFA 420
           EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFA
Sbjct: 361 EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFA 420

Query: 421 SNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP 480
           SNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP
Sbjct: 421 SNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP 480

Query: 481 LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLY 540
           LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLY
Sbjct: 481 LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLY 540

Query: 541 VLTSGNRRGICANRYNPSNRKNHKNEKIDNNNYKYTKEPFFCNSYDAIGAYRQKRINLDS 600
           VLTSGNRRGICANRYNPSNRKNHKNEKI NNNYKYTKEPFFCNSYDAIGAYRQKRINLDS
Sbjct: 541 VLTSGNRRGICANRYNPSNRKNHKNEKIYNNNYKYTKEPFFCNSYDAIGAYRQKRINLDS 600

Query: 601 PLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHIS 660
           PLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHIS
Sbjct: 601 PLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHIS 660

Query: 661 LYREIEEAIQGFCRACSYGT 677
           LYREIEEAIQGFCRACSYGT
Sbjct: 661 LYREIEEAIQGFCRACSYGT 680

[Close]
BLAST of PI0001259 vs. ExPASy Swiss-Prot
Match: B1A926 (DNA-directed RNA polymerase subunit beta' OS=Carica papaya OX=3649 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1332.8 bits (3448), Expect = 0.0e+00
Identity = 644/680 (94.71%), Postives = 663/680 (97.50%), Query Frame = 0 

Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWAN+ LPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANRILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGD+KED KFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDV----PIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT 180
           RLPSYIANLLDKPLKELEGLVYCD     PI KKPTFLRLRGSFEYEIQSWKYSIPLFFT
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFT 180

Query: 181 TQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRR 240
           TQGFDTFRNREISTGAGAIREQLADLDL++IIDYS +EWKELGEEGP GNEWEDRK+GRR
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLQIIIDYSFLEWKELGEEGPTGNEWEDRKIGRR 240

Query: 241 KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 300
           KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI
Sbjct: 241 KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 300

Query: 301 YRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI 360
           YRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI
Sbjct: 301 YRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI 360

Query: 361 EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFA 420
           EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH A
Sbjct: 361 EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLA 420

Query: 421 SNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP 480
           SN+GVAKSKIREKEPI+WEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP
Sbjct: 421 SNMGVAKSKIREKEPIIWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP 480

Query: 481 LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLY 540
           LV KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDPISVPTQDML+GLY
Sbjct: 481 LVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLY 540

Query: 541 VLTSGNRRGICANRYNPSNRKNHKNEKIDNNNYKYTKEPFFCNSYDAIGAYRQKRINLDS 600
           VLTSG RRGICANRYNP NRKN++NE+ID+NNYKYTKEPFFCNSYDAIGAYRQKRINLDS
Sbjct: 541 VLTSGTRRGICANRYNPCNRKNYQNERIDDNNYKYTKEPFFCNSYDAIGAYRQKRINLDS 600

Query: 601 PLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHIS 660
           PLWLRW+LDQRVIASREAPIEVHYESLGT+HEIYG+YLIV+S+KKEILCIYIRTTVGHIS
Sbjct: 601 PLWLRWQLDQRVIASREAPIEVHYESLGTYHEIYGHYLIVRSVKKEILCIYIRTTVGHIS 660

Query: 661 LYREIEEAIQGFCRACSYGT 677
           LYREIEEAIQGFCRACSY T
Sbjct: 661 LYREIEEAIQGFCRACSYDT 680

[Close]
BLAST of PI0001259 vs. ExPASy Swiss-Prot
Match: Q0ZJ29 (DNA-directed RNA polymerase subunit beta' OS=Vitis vinifera OX=29760 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1313.9 bits (3399), Expect = 0.0e+00
Identity = 638/682 (93.55%), Postives = 660/682 (96.77%), Query Frame = 0 

Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIG VSPQQISAWANK LPNGEI+GEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGSVSPQQISAWANKILPNGEIIGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGD+K+D KFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDEKDDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDV----PIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT 180
           RLPSYIANLLDKPLKELEGLVYCD     PI KKPTFLRLRGSFEYEIQSWKYSIPLFFT
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDFSFARPIEKKPTFLRLRGSFEYEIQSWKYSIPLFFT 180

Query: 181 TQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRR 240
           TQGFDTFRNREISTGAGAIREQL DLDLR+IIDYSLVEWKELGEEGP GNEWEDRK+GRR
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLDDLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRR 240

Query: 241 KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 300
           KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI
Sbjct: 241 KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 300

Query: 301 YRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI 360
           YRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI
Sbjct: 301 YRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI 360

Query: 361 EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFA 420
           EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLH+CGLPREIAIELFQTFLIRGLIRQH A
Sbjct: 361 EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPREIAIELFQTFLIRGLIRQHLA 420

Query: 421 SNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP 480
           SNIGVAKS+IREKEPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP
Sbjct: 421 SNIGVAKSQIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP 480

Query: 481 LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLY 540
           LV KGFNADFDGDQMAVHVPLSLEAQ+EARLLMFSHMNLLS AIGDPISVPTQDMLIGLY
Sbjct: 481 LVRKGFNADFDGDQMAVHVPLSLEAQSEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLY 540

Query: 541 VLTSGNRRGICANRYNPSNRKNHKNEKIDNNNYKYT--KEPFFCNSYDAIGAYRQKRINL 600
           VLTSGNRRGICANRYNP NR+N++NE+ID+NNY+YT  KEPFFCNSYDAIGAYR KRINL
Sbjct: 541 VLTSGNRRGICANRYNPCNRRNYQNERIDDNNYRYTKEKEPFFCNSYDAIGAYRHKRINL 600

Query: 601 DSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGH 660
            SPLWLRW+LDQR+IAS+EAPIEVHYESLGT+HEIYG+YLIV+S+KKEI CIYIRTTVGH
Sbjct: 601 YSPLWLRWQLDQRLIASKEAPIEVHYESLGTYHEIYGHYLIVRSVKKEIPCIYIRTTVGH 660

Query: 661 ISLYREIEEAIQGFCRACSYGT 677
           ISLYREIEEAIQGFCRACSY T
Sbjct: 661 ISLYREIEEAIQGFCRACSYET 682

[Close]
BLAST of PI0001259 vs. ExPASy Swiss-Prot
Match: Q49L07 (DNA-directed RNA polymerase subunit beta' OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 1313.1 bits (3397), Expect = 0.0e+00
Identity = 637/682 (93.40%), Postives = 657/682 (96.33%), Query Frame = 0 

Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIG VSPQQISAWA K LPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGSVSPQQISAWAKKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGD+KED KFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDV----PIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT 180
           RLPSYIAN+LDKPLKELEGLVYCD     PIAKKPTFLRLRG FEYEIQSWKYSIPLFFT
Sbjct: 121 RLPSYIANILDKPLKELEGLVYCDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFT 180

Query: 181 TQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRR 240
           TQGFDTFRNREISTGAGAIREQLADLDLR+IIDYSLVEWKELGEE P GNEWEDRK+GRR
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEERPTGNEWEDRKIGRR 240

Query: 241 KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 300
           KDFLVRRMELAKHF+RTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI
Sbjct: 241 KDFLVRRMELAKHFLRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 300

Query: 301 YRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI 360
           YRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI
Sbjct: 301 YRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI 360

Query: 361 EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFA 420
           EGKEGRFRETLLGKRVDYSGRSVIVVGPSL LHRCGLPREIAIELFQTF+IRGLIRQH A
Sbjct: 361 EGKEGRFRETLLGKRVDYSGRSVIVVGPSLPLHRCGLPREIAIELFQTFVIRGLIRQHLA 420

Query: 421 SNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP 480
           SNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP
Sbjct: 421 SNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP 480

Query: 481 LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLY 540
           LV KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLY
Sbjct: 481 LVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLY 540

Query: 541 VLTSGNRRGICANRYNPSNRKNHKNEKIDNNNYKY--TKEPFFCNSYDAIGAYRQKRINL 600
           VLTSGNRRGIC NRYNP NR+N++NE+  +NNYKY   KEPFFCNSYDAIGAYRQKRINL
Sbjct: 541 VLTSGNRRGICTNRYNPWNRRNYQNERTYDNNYKYRKKKEPFFCNSYDAIGAYRQKRINL 600

Query: 601 DSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGH 660
           DSPLWLRWRLDQR+IASRE PIE+HYESLGT+HEIYG+YLIV+S+KKEI+CIYIRTTVGH
Sbjct: 601 DSPLWLRWRLDQRIIASREVPIEIHYESLGTYHEIYGHYLIVRSVKKEIICIYIRTTVGH 660

Query: 661 ISLYREIEEAIQGFCRACSYGT 677
           ISL+REIEEAIQGFCRACS+GT
Sbjct: 661 ISLFREIEEAIQGFCRACSFGT 682

[Close]
BLAST of PI0001259 vs. ExPASy Swiss-Prot
Match: Q68S15 (DNA-directed RNA polymerase subunit beta' OS=Panax ginseng OX=4054 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 1312.0 bits (3394), Expect = 0.0e+00
Identity = 640/681 (93.98%), Postives = 659/681 (96.77%), Query Frame = 0 

Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIG VSPQQIS WANK LPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGSVSPQQISTWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIG++KED KFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGNEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDV----PIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT 180
           RLPSYIANLLDKPLKELEGLVYCD     PIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT 180

Query: 181 TQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRR 240
           TQGFDTFRNREISTGAGAIREQLADLDLR+IID SLVEWKELGE+GP GNEWEDRKVGRR
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRIIIDSSLVEWKELGEDGPTGNEWEDRKVGRR 240

Query: 241 KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 300
           KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI
Sbjct: 241 KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 300

Query: 301 YRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI 360
           YRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI
Sbjct: 301 YRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI 360

Query: 361 EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFA 420
           EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH A
Sbjct: 361 EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLA 420

Query: 421 SNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP 480
           SNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHP
Sbjct: 421 SNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHP 480

Query: 481 LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLY 540
           LV KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLY
Sbjct: 481 LVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLY 540

Query: 541 VLTSGNRRGICANRYNPSNRKNHKNEKIDNNNYKYT--KEPFFCNSYDAIGAYRQKRINL 600
           VLTSGNRRGIC NRYNP NR+N++NE+I +NNYKYT  KEPFFCNSYDAIGAYRQKRINL
Sbjct: 541 VLTSGNRRGICVNRYNPCNRRNYQNERIYDNNYKYTKKKEPFFCNSYDAIGAYRQKRINL 600

Query: 601 DSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGH 660
           DSPLWLRWRLDQRVI+++EAP+EVHYESLGT++EIYG YLIV+SIKKEIL IYIRTTVGH
Sbjct: 601 DSPLWLRWRLDQRVISAKEAPLEVHYESLGTYYEIYGQYLIVRSIKKEILYIYIRTTVGH 660

Query: 661 ISLYREIEEAIQGFCRACSYG 676
           ISLYREIEEAIQGFC+ACSYG
Sbjct: 661 ISLYREIEEAIQGFCQACSYG 681

[Close]
BLAST of PI0001259 vs. ExPASy TrEMBL
Match: A0A286SB83 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1382.1 bits (3576), Expect = 0.0e+00
Identity = 675/681 (99.12%), Postives = 675/681 (99.12%), Query Frame = 0 

Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDV-----PIAKKPTFLRLRGSFEYEIQSWKYSIPLFF 180
           RLPSYIANLLDKPLKELEGLVYCDV     PIAKKPTFLRLRGSFEYEIQSWKYSIPLFF
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDVFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFF 180

Query: 181 TTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGR 240
           TTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGR
Sbjct: 181 TTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGR 240

Query: 241 RKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRV 300
           RKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRV
Sbjct: 241 RKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRV 300

Query: 301 IYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDV 360
           IYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDV
Sbjct: 301 IYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDV 360

Query: 361 IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHF 420
           IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHF
Sbjct: 361 IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHF 420

Query: 421 ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH 480
           ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Sbjct: 421 ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH 480

Query: 481 PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGL 540
           PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGL
Sbjct: 481 PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGL 540

Query: 541 YVLTSGNRRGICANRYNPSNRKNHKNEKIDNNNYKYTKEPFFCNSYDAIGAYRQKRINLD 600
           YVLTSGNRRGICANRYNPSNRKNHKNEKI NNNYKYTKEPFFCNSYDAIGAYRQKRINLD
Sbjct: 541 YVLTSGNRRGICANRYNPSNRKNHKNEKIYNNNYKYTKEPFFCNSYDAIGAYRQKRINLD 600

Query: 601 SPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHI 660
           SPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHI
Sbjct: 601 SPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHI 660

Query: 661 SLYREIEEAIQGFCRACSYGT 677
           SLYREIEEAIQGFCRACSYGT
Sbjct: 661 SLYREIEEAIQGFCRACSYGT 681

[Close]
BLAST of PI0001259 vs. ExPASy TrEMBL
Match: A0A249RXI6 (DNA-directed RNA polymerase subunit beta' OS=Cucumis melo subsp. agrestis OX=217619 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1382.1 bits (3576), Expect = 0.0e+00
Identity = 675/681 (99.12%), Postives = 675/681 (99.12%), Query Frame = 0 

Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDV-----PIAKKPTFLRLRGSFEYEIQSWKYSIPLFF 180
           RLPSYIANLLDKPLKELEGLVYCDV     PIAKKPTFLRLRGSFEYEIQSWKYSIPLFF
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDVFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFF 180

Query: 181 TTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGR 240
           TTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGR
Sbjct: 181 TTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGR 240

Query: 241 RKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRV 300
           RKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRV
Sbjct: 241 RKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRV 300

Query: 301 IYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDV 360
           IYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDV
Sbjct: 301 IYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDV 360

Query: 361 IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHF 420
           IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHF
Sbjct: 361 IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHF 420

Query: 421 ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH 480
           ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Sbjct: 421 ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH 480

Query: 481 PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGL 540
           PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGL
Sbjct: 481 PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGL 540

Query: 541 YVLTSGNRRGICANRYNPSNRKNHKNEKIDNNNYKYTKEPFFCNSYDAIGAYRQKRINLD 600
           YVLTSGNRRGICANRYNPSNRKNHKNEKI NNNYKYTKEPFFCNSYDAIGAYRQKRINLD
Sbjct: 541 YVLTSGNRRGICANRYNPSNRKNHKNEKIYNNNYKYTKEPFFCNSYDAIGAYRQKRINLD 600

Query: 601 SPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHI 660
           SPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHI
Sbjct: 601 SPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHI 660

Query: 661 SLYREIEEAIQGFCRACSYGT 677
           SLYREIEEAIQGFCRACSYGT
Sbjct: 661 SLYREIEEAIQGFCRACSYGT 681

[Close]
BLAST of PI0001259 vs. ExPASy TrEMBL
Match: W8E6U8 (DNA-directed RNA polymerase subunit gamma OS=Cucumis hystrix OX=396994 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1382.1 bits (3576), Expect = 0.0e+00
Identity = 675/681 (99.12%), Postives = 675/681 (99.12%), Query Frame = 0 

Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDV-----PIAKKPTFLRLRGSFEYEIQSWKYSIPLFF 180
           RLPSYIANLLDKPLKELEGLVYCDV     PIAKKPTFLRLRGSFEYEIQSWKYSIPLFF
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDVFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFF 180

Query: 181 TTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGR 240
           TTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGR
Sbjct: 181 TTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGR 240

Query: 241 RKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRV 300
           RKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRV
Sbjct: 241 RKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRV 300

Query: 301 IYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDV 360
           IYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDV
Sbjct: 301 IYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDV 360

Query: 361 IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHF 420
           IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHF
Sbjct: 361 IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHF 420

Query: 421 ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH 480
           ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Sbjct: 421 ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH 480

Query: 481 PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGL 540
           PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGL
Sbjct: 481 PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGL 540

Query: 541 YVLTSGNRRGICANRYNPSNRKNHKNEKIDNNNYKYTKEPFFCNSYDAIGAYRQKRINLD 600
           YVLTSGNRRGICANRYNPSNRKNHKNEKI NNNYKYTKEPFFCNSYDAIGAYRQKRINLD
Sbjct: 541 YVLTSGNRRGICANRYNPSNRKNHKNEKIYNNNYKYTKEPFFCNSYDAIGAYRQKRINLD 600

Query: 601 SPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHI 660
           SPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHI
Sbjct: 601 SPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHI 660

Query: 661 SLYREIEEAIQGFCRACSYGT 677
           SLYREIEEAIQGFCRACSYGT
Sbjct: 661 SLYREIEEAIQGFCRACSYGT 681

[Close]
BLAST of PI0001259 vs. ExPASy TrEMBL
Match: A0A343UM23 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus var. sativus OX=869827 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1382.1 bits (3576), Expect = 0.0e+00
Identity = 675/681 (99.12%), Postives = 675/681 (99.12%), Query Frame = 0 

Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDV-----PIAKKPTFLRLRGSFEYEIQSWKYSIPLFF 180
           RLPSYIANLLDKPLKELEGLVYCDV     PIAKKPTFLRLRGSFEYEIQSWKYSIPLFF
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDVFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFF 180

Query: 181 TTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGR 240
           TTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGR
Sbjct: 181 TTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGR 240

Query: 241 RKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRV 300
           RKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRV
Sbjct: 241 RKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRV 300

Query: 301 IYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDV 360
           IYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDV
Sbjct: 301 IYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDV 360

Query: 361 IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHF 420
           IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHF
Sbjct: 361 IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHF 420

Query: 421 ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH 480
           ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Sbjct: 421 ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH 480

Query: 481 PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGL 540
           PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGL
Sbjct: 481 PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGL 540

Query: 541 YVLTSGNRRGICANRYNPSNRKNHKNEKIDNNNYKYTKEPFFCNSYDAIGAYRQKRINLD 600
           YVLTSGNRRGICANRYNPSNRKNHKNEKI NNNYKYTKEPFFCNSYDAIGAYRQKRINLD
Sbjct: 541 YVLTSGNRRGICANRYNPSNRKNHKNEKIYNNNYKYTKEPFFCNSYDAIGAYRQKRINLD 600

Query: 601 SPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHI 660
           SPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHI
Sbjct: 601 SPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHI 660

Query: 661 SLYREIEEAIQGFCRACSYGT 677
           SLYREIEEAIQGFCRACSYGT
Sbjct: 661 SLYREIEEAIQGFCRACSYGT 681

[Close]
BLAST of PI0001259 vs. ExPASy TrEMBL
Match: A0A6H0ES08 (DNA-directed RNA polymerase subunit beta' OS=Ampelosycios humblotii OX=386639 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1382.1 bits (3576), Expect = 0.0e+00
Identity = 674/680 (99.12%), Postives = 674/680 (99.12%), Query Frame = 0 

Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDV----PIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT 180
           RLPSYIANLLDKPLKELEGLVYCD     PIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT 180

Query: 181 TQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRR 240
           TQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRR
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRR 240

Query: 241 KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 300
           KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI
Sbjct: 241 KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 300

Query: 301 YRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI 360
           YRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI
Sbjct: 301 YRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI 360

Query: 361 EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFA 420
           EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFA
Sbjct: 361 EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFA 420

Query: 421 SNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP 480
           SNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP
Sbjct: 421 SNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP 480

Query: 481 LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLY 540
           LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLY
Sbjct: 481 LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLY 540

Query: 541 VLTSGNRRGICANRYNPSNRKNHKNEKIDNNNYKYTKEPFFCNSYDAIGAYRQKRINLDS 600
           VLTSGNRRGICANRYNP NRKNHKNEKIDNNNYKYTKEPFFCNSYDAIGAYRQKRINLDS
Sbjct: 541 VLTSGNRRGICANRYNPCNRKNHKNEKIDNNNYKYTKEPFFCNSYDAIGAYRQKRINLDS 600

Query: 601 PLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHIS 660
           PLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHIS
Sbjct: 601 PLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHIS 660

Query: 661 LYREIEEAIQGFCRACSYGT 677
           LYREIEEAIQGFCRACSYGT
Sbjct: 661 LYREIEEAIQGFCRACSYGT 680

[Close]
BLAST of PI0001259 vs. NCBI nr
Match: YP_009752657.1 (RNA polymerase beta' subunit [Ampelosycios humblotii] >QIT05138.1 RNA polymerase beta' subunit [Ampelosycios humblotii])

HSP 1 Score: 1382.1 bits (3576), Expect = 0.0e+00
Identity = 674/680 (99.12%), Postives = 674/680 (99.12%), Query Frame = 0 

Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDV----PIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT 180
           RLPSYIANLLDKPLKELEGLVYCD     PIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT 180

Query: 181 TQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRR 240
           TQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRR
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRR 240

Query: 241 KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 300
           KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI
Sbjct: 241 KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 300

Query: 301 YRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI 360
           YRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI
Sbjct: 301 YRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI 360

Query: 361 EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFA 420
           EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFA
Sbjct: 361 EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFA 420

Query: 421 SNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP 480
           SNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP
Sbjct: 421 SNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP 480

Query: 481 LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLY 540
           LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLY
Sbjct: 481 LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLY 540

Query: 541 VLTSGNRRGICANRYNPSNRKNHKNEKIDNNNYKYTKEPFFCNSYDAIGAYRQKRINLDS 600
           VLTSGNRRGICANRYNP NRKNHKNEKIDNNNYKYTKEPFFCNSYDAIGAYRQKRINLDS
Sbjct: 541 VLTSGNRRGICANRYNPCNRKNHKNEKIDNNNYKYTKEPFFCNSYDAIGAYRQKRINLDS 600

Query: 601 PLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHIS 660
           PLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHIS
Sbjct: 601 PLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHIS 660

Query: 661 LYREIEEAIQGFCRACSYGT 677
           LYREIEEAIQGFCRACSYGT
Sbjct: 661 LYREIEEAIQGFCRACSYGT 680

[Close]
BLAST of PI0001259 vs. NCBI nr
Match: YP_009004035.1 (RNA polymerase beta [Cucumis hystrix] >AHJ61377.1 RNA polymerase beta [Cucumis hystrix] >ASY96357.1 RNA polymerase beta' subunit [Cucumis melo subsp. agrestis] >ASY97489.1 RNA polymerase beta' subunit [Cucumis sativus var. hardwickii] >AVE15322.1 RpoC1 [Cucumis sativus var. sativus])

HSP 1 Score: 1382.1 bits (3576), Expect = 0.0e+00
Identity = 675/681 (99.12%), Postives = 675/681 (99.12%), Query Frame = 0 

Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDV-----PIAKKPTFLRLRGSFEYEIQSWKYSIPLFF 180
           RLPSYIANLLDKPLKELEGLVYCDV     PIAKKPTFLRLRGSFEYEIQSWKYSIPLFF
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDVFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFF 180

Query: 181 TTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGR 240
           TTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGR
Sbjct: 181 TTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGR 240

Query: 241 RKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRV 300
           RKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRV
Sbjct: 241 RKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRV 300

Query: 301 IYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDV 360
           IYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDV
Sbjct: 301 IYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDV 360

Query: 361 IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHF 420
           IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHF
Sbjct: 361 IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHF 420

Query: 421 ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH 480
           ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Sbjct: 421 ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH 480

Query: 481 PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGL 540
           PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGL
Sbjct: 481 PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGL 540

Query: 541 YVLTSGNRRGICANRYNPSNRKNHKNEKIDNNNYKYTKEPFFCNSYDAIGAYRQKRINLD 600
           YVLTSGNRRGICANRYNPSNRKNHKNEKI NNNYKYTKEPFFCNSYDAIGAYRQKRINLD
Sbjct: 541 YVLTSGNRRGICANRYNPSNRKNHKNEKIYNNNYKYTKEPFFCNSYDAIGAYRQKRINLD 600

Query: 601 SPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHI 660
           SPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHI
Sbjct: 601 SPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHI 660

Query: 661 SLYREIEEAIQGFCRACSYGT 677
           SLYREIEEAIQGFCRACSYGT
Sbjct: 661 SLYREIEEAIQGFCRACSYGT 681

[Close]
BLAST of PI0001259 vs. NCBI nr
Match: AAZ94642.1 (RNA polymerase beta I subunit [Cucumis sativus])

HSP 1 Score: 1380.5 bits (3572), Expect = 0.0e+00
Identity = 674/680 (99.12%), Postives = 674/680 (99.12%), Query Frame = 0 

Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 8   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 67

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 68  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 127

Query: 121 RLPSYIANLLDKPLKELEGLVYCDV----PIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT 180
           RLPSYIANLLDKPLKELEGLVYCD     PIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT
Sbjct: 128 RLPSYIANLLDKPLKELEGLVYCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT 187

Query: 181 TQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRR 240
           TQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRR
Sbjct: 188 TQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRR 247

Query: 241 KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 300
           KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI
Sbjct: 248 KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 307

Query: 301 YRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI 360
           YRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI
Sbjct: 308 YRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI 367

Query: 361 EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFA 420
           EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFA
Sbjct: 368 EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFA 427

Query: 421 SNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP 480
           SNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP
Sbjct: 428 SNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP 487

Query: 481 LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLY 540
           LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLY
Sbjct: 488 LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLY 547

Query: 541 VLTSGNRRGICANRYNPSNRKNHKNEKIDNNNYKYTKEPFFCNSYDAIGAYRQKRINLDS 600
           VLTSGNRRGICANRYNPSNRKNHKNEKI NNNYKYTKEPFFCNSYDAIGAYRQKRINLDS
Sbjct: 548 VLTSGNRRGICANRYNPSNRKNHKNEKIYNNNYKYTKEPFFCNSYDAIGAYRQKRINLDS 607

Query: 601 PLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHIS 660
           PLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHIS
Sbjct: 608 PLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHIS 667

Query: 661 LYREIEEAIQGFCRACSYGT 677
           LYREIEEAIQGFCRACSYGT
Sbjct: 668 LYREIEEAIQGFCRACSYGT 687

[Close]
BLAST of PI0001259 vs. NCBI nr
Match: Q4VZP2.3 (RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta'; Short=RNA polymerase subunit beta' [Cucumis sativus] >ALF03292.1 RNA polymerase beta' subunit [Cucumis sativus var. hardwickii] >QCY72833.1 RpoC1 [Cucumis hystrix] >ABI97408.1 RNA polymerase beta' subunit [Cucumis sativus] >ABI98736.1 RNA polymerase beta [Cucumis sativus] >ANF28368.1 RNA polymerase beta' subunit [Cucumis sativus var. hardwickii])

HSP 1 Score: 1380.5 bits (3572), Expect = 0.0e+00
Identity = 674/680 (99.12%), Postives = 674/680 (99.12%), Query Frame = 0 

Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDV----PIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT 180
           RLPSYIANLLDKPLKELEGLVYCD     PIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT 180

Query: 181 TQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRR 240
           TQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRR
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRR 240

Query: 241 KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 300
           KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI
Sbjct: 241 KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 300

Query: 301 YRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI 360
           YRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI
Sbjct: 301 YRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI 360

Query: 361 EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFA 420
           EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFA
Sbjct: 361 EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFA 420

Query: 421 SNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP 480
           SNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP
Sbjct: 421 SNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP 480

Query: 481 LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLY 540
           LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLY
Sbjct: 481 LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLY 540

Query: 541 VLTSGNRRGICANRYNPSNRKNHKNEKIDNNNYKYTKEPFFCNSYDAIGAYRQKRINLDS 600
           VLTSGNRRGICANRYNPSNRKNHKNEKI NNNYKYTKEPFFCNSYDAIGAYRQKRINLDS
Sbjct: 541 VLTSGNRRGICANRYNPSNRKNHKNEKIYNNNYKYTKEPFFCNSYDAIGAYRQKRINLDS 600

Query: 601 PLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHIS 660
           PLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHIS
Sbjct: 601 PLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHIS 660

Query: 661 LYREIEEAIQGFCRACSYGT 677
           LYREIEEAIQGFCRACSYGT
Sbjct: 661 LYREIEEAIQGFCRACSYGT 680

[Close]
BLAST of PI0001259 vs. NCBI nr
Match: ASY96794.1 (RNA polymerase beta' subunit [Cucumis melo var. momordica] >ASY96968.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo] >ASY97316.1 RNA polymerase beta' subunit [Cucumis melo var. flexuosus] >ASY97055.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo] >ASY97229.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo])

HSP 1 Score: 1379.8 bits (3570), Expect = 0.0e+00
Identity = 674/681 (98.97%), Postives = 674/681 (98.97%), Query Frame = 0 

Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDV-----PIAKKPTFLRLRGSFEYEIQSWKYSIPLFF 180
           RLPSYIANLLDKPLKELEGLVYCDV     PIAKKPTFLRLRGSFEYEIQSWKYSIPLFF
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDVFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFF 180

Query: 181 TTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGR 240
           TTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGR
Sbjct: 181 TTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGR 240

Query: 241 RKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRV 300
           RKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRV
Sbjct: 241 RKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRV 300

Query: 301 IYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDV 360
           IYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDV
Sbjct: 301 IYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDV 360

Query: 361 IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHF 420
           IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHF
Sbjct: 361 IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHF 420

Query: 421 ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH 480
           ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Sbjct: 421 ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH 480

Query: 481 PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGL 540
           PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGL
Sbjct: 481 PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGL 540

Query: 541 YVLTSGNRRGICANRYNPSNRKNHKNEKIDNNNYKYTKEPFFCNSYDAIGAYRQKRINLD 600
           YVLTSGNRRGICANRYNPSNRKNHKN KI NNNYKYTKEPFFCNSYDAIGAYRQKRINLD
Sbjct: 541 YVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQKRINLD 600

Query: 601 SPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHI 660
           SPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHI
Sbjct: 601 SPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHI 660

Query: 661 SLYREIEEAIQGFCRACSYGT 677
           SLYREIEEAIQGFCRACSYGT
Sbjct: 661 SLYREIEEAIQGFCRACSYGT 681

[Close]
BLAST of PI0001259 vs. TAIR 10
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 1295.8 bits (3352), Expect = 0.0e+00
Identity = 627/680 (92.21%), Postives = 648/680 (95.29%), Query Frame = 0 

Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWA K +PNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWATKIIPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGD+KED KFCEQCGVEFVDSRIRRYQMGYIKL CPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDV----PIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT 180
           RLPSYIANLLDKPLKELEGLVYCD     PI KKPTFLRLRGSFEYEIQSWKYSIPLFFT
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFT 180

Query: 181 TQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRR 240
           TQGFD FRNREISTGAGAIREQLADLDLR+II+ SLVEWK+LGEEGP GNEWEDRK+ RR
Sbjct: 181 TQGFDIFRNREISTGAGAIREQLADLDLRIIIENSLVEWKQLGEEGPTGNEWEDRKIVRR 240

Query: 241 KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 300
           KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI+GGKLMSSDINELYRRVI
Sbjct: 241 KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIEGGKLMSSDINELYRRVI 300

Query: 301 YRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI 360
           YRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI
Sbjct: 301 YRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI 360

Query: 361 EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFA 420
           EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH A
Sbjct: 361 EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLA 420

Query: 421 SNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP 480
           SNIGVAKS+IREK+PIVWEILQEVMQGHPVLLNRAPTLHRLGIQ+FQPILVEGR ICLHP
Sbjct: 421 SNIGVAKSQIREKKPIVWEILQEVMQGHPVLLNRAPTLHRLGIQSFQPILVEGRTICLHP 480

Query: 481 LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLY 540
           LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLY
Sbjct: 481 LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLY 540

Query: 541 VLTSGNRRGICANRYNPSNRKNHKNEKIDNNNYKYTKEPFFCNSYDAIGAYRQKRINLDS 600
           VLTSG RRGICANRYNP NRKN++NE+I   NYKYTKEPFFCNSYDAIGAYRQK+INLDS
Sbjct: 541 VLTSGTRRGICANRYNPCNRKNYQNERIYETNYKYTKEPFFCNSYDAIGAYRQKKINLDS 600

Query: 601 PLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHIS 660
           PLWLRW+LDQRVIASRE PIEVHYES G +HEIY +YLIV+S+KKE  CIYIRTTVGHIS
Sbjct: 601 PLWLRWQLDQRVIASREVPIEVHYESFGNYHEIYAHYLIVRSVKKENFCIYIRTTVGHIS 660

Query: 661 LYREIEEAIQGFCRACSYGT 677
            YREIEEAIQGF +ACSY T
Sbjct: 661 FYREIEEAIQGFSQACSYDT 680

[Close]
BLAST of PI0001259 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-29
Identity = 88/310 (28.39%), Postives = 142/310 (45.81%), Query Frame = 0 

Query: 257 PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGEL 316
           P+WM+L +LP+ PP +RP + +D       D+      +I  N  L          P  +
Sbjct: 242 PDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENL--KRQEKNGAPAHI 301

Query: 317 VMCQEKLVQEAVDTLLDNGIRGQP-MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 376
           +    +L+Q  + T  DN + GQP       +  KS    ++ KEGR R  L+GKRVD+S
Sbjct: 302 ISEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 361

Query: 377 GRSVIVVGPSLSLHRCGLPREIAIEL--------FQTFLIRGLI--RQHFASNIGVAKSK 436
            R+VI   P++++   G+P  IA+ L        +    ++ L+    H       AK  
Sbjct: 362 ARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYI 421

Query: 437 IREKE----------------PIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEG 496
           IR+                   + +++ + +  G  VL NR P+LH++ I   +  ++  
Sbjct: 422 IRDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPY 481

Query: 497 RAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQ 540
               L+  V   +NADFDGD+M +HVP S E +AE   LM     ++S     P+    Q
Sbjct: 482 STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 541

[Close]
BLAST of PI0001259 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 124.8 bits (312), Expect = 2.7e-28
Identity = 88/308 (28.57%), Postives = 151/308 (49.03%), Query Frame = 0 

Query: 257 PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGEL 316
           PE +++  + V P  +RP + I G +   +D+    +++I  N +L  +L+   S+P  +
Sbjct: 250 PENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPKNM 309

Query: 317 VMCQEKLVQEAVDTLLDNGIRG-QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 376
            +     VQ  V   +++ +RG Q   + H          ++GK GRFR  L GKRV+++
Sbjct: 310 QVWD--TVQIEVARYINSEVRGCQNQPEEH--PLSGILQRLKGKGGRFRANLSGKRVEFT 369

Query: 377 GRSVIVVGPSLSLHRCGLPREIA-------------IELFQTFLIRGLIRQHFASN---- 436
           GR+VI   P+L +   G+P  +A             IE  +  +  G  +   A N    
Sbjct: 370 GRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYP 429

Query: 437 -------IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRA 496
                  +G  + +I ++  I   + + + +G  VL NR P+LHR+ I   +  ++  R 
Sbjct: 430 DGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRT 489

Query: 497 ICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDM 540
           +  +  VC  +NADFDGD+M +HVP + EA+ EA  LM    NL +   G+ +   TQD 
Sbjct: 490 LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQDF 549

[Close]
BLAST of PI0001259 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 124.8 bits (312), Expect = 2.7e-28
Identity = 88/308 (28.57%), Postives = 151/308 (49.03%), Query Frame = 0 

Query: 257 PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGEL 316
           PE +++  + V P  +RP + I G +   +D+    +++I  N +L  +L+   S+P  +
Sbjct: 260 PENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPKNM 319

Query: 317 VMCQEKLVQEAVDTLLDNGIRG-QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 376
            +     VQ  V   +++ +RG Q   + H          ++GK GRFR  L GKRV+++
Sbjct: 320 QVWD--TVQIEVARYINSEVRGCQNQPEEH--PLSGILQRLKGKGGRFRANLSGKRVEFT 379

Query: 377 GRSVIVVGPSLSLHRCGLPREIA-------------IELFQTFLIRGLIRQHFASN---- 436
           GR+VI   P+L +   G+P  +A             IE  +  +  G  +   A N    
Sbjct: 380 GRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYP 439

Query: 437 -------IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRA 496
                  +G  + +I ++  I   + + + +G  VL NR P+LHR+ I   +  ++  R 
Sbjct: 440 DGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRT 499

Query: 497 ICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDM 540
           +  +  VC  +NADFDGD+M +HVP + EA+ EA  LM    NL +   G+ +   TQD 
Sbjct: 500 LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQDF 559

[Close]
BLAST of PI0001259 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 87.8 bits (216), Expect = 3.6e-17
Identity = 82/317 (25.87%), Postives = 139/317 (43.85%), Query Frame = 0 

Query: 267 VLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQE 326
           V P + RP     G  +M         +VI  NN L +  T         V+ + + +QE
Sbjct: 348 VPPTKFRP-PTTGGDSVMEHPQTVGLNKVIESNNILGNACTNKLDQ--SKVIFRWRNLQE 407

Query: 327 AVDTLLDNGIRG-QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPS 386
           +V+ L D+     Q  RD           ++E KEG FR+ ++GKRV+++ RSVI   P 
Sbjct: 408 SVNVLFDSKTATVQSQRDS-----SGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPY 467

Query: 387 LSLHRCGLPREIAIEL-------------FQTFLIRGLI----RQHFASNIGVAKSKIRE 446
           ++++  G+P   A++L              +  +I G        H++      K    E
Sbjct: 468 IAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKSSTMKLPSTE 527

Query: 447 K--EPIVWEIL-----------------------QEVMQGHPVLLNRAPTLHRLGIQAFQ 506
           K    I  ++L                       + +  G  VL+NR PTLH+  + A +
Sbjct: 528 KARRAIARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHK 587

Query: 507 PILVEG-RAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGD 540
             +++G + + LH   C  +NADFDGD+M VH P    ++AEA  ++ ++      + G+
Sbjct: 588 VRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGE 647

The following BLAST results are available for this feature:
BLAST of PI0001259 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZP20.0e+0099.12DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE... [more]
B1A9260.0e+0094.71DNA-directed RNA polymerase subunit beta' OS=Carica papaya OX=3649 GN=rpoC1 PE=3... [more]
Q0ZJ290.0e+0093.55DNA-directed RNA polymerase subunit beta' OS=Vitis vinifera OX=29760 GN=rpoC1 PE... [more]
Q49L070.0e+0093.40DNA-directed RNA polymerase subunit beta' OS=Eucalyptus globulus subsp. globulus... [more]
Q68S150.0e+0093.98DNA-directed RNA polymerase subunit beta' OS=Panax ginseng OX=4054 GN=rpoC1 PE=3... [more]
BLAST of PI0001259 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A286SB830.0e+0099.12DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus var. hardwickii OX=... [more]
A0A249RXI60.0e+0099.12DNA-directed RNA polymerase subunit beta' OS=Cucumis melo subsp. agrestis OX=217... [more]
W8E6U80.0e+0099.12DNA-directed RNA polymerase subunit gamma OS=Cucumis hystrix OX=396994 GN=rpoC1 ... [more]
A0A343UM230.0e+0099.12DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus var. sativus OX=869... [more]
A0A6H0ES080.0e+0099.12DNA-directed RNA polymerase subunit beta' OS=Ampelosycios humblotii OX=386639 GN... [more]
BLAST of PI0001259 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009752657.10.0e+0099.12RNA polymerase beta' subunit [Ampelosycios humblotii] >QIT05138.1 RNA polymerase... [more]
YP_009004035.10.0e+0099.12RNA polymerase beta [Cucumis hystrix] >AHJ61377.1 RNA polymerase beta [Cucumis h... [more]
AAZ94642.10.0e+0099.12RNA polymerase beta I subunit [Cucumis sativus][more]
Q4VZP2.30.0e+0099.12RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName: Full=PEP; AltN... [more]
ASY96794.10.0e+0098.97RNA polymerase beta' subunit [Cucumis melo var. momordica] >ASY96968.1 RNA polym... [more]
BLAST of PI0001259 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00180.10.0e+0092.21DNA-directed RNA polymerase family protein [more]
AT4G35800.11.1e-2928.39RNA polymerase II large subunit [more]
AT5G60040.12.7e-2828.57nuclear RNA polymerase C1 [more]
AT5G60040.22.7e-2828.57nuclear RNA polymerase C1 [more]
AT3G57660.13.6e-1725.87nuclear RNA polymerase A1 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006592RNA polymerase, N-terminalSMARTSM00663rpolaneu7coord: 258..539
e-value: 2.9E-156
score: 535.1
NoneNo IPR availableGENE3D2.40.40.20coord: 357..510
e-value: 2.8E-46
score: 158.7
NoneNo IPR availableGENE3D1.10.40.90coord: 398..442
e-value: 4.0E-16
score: 60.9
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 5..639
NoneNo IPR availablePANTHERPTHR19376:SF54DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'coord: 5..639
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 7..666
IPR000722RNA polymerase, alpha subunitPFAMPF00623RNA_pol_Rpb1_2coord: 425..509
e-value: 1.8E-26
score: 93.3
coord: 369..416
e-value: 4.3E-7
score: 30.3
IPR042102RNA polymerase Rpb1, domain 3 superfamilyGENE3D1.10.274.100RNA polymerase Rpb1, domain 3coord: 514..672
e-value: 1.7E-24
score: 88.9
IPR044893RNA polymerase Rpb1, clamp domain superfamilyGENE3D4.10.860.120RNA polymerase II, clamp domaincoord: 3..136
e-value: 7.1E-15
score: 56.8
IPR007080RNA polymerase Rpb1, domain 1PFAMPF04997RNA_pol_Rpb1_1coord: 8..367
e-value: 2.0E-50
score: 171.9
IPR034678DNA-directed RNA polymerase subunit RpoC1HAMAPMF_01323RNApol_bact_RpoC1coord: 1..667
score: 26.619942

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0001259.1PI0001259.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0009507 chloroplast
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0008270 zinc ion binding