PI0001255 (gene) Melon (PI 482460) v1

Overview


Name	PI0001255
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr02: 11598841 .. 11600528 (+)
RNA-Seq Expression	PI0001255
Synteny	PI0001255

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCAACAAATTTCTCATCTCACAACCGCAATTGGTAAGCTAGAAGGAAAAGGTAAACTTTCGGCCCAACCGGATCATGCAAATATAAGTGCCATCTCACTTAGAAGTGGTAAAATTCTTGAAACCCCTCCAAGTGAAGAAAAAAAGGTAACTTCTATCCCTATCCTTCTTGAAAATAATGATGAGAAAAAGGAAGAAAAGGTTGAAACAAATGATTTACCATCCAATTCTAATAAAGGTAAATCTCCTATTCTTGATTTTACCCCTTATGTTCCTAAAGCTCCTTTTCCTTCTAGGTTGGCTCCAAAGAAAAAGGAATCACCCAAGGAAGAAGAACTCTTGAAAATGTTTAGAAAGGTGCAAATCAATTTGCCTTTGCTTGATGCAATCCAACAAGTTCCAAGGTATGCAAAGTTTCTTAAGGAGTTGTGCACCAATAAGAGGAAAATCAAAGAAAAACCCATGGTAAGTCATAATGTTTCCGCTCTTTTAAAAAATAGTATTCTGGAAAAACAAAATGACCCCGGTATGTTTTCTCTTTCTTGCATAATAGGAAATAGACCAATTTCTCATGCAATGCTTGACTTAGGAGCATCCATAAATGTCATGCCATTTAGTGTTTTCAAAGATCTAGAACTTAATAACTTGCAAAAAACAAATGTATGCATACAATTAGCGGATAGATCTTTTATTTCACCGTTAGGAATTGTTGAAGATGTTCTTGTAAAAATAGACAAATTAATTTTTCCTGCAGACTTTTACATTTTAGAAATGAATGAAGCATGTTCAAAACATTCTCACTCAATTCTATTAGGAAGACCTTTTCTAAAAACTGCAAAAGCAATTATAAATGTTGATAAAGGTTCTTTAAGTGTAGAATTTGATGGAGATGTGGTTAAAGTTAATATTTTTGAATCAATGAAATATCCAGATGAATGCCTATCTTTATGTTCAATTGAATTGCATGATGAAATTGAAGAAATGTCTAATAATGATGAATTTTTTGAACAAGAACTTGTTGAGAATAAAGAGTTGGTAGAAGTAGACTTAGAATTTAATCTTGAGAAAAATAGTTGTGATAATCTTTTCTTTTCTCCAAAGGAAAAAGGAATTGAGCTTAAAGCTCTCCCACCACACATGAAGTACCTGTTCTTAGGAGAAAAGAATACGTTTCCTGTGGTCATTTCTAAAGAACTAGACCAAAGTCAAGAAGAAAGACTTATTGAAGTCTTGAAAAAGAAAAAGAAAGCAATTGGATGGACTTTGGAAGATTTAAAAGGTATTCCTCCTTCATTTTGCACACATAGAATTATCTTAGAGGAGGGAGCCAAAGACAAAGTCCAATGACAACTCGTATTTTATACAAGTTATTGTGGCCTTTTAGGTAGAATAATGAAGATATAATGCAGTAGAAAAAGAGAAATTAATATTTATTAGCGATTGTAAATGATAAAGTGTATCGCAAAGAGTAAAAGAGCCAAATGCCTGTTTTACTATGATTTATGTAGGATTTTTAGGCAAATAAGAGGTATTCACACGAACAAGCTTCAAGCGAGGAACCACGCGGGCAACCAGGCGACCTTGAACGCATGGTTAGGCGGACCGGAGCTATAGCCGACAAGCTAGCCCGTGTAGATGTCAGAAAAGGACACCTGCATCAATGTTGCAGGTGGCAGAAGAATTAA

mRNA sequence

ATGAAGCAACAAATTTCTCATCTCACAACCGCAATTGGTAAGCTAGAAGGAAAAGGTAAACTTTCGGCCCAACCGGATCATGCAAATATAAGTGCCATCTCACTTAGAAGTGGTAAAATTCTTGAAACCCCTCCAAGTGAAGAAAAAAAGGCAAATAAGAGGTATTCACACGAACAAGCTTCAAGCGAGGAACCACGCGGGCAACCAGGCGACCTTGAACGCATGGTTAGGCGGACCGGAGCTATAGCCGACAAGCTAGCCCGTGTAGATGTCAGAAAAGGACACCTGCATCAATGTTGCAGGTGGCAGAAGAATTAA

Coding sequence (CDS)

ATGAAGCAACAAATTTCTCATCTCACAACCGCAATTGGTAAGCTAGAAGGAAAAGGTAAACTTTCGGCCCAACCGGATCATGCAAATATAAGTGCCATCTCACTTAGAAGTGGTAAAATTCTTGAAACCCCTCCAAGTGAAGAAAAAAAGGCAAATAAGAGGTATTCACACGAACAAGCTTCAAGCGAGGAACCACGCGGGCAACCAGGCGACCTTGAACGCATGGTTAGGCGGACCGGAGCTATAGCCGACAAGCTAGCCCGTGTAGATGTCAGAAAAGGACACCTGCATCAATGTTGCAGGTGGCAGAAGAATTAA

Protein sequence

MKQQISHLTTAIGKLEGKGKLSAQPDHANISAISLRSGKILETPPSEEKKANKRYSHEQASSEEPRGQPGDLERMVRRTGAIADKLARVDVRKGHLHQCCRWQKN

Homology

[Close]

BLAST of PI0001255 vs. ExPASy TrEMBL
Match: A0A5D3CZ23 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00950 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.1e-12
Identity = 39/50 (78.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   MKQQISHLTTAIGKLEGKGKLSAQPDHANISAISLRSGKILETPPSEEKK 51
           MKQQ++ LTTAI K++GKGKLSAQPDHAN+SAISLRSGKIL+TP ++EKK
Sbjct: 273 MKQQMTQLTTAISKMDGKGKLSAQPDHANVSAISLRSGKILDTPTTKEKK 322

[Close]

BLAST of PI0001255 vs. ExPASy TrEMBL
Match: A0A5D3C4I5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold572G00210 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 6.1e-12
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MKQQISHLTTAIGKLEGKGKLSAQPDHANISAISLRSGKILETPPSEEKKANKR 55
           MKQQ++ LTTAI K++GKGKLS QPDHAN+SAISLRSGKIL+TP ++EKK   +
Sbjct: 126 MKQQMTQLTTAISKMDGKGKLSTQPDHANVSAISLRSGKILDTPTTKEKKVTSK 179

[Close]

BLAST of PI0001255 vs. ExPASy TrEMBL
Match: A0A5D3CFE7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00840 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.9e-12
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MKQQISHLTTAIGKLEGKGKLSAQPDHANISAISLRSGKILETPPSEEKKANKR 55
           MKQQ++ LTTAI K++GKGKL AQPDHAN+SAISLRSGKIL+TP ++EKK   +
Sbjct: 288 MKQQMTQLTTAISKMDGKGKLPAQPDHANVSAISLRSGKILDTPTTKEKKVGSK 341

[Close]

BLAST of PI0001255 vs. ExPASy TrEMBL
Match: A0A5D3DS57 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002030 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.9e-12
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MKQQISHLTTAIGKLEGKGKLSAQPDHANISAISLRSGKILETPPSEEKKANKR 55
           MKQQ++ LTTAI K++GKGKL AQPDHAN+SAISLRSGKIL+TP ++EKK   +
Sbjct: 228 MKQQMTQLTTAISKMDGKGKLPAQPDHANVSAISLRSGKILDTPTTKEKKVTSK 281

[Close]

BLAST of PI0001255 vs. ExPASy TrEMBL
Match: A0A5A7V594 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G001880 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.9e-12
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MKQQISHLTTAIGKLEGKGKLSAQPDHANISAISLRSGKILETPPSEEKKANKR 55
           MKQQ++ LTTAI K++GKGKL AQPDHAN+SAISLRSGKIL+TP ++EKK   +
Sbjct: 228 MKQQMTQLTTAISKMDGKGKLPAQPDHANVSAISLRSGKILDTPTTKEKKVTSK 281

[Close]

BLAST of PI0001255 vs. NCBI nr
Match: KAA0032001.1 (uncharacterized protein E6C27_scaffold134G00970 [Cucumis melo var. makuwa] >TYK16822.1 uncharacterized protein E5676_scaffold96G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 4.3e-12
Identity = 39/50 (78.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   MKQQISHLTTAIGKLEGKGKLSAQPDHANISAISLRSGKILETPPSEEKK 51
           MKQQ++ LTTAI K++GKGKLSAQPDHAN+SAISLRSGKIL+TP ++EKK
Sbjct: 273 MKQQMTQLTTAISKMDGKGKLSAQPDHANVSAISLRSGKILDTPTTKEKK 322

[Close]

BLAST of PI0001255 vs. NCBI nr
Match: KAA0066512.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK06128.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-11
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MKQQISHLTTAIGKLEGKGKLSAQPDHANISAISLRSGKILETPPSEEKKANKR 55
           MKQQ++ LTTAI K++GKGKLS QPDHAN+SAISLRSGKIL+TP ++EKK   +
Sbjct: 126 MKQQMTQLTTAISKMDGKGKLSTQPDHANVSAISLRSGKILDTPTTKEKKVTSK 179

[Close]

BLAST of PI0001255 vs. NCBI nr
Match: TYK26581.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-11
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MKQQISHLTTAIGKLEGKGKLSAQPDHANISAISLRSGKILETPPSEEKKANKR 55
           MKQQ++ LTTAI K++GKGKL AQPDHAN+SAISLRSGKIL+TP ++EKK   +
Sbjct: 228 MKQQMTQLTTAISKMDGKGKLPAQPDHANVSAISLRSGKILDTPTTKEKKVTSK 281

[Close]

BLAST of PI0001255 vs. NCBI nr
Match: KAA0062400.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-11
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MKQQISHLTTAIGKLEGKGKLSAQPDHANISAISLRSGKILETPPSEEKKANKR 55
           MKQQ++ LTTAI K++GKGKL AQPDHAN+SAISLRSGKIL+TP ++EKK   +
Sbjct: 228 MKQQMTQLTTAISKMDGKGKLPAQPDHANVSAISLRSGKILDTPTTKEKKVTSK 281

[Close]

BLAST of PI0001255 vs. NCBI nr
Match: TYK10613.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-11
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MKQQISHLTTAIGKLEGKGKLSAQPDHANISAISLRSGKILETPPSEEKKANKR 55
           MKQQ++ LTTAI K++GKGKL AQPDHAN+SAISLRSGKIL+TP ++EKK   +
Sbjct: 288 MKQQMTQLTTAISKMDGKGKLPAQPDHANVSAISLRSGKILDTPTTKEKKVGSK 341

The following BLAST results are available for this feature:

BLAST of PI0001255 vs.


Match Name	E-value	Identity	Description

BLAST of PI0001255 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CZ23	2.1e-12	78.00	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3C4I5	6.1e-12	70.37	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3CFE7	7.9e-12	70.37	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3DS57	7.9e-12	70.37	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7V594	7.9e-12	70.37	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of PI0001255 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032001.1	4.3e-12	78.00	uncharacterized protein E6C27_scaffold134G00970 [Cucumis melo var. makuwa] >TYK1...	[more]
KAA0066512.1	1.3e-11	70.37	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK06128.1 retrotranspos...	[more]
TYK26581.1	1.6e-11	70.37	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0062400.1	1.6e-11	70.37	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK10613.1	1.6e-11	70.37	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0001255 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0001255.1	PI0001255.1	mRNA