PI0001165 (gene) Melon (PI 482460) v1

Overview


Name	PI0001165
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ty3/gypsy retrotransposon protein
Location	chr02: 19581334 .. 19581810 (+)
RNA-Seq Expression	PI0001165
Synteny	PI0001165

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCCACAGAGAAAGAGATAGTGGACTTGAAAGAGATACTCCTTGGATTGAAAATGAGCATTGACCGTCTATCCGAAGACATAAAGGAGAACAGTTCTACGCGGAAGAAGGAAGAATCAGGGACATTTGATGCCTCTGTGCTGAAACTGAAAGGGAAGGCAGAGGAAGTGGAAACGGCTCAAACCGGTGAACCAATGACTGGGGATCGAAGCCGATATAAAAAGTTAGACATGCCGGTTTTCAGTGGGGTTAACCCAAAATCATGGATATATCGTGTAGAACATTTTTTTGAAATCAATGAGTTGATCGATTGTGAAAAGGTCAAGGTGGTTGTGGTGAGCTTTGCACCTGATGAAGTGAGCTGGTTCCGTTGGAGCAACAACAGGAAGCGAGTGACGTCATGGGAGGATTTGAAACAGAGAATGCTCACCTATTTCCAACCCACGGGGAGGGAAGCCTGGGAGCTAGGTTGA

mRNA sequence

ATGGCATCCACAGAGAAAGAGATAGTGGACTTGAAAGAGATACTCCTTGGATTGAAAATGAGCATTGACCGTCTATCCGAAGACATAAAGGAGAACAGTTCTACGCGGAAGAAGGAAGAATCAGGGACATTTGATGCCTCTGTGCTGAAACTGAAAGGGAAGGCAGAGGAAGTGGAAACGGCTCAAACCGGTGAACCAATGACTGGGGATCGAAGCCGATATAAAAAGTTAGACATGCCGGTTTTCAGTGGGGTTAACCCAAAATCATGGATATATCGTGTAGAACATTTTTTTGAAATCAATGAGTTGATCGATTGTGAAAAGGTCAAGGTGGTTGTGGTGAGCTTTGCACCTGATGAAGTGAGCTGGTTCCGTTGGAGCAACAACAGGAAGCGAGTGACGTCATGGGAGGATTTGAAACAGAGAATGCTCACCTATTTCCAACCCACGGGGAGGGAAGCCTGGGAGCTAGGTTGA

Coding sequence (CDS)

ATGGCATCCACAGAGAAAGAGATAGTGGACTTGAAAGAGATACTCCTTGGATTGAAAATGAGCATTGACCGTCTATCCGAAGACATAAAGGAGAACAGTTCTACGCGGAAGAAGGAAGAATCAGGGACATTTGATGCCTCTGTGCTGAAACTGAAAGGGAAGGCAGAGGAAGTGGAAACGGCTCAAACCGGTGAACCAATGACTGGGGATCGAAGCCGATATAAAAAGTTAGACATGCCGGTTTTCAGTGGGGTTAACCCAAAATCATGGATATATCGTGTAGAACATTTTTTTGAAATCAATGAGTTGATCGATTGTGAAAAGGTCAAGGTGGTTGTGGTGAGCTTTGCACCTGATGAAGTGAGCTGGTTCCGTTGGAGCAACAACAGGAAGCGAGTGACGTCATGGGAGGATTTGAAACAGAGAATGCTCACCTATTTCCAACCCACGGGGAGGGAAGCCTGGGAGCTAGGTTGA

Protein sequence

MASTEKEIVDLKEILLGLKMSIDRLSEDIKENSSTRKKEESGTFDASVLKLKGKAEEVETAQTGEPMTGDRSRYKKLDMPVFSGVNPKSWIYRVEHFFEINELIDCEKVKVVVVSFAPDEVSWFRWSNNRKRVTSWEDLKQRMLTYFQPTGREAWELG

Homology

[Close]

BLAST of PI0001165 vs. ExPASy TrEMBL
Match: A0A5A7TII1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G001860 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 5.3e-44
Identity = 90/156 (57.69%), Postives = 121/156 (77.56%), Query Frame = 0


Query: 1   MASTEKEIVDLKEILLGLKMSIDRLSEDIKENSSTRKKEESGTFDASVLKLKGKAEEVET 60
           +  TEKE++ LKE++L +K S+DRL+++++EN S +KKEESGT D S++K+KGK EE + 
Sbjct: 10  LEGTEKEVLSLKEMMLEMKKSMDRLADELRENQSYKKKEESGTSDGSIMKMKGKMEETDI 69

Query: 61  AQTGEPMTG--DRSRYKKLDMPVFSGVNPKSWIYRVEHFFEINELIDCEKVKVVVVSFAP 120
             TGE  T   DRS+YKKL+MP+F G NP+SW+YR EHFFEIN L + EKVKV VVSF  
Sbjct: 70  --TGEVNTHLVDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPEAEKVKVAVVSFGQ 129

Query: 121 DEVSWFRWSNNRKRVTSWEDLKQRMLTYFQPTGREA 155
           DEV W+RWS+NRK+V SWEDLK RM  +F+ T +++
Sbjct: 130 DEVDWYRWSHNRKKVESWEDLKTRMFEFFRDTRQKS 163

[Close]

BLAST of PI0001165 vs. ExPASy TrEMBL
Match: A0A5D3CXP0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00230 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 5.3e-44
Identity = 90/156 (57.69%), Postives = 121/156 (77.56%), Query Frame = 0


Query: 1   MASTEKEIVDLKEILLGLKMSIDRLSEDIKENSSTRKKEESGTFDASVLKLKGKAEEVET 60
           +  TEKE++ LKE++L +K S+DRL+++++EN S +KKEESGT D S++K+KGK EE + 
Sbjct: 10  LEGTEKEVLSLKEMMLEMKKSMDRLADELRENQSYKKKEESGTSDGSIMKMKGKMEETDI 69

Query: 61  AQTGEPMTG--DRSRYKKLDMPVFSGVNPKSWIYRVEHFFEINELIDCEKVKVVVVSFAP 120
             TGE  T   DRS+YKKL+MP+F G NP+SW+YR EHFFEIN L + EKVKV VVSF  
Sbjct: 70  --TGEVNTHLVDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPEAEKVKVAVVSFGQ 129

Query: 121 DEVSWFRWSNNRKRVTSWEDLKQRMLTYFQPTGREA 155
           DEV W+RWS+NRK+V SWEDLK RM  +F+ T +++
Sbjct: 130 DEVDWYRWSHNRKKVESWEDLKTRMFEFFRDTRQKS 163

[Close]

BLAST of PI0001165 vs. ExPASy TrEMBL
Match: A0A5A7SW86 (Putative membrane-bound O-acyltransferase C24H6.01c isoform X5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00460 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 6.9e-44
Identity = 87/154 (56.49%), Postives = 119/154 (77.27%), Query Frame = 0


Query: 1   MASTEKEIVDLKEILLGLKMSIDRLSEDIKENSSTRKKEESGTFDASVLKLKGKAEEVET 60
           +  TEKE++ LKE++  +K +++RL+E+++E+   +KKEESGTFD  V+KLKGK EE++ 
Sbjct: 10  LEGTEKEVLGLKEMMREMKKTMERLAEEMRESQYYKKKEESGTFDGFVMKLKGKMEELDV 69

Query: 61  AQTGEPMTGDRSRYKKLDMPVFSGVNPKSWIYRVEHFFEINELIDCEKVKVVVVSFAPDE 120
                  T DRS+YKKL+MP+F G NP+SW+YRVEHFFEIN L + EKVKVVVVSF  DE
Sbjct: 70  TAEVNTNTVDRSKYKKLEMPMFLGENPESWVYRVEHFFEINNLSEAEKVKVVVVSFGQDE 129

Query: 121 VSWFRWSNNRKRVTSWEDLKQRMLTYFQPTGREA 155
           V W+RWS+N K+V SWEDLK RM  +F+ TG+++
Sbjct: 130 VDWYRWSHNPKKVESWEDLKTRMFEFFRDTGQKS 163

[Close]

BLAST of PI0001165 vs. ExPASy TrEMBL
Match: A0A5D3DTN9 (Putative membrane-bound O-acyltransferase C24H6.01c isoform X5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00070 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 6.9e-44
Identity = 87/154 (56.49%), Postives = 119/154 (77.27%), Query Frame = 0


Query: 1   MASTEKEIVDLKEILLGLKMSIDRLSEDIKENSSTRKKEESGTFDASVLKLKGKAEEVET 60
           +  TEKE++ LKE++  +K +++RL+E+++E+   +KKEESGTFD  V+KLKGK EE++ 
Sbjct: 10  LEGTEKEVLGLKEMMREMKKTMERLAEEMRESQYYKKKEESGTFDGFVMKLKGKMEELDV 69

Query: 61  AQTGEPMTGDRSRYKKLDMPVFSGVNPKSWIYRVEHFFEINELIDCEKVKVVVVSFAPDE 120
                  T DRS+YKKL+MP+F G NP+SW+YRVEHFFEIN L + EKVKVVVVSF  DE
Sbjct: 70  TAEVNTNTVDRSKYKKLEMPMFLGENPESWVYRVEHFFEINNLSEAEKVKVVVVSFGQDE 129

Query: 121 VSWFRWSNNRKRVTSWEDLKQRMLTYFQPTGREA 155
           V W+RWS+N K+V SWEDLK RM  +F+ TG+++
Sbjct: 130 VDWYRWSHNPKKVESWEDLKTRMFEFFRDTGQKS 163

[Close]

BLAST of PI0001165 vs. ExPASy TrEMBL
Match: A0A1S3C415 (uncharacterized protein LOC103496243 OS=Cucumis melo OX=3656 GN=LOC103496243 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 6.9e-44
Identity = 87/154 (56.49%), Postives = 119/154 (77.27%), Query Frame = 0


Query: 1   MASTEKEIVDLKEILLGLKMSIDRLSEDIKENSSTRKKEESGTFDASVLKLKGKAEEVET 60
           +  TEKE++ LKE++  +K +++RL+E+++E+   +KKEESGTFD  V+KLKGK EE++ 
Sbjct: 10  LEGTEKEVLGLKEMMREMKKTMERLAEEMRESQYYKKKEESGTFDGFVMKLKGKMEELDV 69

Query: 61  AQTGEPMTGDRSRYKKLDMPVFSGVNPKSWIYRVEHFFEINELIDCEKVKVVVVSFAPDE 120
                  T DRS+YKKL+MP+F G NP+SW+YRVEHFFEIN L + EKVKVVVVSF  DE
Sbjct: 70  TAEVNTNTVDRSKYKKLEMPMFLGENPESWVYRVEHFFEINNLSEAEKVKVVVVSFGQDE 129

Query: 121 VSWFRWSNNRKRVTSWEDLKQRMLTYFQPTGREA 155
           V W+RWS+N K+V SWEDLK RM  +F+ TG+++
Sbjct: 130 VDWYRWSHNPKKVESWEDLKTRMFEFFRDTGQKS 163

[Close]

BLAST of PI0001165 vs. NCBI nr
Match: XP_031745528.1 (uncharacterized protein LOC116405915 [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 2.4e-46
Identity = 90/151 (59.60%), Postives = 121/151 (80.13%), Query Frame = 0


Query: 4   TEKEIVDLKEILLGLKMSIDRLSEDIKENSSTRKKEESGTFDASVLKLKGKAEEVETAQT 63
           TEKEI+ LKE+LL +K +++R++ED++EN S +++EESGT D SV+KLKGKAEE +    
Sbjct: 13  TEKEIMGLKEMLLEMKKAMERMAEDLRENHSYKRREESGTSDGSVMKLKGKAEETDVHNE 72

Query: 64  GEPMTGDRSRYKKLDMPVFSGVNPKSWIYRVEHFFEINELIDCEKVKVVVVSFAPDEVSW 123
           G    GDRS+YKKL+MP+F G NP+SW+YR EHFFEIN L + EKVKV VVSF  DEV W
Sbjct: 73  GNLTMGDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPETEKVKVAVVSFGQDEVDW 132

Query: 124 FRWSNNRKRVTSWEDLKQRMLTYFQPTGREA 155
           +RWS+NR++V SWEDLK+RM  +F+ TG+++
Sbjct: 133 YRWSHNRRKVESWEDLKERMFDFFKDTGQKS 163

[Close]

BLAST of PI0001165 vs. NCBI nr
Match: KAA0041225.1 (uncharacterized protein E6C27_scaffold128G001860 [Cucumis melo var. makuwa])

HSP 1 Score: 187.2 bits (474), Expect = 1.1e-43
Identity = 90/156 (57.69%), Postives = 121/156 (77.56%), Query Frame = 0


Query: 1   MASTEKEIVDLKEILLGLKMSIDRLSEDIKENSSTRKKEESGTFDASVLKLKGKAEEVET 60
           +  TEKE++ LKE++L +K S+DRL+++++EN S +KKEESGT D S++K+KGK EE + 
Sbjct: 10  LEGTEKEVLSLKEMMLEMKKSMDRLADELRENQSYKKKEESGTSDGSIMKMKGKMEETDI 69

Query: 61  AQTGEPMTG--DRSRYKKLDMPVFSGVNPKSWIYRVEHFFEINELIDCEKVKVVVVSFAP 120
             TGE  T   DRS+YKKL+MP+F G NP+SW+YR EHFFEIN L + EKVKV VVSF  
Sbjct: 70  --TGEVNTHLVDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPEAEKVKVAVVSFGQ 129

Query: 121 DEVSWFRWSNNRKRVTSWEDLKQRMLTYFQPTGREA 155
           DEV W+RWS+NRK+V SWEDLK RM  +F+ T +++
Sbjct: 130 DEVDWYRWSHNRKKVESWEDLKTRMFEFFRDTRQKS 163

[Close]

BLAST of PI0001165 vs. NCBI nr
Match: XP_031742100.1 (uncharacterized protein LOC116404055 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 1.1e-43
Identity = 88/151 (58.28%), Postives = 115/151 (76.16%), Query Frame = 0


Query: 4   TEKEIVDLKEILLGLKMSIDRLSEDIKENSSTRKKEESGTFDASVLKLKGKAEEVETAQT 63
           TEKEI+ LKE++L +K S+DR++ +++EN   +KKEE+GT D   LKLKGK EE  T   
Sbjct: 13  TEKEIMSLKEMMLEMKKSMDRMTGELRENHGAKKKEEAGTTDDIRLKLKGKLEEAGTTVE 72

Query: 64  GEPMTGDRSRYKKLDMPVFSGVNPKSWIYRVEHFFEINELIDCEKVKVVVVSFAPDEVSW 123
               + DRS+YKKL+MP+F+GVNP+SW YR EHFF+IN+L + EKVKV VVSF  +EV W
Sbjct: 73  SGGSSADRSKYKKLEMPLFTGVNPESWAYRAEHFFDINDLPEAEKVKVAVVSFGQEEVDW 132

Query: 124 FRWSNNRKRVTSWEDLKQRMLTYFQPTGREA 155
           FRWSN RKRV SWEDLK+RM  +F  TG+++
Sbjct: 133 FRWSNRRKRVESWEDLKERMFDFFNDTGQQS 163

[Close]

BLAST of PI0001165 vs. NCBI nr
Match: TYK16028.1 (uncharacterized protein E5676_scaffold32G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 187.2 bits (474), Expect = 1.1e-43
Identity = 90/156 (57.69%), Postives = 121/156 (77.56%), Query Frame = 0


Query: 1   MASTEKEIVDLKEILLGLKMSIDRLSEDIKENSSTRKKEESGTFDASVLKLKGKAEEVET 60
           +  TEKE++ LKE++L +K S+DRL+++++EN S +KKEESGT D S++K+KGK EE + 
Sbjct: 10  LEGTEKEVLSLKEMMLEMKKSMDRLADELRENQSYKKKEESGTSDGSIMKMKGKMEETDI 69

Query: 61  AQTGEPMTG--DRSRYKKLDMPVFSGVNPKSWIYRVEHFFEINELIDCEKVKVVVVSFAP 120
             TGE  T   DRS+YKKL+MP+F G NP+SW+YR EHFFEIN L + EKVKV VVSF  
Sbjct: 70  --TGEVNTHLVDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPEAEKVKVAVVSFGQ 129

Query: 121 DEVSWFRWSNNRKRVTSWEDLKQRMLTYFQPTGREA 155
           DEV W+RWS+NRK+V SWEDLK RM  +F+ T +++
Sbjct: 130 DEVDWYRWSHNRKKVESWEDLKTRMFEFFRDTRQKS 163

[Close]

BLAST of PI0001165 vs. NCBI nr
Match: XP_008456244.1 (PREDICTED: uncharacterized protein LOC103496243 [Cucumis melo])

HSP 1 Score: 186.8 bits (473), Expect = 1.4e-43
Identity = 87/154 (56.49%), Postives = 119/154 (77.27%), Query Frame = 0


Query: 1   MASTEKEIVDLKEILLGLKMSIDRLSEDIKENSSTRKKEESGTFDASVLKLKGKAEEVET 60
           +  TEKE++ LKE++  +K +++RL+E+++E+   +KKEESGTFD  V+KLKGK EE++ 
Sbjct: 10  LEGTEKEVLGLKEMMREMKKTMERLAEEMRESQYYKKKEESGTFDGFVMKLKGKMEELDV 69

Query: 61  AQTGEPMTGDRSRYKKLDMPVFSGVNPKSWIYRVEHFFEINELIDCEKVKVVVVSFAPDE 120
                  T DRS+YKKL+MP+F G NP+SW+YRVEHFFEIN L + EKVKVVVVSF  DE
Sbjct: 70  TAEVNTNTVDRSKYKKLEMPMFLGENPESWVYRVEHFFEINNLSEAEKVKVVVVSFGQDE 129

Query: 121 VSWFRWSNNRKRVTSWEDLKQRMLTYFQPTGREA 155
           V W+RWS+N K+V SWEDLK RM  +F+ TG+++
Sbjct: 130 VDWYRWSHNPKKVESWEDLKTRMFEFFRDTGQKS 163

The following BLAST results are available for this feature:

BLAST of PI0001165 vs.


Match Name	E-value	Identity	Description

BLAST of PI0001165 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TII1	5.3e-44	57.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CXP0	5.3e-44	57.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SW86	6.9e-44	56.49	Putative membrane-bound O-acyltransferase C24H6.01c isoform X5 OS=Cucumis melo v...	[more]
A0A5D3DTN9	6.9e-44	56.49	Putative membrane-bound O-acyltransferase C24H6.01c isoform X5 OS=Cucumis melo v...	[more]
A0A1S3C415	6.9e-44	56.49	uncharacterized protein LOC103496243 OS=Cucumis melo OX=3656 GN=LOC103496243 PE=...	[more]

BLAST of PI0001165 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031745528.1	2.4e-46	59.60	uncharacterized protein LOC116405915 [Cucumis sativus]	[more]
KAA0041225.1	1.1e-43	57.69	uncharacterized protein E6C27_scaffold128G001860 [Cucumis melo var. makuwa]	[more]
XP_031742100.1	1.1e-43	58.28	uncharacterized protein LOC116404055 [Cucumis sativus]	[more]
TYK16028.1	1.1e-43	57.69	uncharacterized protein E5676_scaffold32G00230 [Cucumis melo var. makuwa]	[more]
XP_008456244.1	1.4e-43	56.49	PREDICTED: uncharacterized protein LOC103496243 [Cucumis melo]	[more]

BLAST of PI0001165 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0001165.1	PI0001165.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0071704	organic substance metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0016740	transferase activity