PI0001107 (gene) Melon (PI 482460) v1

Overview


Name	PI0001107
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	DNA-directed RNA polymerase II subunit RPB1-like protein
Location	chr08: 19554520 .. 19555976 (-)
RNA-Seq Expression	PI0001107
Synteny	PI0001107

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATGGGTAGGCATCATTCAGTCATTTAATTGAAAGGATGGAAAACCCTTTTCTTCTTTTTGTAAGGTTCATTCTTCTTCAAGATTTTGGACAGTGGGGTTCCGGACACCTTTTGATTTGATTAATTTCACTTCAATGAAATCACAAGACTTTCTATTAATATATCATTTTTATATATAATAATTAGTAATATATACAACATTATACATTATATTATATGTATACTGTTTGTAAGCGCTTATATATATATTAATAGAATAAATTCCACTATCCCAAATAAGGACACTAAAAAGTGCACACACCCATTAACAAAAGATCCAGAGTAAAAGAAGTCCATTCGCATTGAGGAAGGGTAGCCTTTGTAGTTTTTTTTAAATAAATTAAAAAAAAAAAAAAAAGCAAAAGGACAATTTTTCTACAAACTGAGAGTGTAAAATAGTCTAAACCCAAATGAACGGCACAAAATTAATAGAGAGGAAAGATAGTGGGAATGTTGTTGGGAGTGGAAGAGGGTGCATGTGAAATAGTGGAGGAAAGGACACTGCTTTATAACATATATAAAAAAAAATACAATAATATTATTACATTTACATTTTTTAAATATATAGTTTTTAGGTTGATTAATTAAAAAAAAAAAAAGGCAGAGTATAGCCCTAGAGCTATTCCAAAGGTTAATAAAAGAGAGAGAAAAACCAAACAAAGATCTTAAAATCTGAAAGAGAGGGTCCTAAACCTTTGGAAGTATCTCTACAAAGGTGAAAGACCCCTATTATAACCTACCCTAAACCCTAACATAATATATATTTTTTTGTAAAACATTACATAATTAATTCAAAAAGTGAAGCATATGGGAGAATATCGACAATTAAACAATACCTAAATACTAAAGTGCTCCATATTTATTATTATTTTAAGGTCTCTTATATAGTTGTTTATAGGCCATCCATATTACTATTTCTCCTATTTATTTATTTATTTATTTTATTTATTATACAACAAACCTATATATATAGAAGGGTTTAGGTTCAAAGCTTATTCAATACTACACTCAACTTAGAGATCTCTCTCCTTCCAACTTCAAACAAAGAAACAAAGAAAAATCTTCTCTTTTCTTTCTCTTTTTCTTTTTTCTTTTTTTTTTTTATCTCTGAATATATATATAAATAAAAATGGTGAAGAGAAATAGTAGGGTTTGTGGGGTTTGTATTATTATTGTTTTGGTTTTATGTTTAAGCCACGAGAGGGTTTACGTAGAATGCCGGCATCTCAAGTCGTCAAGATCATGCAAGAAATGCTCCAAATTAATCGGTACTCCGCCACCGCCGCCACCGGCTCATCTGAAGTCTGCCGGAAATCCTCAACAATTTACCACGATCAAAGCAGAATTACCTCAAGATTTTCGTCCTACATCGCCTGGCCATAGTCCTGGTGTTGGCCACCATATCAACAATTGA

mRNA sequence

ATGAAATGGGTAGGCATCATTCACCACGAGAGGGTTTACGTAGAATGCCGGCATCTCAAGTCGTCAAGATCATGCAAGAAATGCTCCAAATTAATCGGTACTCCGCCACCGCCGCCACCGGCTCATCTGAAGTCTGCCGGAAATCCTCAACAATTTACCACGATCAAAGCAGAATTACCTCAAGATTTTCGTCCTACATCGCCTGGCCATAGTCCTGGTGTTGGCCACCATATCAACAATTGA

Coding sequence (CDS)

ATGAAATGGGTAGGCATCATTCACCACGAGAGGGTTTACGTAGAATGCCGGCATCTCAAGTCGTCAAGATCATGCAAGAAATGCTCCAAATTAATCGGTACTCCGCCACCGCCGCCACCGGCTCATCTGAAGTCTGCCGGAAATCCTCAACAATTTACCACGATCAAAGCAGAATTACCTCAAGATTTTCGTCCTACATCGCCTGGCCATAGTCCTGGTGTTGGCCACCATATCAACAATTGA

Protein sequence

MKWVGIIHHERVYVECRHLKSSRSCKKCSKLIGTPPPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN

Homology

[Close]

BLAST of PI0001107 vs. ExPASy Swiss-Prot
Match: Q058G9 (Precursor of CEP5 OS=Arabidopsis thaliana OX=3702 GN=CEP5 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.6e-04
Identity = 21/47 (44.68%), Postives = 29/47 (61.70%), Query Frame = 0


Query: 34  TPPPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN 81
           +PPPPPP   +S G             +DFRPT+PGHSPG+GH +++
Sbjct: 68  SPPPPPPPPSQSGGKD----------AEDFRPTTPGHSPGIGHSLSH 104

[Close]

BLAST of PI0001107 vs. ExPASy TrEMBL
Match: A0A0A0KGB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490770 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.3e-34
Identity = 70/77 (90.91%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 4  VGIIHHERVYVECRHLKSSRSCKKCSKLIGTPPPPPPAHLKSAGNPQQFTTIKAELPQDF 63
          VG++ +E VYVECRHLKSSRSCKKCSK IGT PPPPPAHLKSAGNPQQFTTIKAELPQDF
Sbjct: 2  VGLVGYEGVYVECRHLKSSRSCKKCSKSIGTSPPPPPAHLKSAGNPQQFTTIKAELPQDF 61

Query: 64 RPTSPGHSPGVGHHINN 81
          RPTSPGHSPGVGHHINN
Sbjct: 62 RPTSPGHSPGVGHHINN 78

[Close]

BLAST of PI0001107 vs. ExPASy TrEMBL
Match: A0A2K1ZP13 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G041400 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-06
Identity = 38/77 (49.35%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 6  IIHHERVYVECRHLKSSRSCKKCSKLIGTPP--PPPPAHLKSAGNPQQFTTIKAELPQDF 65
          I+ HE V+VE R LKS   CKKCS         P    H  +AG  Q   T K +   DF
Sbjct: 18 ILCHEVVHVEGRPLKSVELCKKCSTNNDNSQNVPENGNHGLAAGQEQ---TSKVKYVDDF 77

Query: 66 RPTSPGHSPGVGHHINN 81
          RPT PGHSPGVGH +NN
Sbjct: 78 RPTEPGHSPGVGHSVNN 91

[Close]

BLAST of PI0001107 vs. ExPASy TrEMBL
Match: W9R6N3 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_008270 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.8e-06
Identity = 36/75 (48.00%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 6  IIHHERVYVECRHLKSSRSCKKCSKLIGTPPPPPPAHLKSAGNPQQFTTIKAELPQDFRP 65
          ++ HE + VE RHLKS+R  ++CSK           H   A +  +  T KAE   DFRP
Sbjct: 1  MVCHEVINVEGRHLKSTR-FRRCSK------SGDQQHSTYAYSRPEVQTSKAEHVDDFRP 60

Query: 66 TSPGHSPGVGHHINN 81
          T+PGHSPGVGH INN
Sbjct: 61 TAPGHSPGVGHSINN 68

[Close]

BLAST of PI0001107 vs. ExPASy TrEMBL
Match: A0A4P1RI20 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_22767 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.0e-06
Identity = 36/82 (43.90%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 6  IIHHERVYVECRHLKSSRSCKKCS----KLIGTPPPPPPAHLKSAGN---PQQFTTIKAE 65
          I+  + +YV+ RHL+S R C+KCS    KLIG        H  +A +    Q+    +  
Sbjct: 19 ILQQQDLYVQGRHLRSHRLCRKCSKTHGKLIG-----GDVHGSNANDHVMHQESNRREEY 78

Query: 66 LPQDFRPTSPGHSPGVGHHINN 81
             DFRPT+PGHSPGVGH INN
Sbjct: 79 EVDDFRPTTPGHSPGVGHSINN 95

[Close]

BLAST of PI0001107 vs. ExPASy TrEMBL
Match: A0A0S3R503 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G344400 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.4e-06
Identity = 34/82 (41.46%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 6  IIHHERVYVECRHLKSSRSCKKCSKLIGTPPPPPPAHLKSAGNPQQFTTIKAELPQ---- 65
          I+HH+ V+VE RHL+S   C++CSK         P +   +G+ +    +  E  +    
Sbjct: 18 ILHHQSVFVEGRHLRSP-LCEECSK---------PQNHTMSGDGKSDDVVHQEGSRRVEY 77

Query: 66 ---DFRPTSPGHSPGVGHHINN 81
             DFRPT+PGHSPGVGH INN
Sbjct: 78 EVDDFRPTTPGHSPGVGHSINN 89

[Close]

BLAST of PI0001107 vs. NCBI nr
Match: KAE8647497.1 (hypothetical protein Csa_004238, partial [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 2.2e-32
Identity = 68/74 (91.89%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 7  IHHERVYVECRHLKSSRSCKKCSKLIGTPPPPPPAHLKSAGNPQQFTTIKAELPQDFRPT 66
          + +E VYVECRHLKSSRSCKKCSK IGT PPPPPAHLKSAGNPQQFTTIKAELPQDFRPT
Sbjct: 26 LSYEGVYVECRHLKSSRSCKKCSKSIGTSPPPPPAHLKSAGNPQQFTTIKAELPQDFRPT 85

Query: 67 SPGHSPGVGHHINN 81
          SPGHSPGVGHHINN
Sbjct: 86 SPGHSPGVGHHINN 99

[Close]

BLAST of PI0001107 vs. NCBI nr
Match: KAG6595044.1 (hypothetical protein SDJN03_11597, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.9 bits (250), Expect = 5.2e-18
Identity = 52/80 (65.00%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 7  IHHERVYVECRHLKSSRSCKKCSKLIGTP------PPPPPAHLKSAGNPQQFTTIKAELP 66
          + HE VYVECRHLKSSR CKKC+K I  P          P  +  AGN Q+F T KAE P
Sbjct: 21 LSHEVVYVECRHLKSSR-CKKCTKFINPPAVNLGGKKADPGDVGLAGNRQEFKTSKAEQP 80

Query: 67 QDFRPTSPGHSPGVGHHINN 81
          QDFRPTSPGHSPGVGHHINN
Sbjct: 81 QDFRPTSPGHSPGVGHHINN 99

[Close]

BLAST of PI0001107 vs. NCBI nr
Match: PNT27018.1 (hypothetical protein POPTR_007G041400 [Populus trichocarpa])

HSP 1 Score: 61.6 bits (148), Expect = 3.5e-06
Identity = 38/77 (49.35%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 6  IIHHERVYVECRHLKSSRSCKKCSKLIGTPP--PPPPAHLKSAGNPQQFTTIKAELPQDF 65
          I+ HE V+VE R LKS   CKKCS         P    H  +AG  Q   T K +   DF
Sbjct: 18 ILCHEVVHVEGRPLKSVELCKKCSTNNDNSQNVPENGNHGLAAGQEQ---TSKVKYVDDF 77

Query: 66 RPTSPGHSPGVGHHINN 81
          RPT PGHSPGVGH +NN
Sbjct: 78 RPTEPGHSPGVGHSVNN 91

[Close]

BLAST of PI0001107 vs. NCBI nr
Match: EXB55919.1 (hypothetical protein L484_008270 [Morus notabilis])

HSP 1 Score: 60.5 bits (145), Expect = 7.8e-06
Identity = 36/75 (48.00%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 6  IIHHERVYVECRHLKSSRSCKKCSKLIGTPPPPPPAHLKSAGNPQQFTTIKAELPQDFRP 65
          ++ HE + VE RHLKS+R  ++CSK           H   A +  +  T KAE   DFRP
Sbjct: 1  MVCHEVINVEGRHLKSTR-FRRCSK------SGDQQHSTYAYSRPEVQTSKAEHVDDFRP 60

Query: 66 TSPGHSPGVGHHINN 81
          T+PGHSPGVGH INN
Sbjct: 61 TAPGHSPGVGHSINN 68

[Close]

BLAST of PI0001107 vs. NCBI nr
Match: KAF3961816.1 (hypothetical protein CMV_013603 [Castanea mollissima])

HSP 1 Score: 60.5 bits (145), Expect = 7.8e-06
Identity = 35/76 (46.05%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 6  IIHHERVYVECRHLKSSRS-CKKCSKLIGTPPPPPPAHLKSAGNPQQFTTIKAELPQDFR 65
          ++HH  + VE RHLKS ++ C KCS  + T        L +    Q   T K E   DFR
Sbjct: 17 VLHHGILDVEGRHLKSDQAVCNKCSMHVNTLTAAKVGDLTN----QSEQTSKMEHVDDFR 76

Query: 66 PTSPGHSPGVGHHINN 81
          PT PGHSPGVGH IN+
Sbjct: 77 PTEPGHSPGVGHSINS 88

[Close]

BLAST of PI0001107 vs. TAIR 10
Match: AT5G66815.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 1.9e-05
Identity = 21/47 (44.68%), Postives = 29/47 (61.70%), Query Frame = 0


Query: 34  TPPPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN 81
           +PPPPPP   +S G             +DFRPT+PGHSPG+GH +++
Sbjct: 68  SPPPPPPPPSQSGGKD----------AEDFRPTTPGHSPGIGHSLSH 104

The following BLAST results are available for this feature:

BLAST of PI0001107 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q058G9	2.6e-04	44.68	Precursor of CEP5 OS=Arabidopsis thaliana OX=3702 GN=CEP5 PE=1 SV=1	[more]

BLAST of PI0001107 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGB6	3.3e-34	90.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490770 PE=4 SV=1	[more]
A0A2K1ZP13	1.7e-06	49.35	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G041400 PE=3 ...	[more]
W9R6N3	3.8e-06	48.00	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_008270 PE=3 SV=1	[more]
A0A4P1RI20	5.0e-06	43.90	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_22767 PE=3 S...	[more]
A0A0S3R503	8.4e-06	41.46	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G...	[more]

BLAST of PI0001107 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647497.1	2.2e-32	91.89	hypothetical protein Csa_004238, partial [Cucumis sativus]	[more]
KAG6595044.1	5.2e-18	65.00	hypothetical protein SDJN03_11597, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PNT27018.1	3.5e-06	49.35	hypothetical protein POPTR_007G041400 [Populus trichocarpa]	[more]
EXB55919.1	7.8e-06	48.00	hypothetical protein L484_008270 [Morus notabilis]	[more]
KAF3961816.1	7.8e-06	46.05	hypothetical protein CMV_013603 [Castanea mollissima]	[more]

BLAST of PI0001107 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66815.1	1.9e-05	44.68	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0001107.1	PI0001107.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050789	regulation of biological process