PI0000999 (gene) Melon (PI 482460) v1

Overview


Name	PI0000999
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr09: 16820082 .. 16821386 (-)
RNA-Seq Expression	PI0000999
Synteny	PI0000999

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATTACTGGATCACCTATTATGCTAGTCTTACATCCCAACCCATCGTTGTTGAGAAAACTCGATCGACTGAAGAGTTCACGATATCATATTGAGATGGATCGGAGGGAACCGAGTGCTGAGTACAATGTGGATTTTGTGGTCAAAGACGTCAAAATCGAAGGAAATGTCCTTTGCTTCAGGGAAGGGCATCAGATAATTAAAATTTTTTGCCCTAAATGATTTTTCTTTATGTGTACCCTTACGATAAATTTATTTAATATAATTCATTATGTAGTATTCTTTTGGTTCGAATCATATTATTGTACGTTGTAAACGATCATCTACTATCTGGACGAGCACACGGTTCATGTTATGCTATTTTATTTTAATTTAGATCAAACAGTAGTTTTAATACTAAATGAGTAATATAATTAATTCAAAATCTAAAATATTAGTTTATTAATCAGATGGAGAGACCAGTTTTGTGTAACCAGATCAGCTACTCATGTAGTTAGTCAGTATAGGTACATGTTTGACCTTCTTCAACGTGATCAAGTACGTCAATACTAAAACTTAAATTTTTTATACATTAGTATACATATATTTATTTATTTTTAATGTAATGTGTGATTTTTTAGATTATTTAGGAGCCTTACAAAAATATAATTGATAATTTACCCAATTTTTGTAAGAACGGTCAAGATATATGGCGGACCATCAGTCCTCTCATATATATGTTTTAATATTGGTGAGTCACATTATCCTAATAAGGTGATCAAACAATTCGGTTTTAAACAAGATATCCCATCAAAATGCAATAACACAACATTGACTTGAGAGCTACGGATTAGTAAAACAAGATTGCACATTTGGTAGTGCGATGGTAATCTCTTAGAAGATTTGTTGTGATGGGAGCTTCGATTTAGAAATTTGATAGGGATGTGACTCAAGAATACATCCATTGGTATAATAATATTACGAGGCTCCACATCACTCGACCAGAAGCAGCTGTGGGTCATCTGGTACATATTTAAATATTGTATAATTACTTTAAATTATTTACTCAATTAAATATTGTCTAATTTCTTTTACAATTTACAGAGATCGAATAATAGAAGACTTCGTGATGTTGCAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACGTGGAGGAGATATATTATATGTACGATGTACCTATTGTACCTCCACCAGTTCATAGAGAACATGTTCAAGTGGAAGAAGTTGAACTCGATGAAGTTTACCATAATGTAGAAGAAGTGCCTCCAGTGACACAGACATAG

mRNA sequence

ATGAAAATTACTGGATCACCTATTATGCTAAGATCGAATAATAGAAGACTTCGTGATGTTGCAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACGTGGAGGAGATATATTATATGTACGATGTACCTATTGTACCTCCACCAGTTCATAGAGAACATGTTCAAGTGGAAGAAGTTGAACTCGATGAAGTTTACCATAATGTAGAAGAAGTGCCTCCAGTGACACAGACATAG

Coding sequence (CDS)

ATGAAAATTACTGGATCACCTATTATGCTAAGATCGAATAATAGAAGACTTCGTGATGTTGCAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACGTGGAGGAGATATATTATATGTACGATGTACCTATTGTACCTCCACCAGTTCATAGAGAACATGTTCAAGTGGAAGAAGTTGAACTCGATGAAGTTTACCATAATGTAGAAGAAGTGCCTCCAGTGACACAGACATAG

Protein sequence

MKITGSPIMLRSNNRRLRDVADDPQQVLDICNNNERYVEEIYYMYDVPIVPPPVHREHVQVEEVELDEVYHNVEEVPPVTQT

Homology

[Close]

BLAST of PI0000999 vs. ExPASy TrEMBL
Match: A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.7e-25
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 10  LRSNNRRLRDVADDPQQVLDICNNNERYVEEIYYMYDVPIVPPPVHREHVQVEEVELDEV 69
           LRSNN RLRDV +DPQQVLDICNNNERY+E+I+ +YD+PIVPPPVHRE  +VEE ELDEV
Sbjct: 316 LRSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEV 375

Query: 70  YHNVEEVPPVTQT 83
           YHNVEEVPP TQT
Sbjct: 376 YHNVEEVPPTTQT 388

[Close]

BLAST of PI0000999 vs. ExPASy TrEMBL
Match: A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.4e-25
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 10  LRSNNRRLRDVADDPQQVLDICNNNERYVEEIYYMYDVPIVPPPVHREHVQVEEVELDEV 69
           LRSNN RLRDVADDPQQVL+ICNNN+RY+EEI+ MYD+ IVPPPVHR  V+VEE ELDEV
Sbjct: 148 LRSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEV 207

Query: 70  YHNVEEVPPVTQT 83
           YHNVEEVPP TQT
Sbjct: 208 YHNVEEVPPTTQT 220

[Close]

BLAST of PI0000999 vs. ExPASy TrEMBL
Match: A0A5D3CH23 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00320 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.4e-25
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 10  LRSNNRRLRDVADDPQQVLDICNNNERYVEEIYYMYDVPIVPPPVHREHVQVEEVELDEV 69
           LRSNN RLRDVADDPQQVL+ICNNN+RY+EEI+ MYD+ IVPPPVHR  V+VEE ELDEV
Sbjct: 139 LRSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEV 198

Query: 70  YHNVEEVPPVTQT 83
           YHNVEEVPP TQT
Sbjct: 199 YHNVEEVPPTTQT 211

[Close]

BLAST of PI0000999 vs. ExPASy TrEMBL
Match: A0A5A7V745 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G001310 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.3e-25
Identity = 61/80 (76.25%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 3   ITGSPIMLRSNNRRLRDVADDPQQVLDICNNNERYVEEIYYMYDVPIVPPPVHREHVQVE 62
           + G  +  RSNN RLRDVA+DPQQVLDICNNNERY+EEI+ MYD+PIVPP  HR  V+VE
Sbjct: 338 LPGRALGSRSNNARLRDVANDPQQVLDICNNNERYMEEIHNMYDLPIVPPLAHRGCVRVE 397

Query: 63  EVELDEVYHNVEEVPPVTQT 83
           EVELDEVYHNVEEVPP+TQT
Sbjct: 398 EVELDEVYHNVEEVPPMTQT 417

[Close]

BLAST of PI0000999 vs. ExPASy TrEMBL
Match: A0A5D3BTN9 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00320 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.1e-24
Identity = 61/80 (76.25%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 3   ITGSPIMLRSNNRRLRDVADDPQQVLDICNNNERYVEEIYYMYDVPIVPPPVHREHVQVE 62
           + G  +  RSNN RLRDVA+DPQQVLDICNNNERY+EEI+ MYD+PIVPP  HR  V+VE
Sbjct: 338 LPGRALGSRSNNARLRDVANDPQQVLDICNNNERYMEEIHNMYDLPIVPPLAHRGCVRVE 397

Query: 63  EVELDEVYHNVEEVPPVTQT 83
           EVELDEVYHNVEEVPP TQT
Sbjct: 398 EVELDEVYHNVEEVPPTTQT 417

[Close]

BLAST of PI0000999 vs. NCBI nr
Match: TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 123.6 bits (309), Expect = 7.7e-25
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 10  LRSNNRRLRDVADDPQQVLDICNNNERYVEEIYYMYDVPIVPPPVHREHVQVEEVELDEV 69
           LRSNN RLRDV +DPQQVLDICNNNERY+E+I+ +YD+PIVPPPVHRE  +VEE ELDEV
Sbjct: 316 LRSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEV 375

Query: 70  YHNVEEVPPVTQT 83
           YHNVEEVPP TQT
Sbjct: 376 YHNVEEVPPTTQT 388

[Close]

BLAST of PI0000999 vs. NCBI nr
Match: KAA0038951.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 122.9 bits (307), Expect = 1.3e-24
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 10  LRSNNRRLRDVADDPQQVLDICNNNERYVEEIYYMYDVPIVPPPVHREHVQVEEVELDEV 69
           LRSNN RLRDVADDPQQVL+ICNNN+RY+EEI+ MYD+ IVPPPVHR  V+VEE ELDEV
Sbjct: 148 LRSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEV 207

Query: 70  YHNVEEVPPVTQT 83
           YHNVEEVPP TQT
Sbjct: 208 YHNVEEVPPTTQT 220

[Close]

BLAST of PI0000999 vs. NCBI nr
Match: TYK11193.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 122.9 bits (307), Expect = 1.3e-24
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 10  LRSNNRRLRDVADDPQQVLDICNNNERYVEEIYYMYDVPIVPPPVHREHVQVEEVELDEV 69
           LRSNN RLRDVADDPQQVL+ICNNN+RY+EEI+ MYD+ IVPPPVHR  V+VEE ELDEV
Sbjct: 139 LRSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEV 198

Query: 70  YHNVEEVPPVTQT 83
           YHNVEEVPP TQT
Sbjct: 199 YHNVEEVPPTTQT 211

[Close]

BLAST of PI0000999 vs. NCBI nr
Match: KAA0064192.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 1.7e-24
Identity = 61/80 (76.25%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 3   ITGSPIMLRSNNRRLRDVADDPQQVLDICNNNERYVEEIYYMYDVPIVPPPVHREHVQVE 62
           + G  +  RSNN RLRDVA+DPQQVLDICNNNERY+EEI+ MYD+PIVPP  HR  V+VE
Sbjct: 338 LPGRALGSRSNNARLRDVANDPQQVLDICNNNERYMEEIHNMYDLPIVPPLAHRGCVRVE 397

Query: 63  EVELDEVYHNVEEVPPVTQT 83
           EVELDEVYHNVEEVPP+TQT
Sbjct: 398 EVELDEVYHNVEEVPPMTQT 417

[Close]

BLAST of PI0000999 vs. NCBI nr
Match: TYK02837.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 2.2e-24
Identity = 61/80 (76.25%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 3   ITGSPIMLRSNNRRLRDVADDPQQVLDICNNNERYVEEIYYMYDVPIVPPPVHREHVQVE 62
           + G  +  RSNN RLRDVA+DPQQVLDICNNNERY+EEI+ MYD+PIVPP  HR  V+VE
Sbjct: 338 LPGRALGSRSNNARLRDVANDPQQVLDICNNNERYMEEIHNMYDLPIVPPLAHRGCVRVE 397

Query: 63  EVELDEVYHNVEEVPPVTQT 83
           EVELDEVYHNVEEVPP TQT
Sbjct: 398 EVELDEVYHNVEEVPPTTQT 417

The following BLAST results are available for this feature:

BLAST of PI0000999 vs.


Match Name	E-value	Identity	Description

BLAST of PI0000999 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DJV7	3.7e-25	80.82	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7TBF8	6.4e-25	82.19	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3CH23	6.4e-25	82.19	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5A7V745	8.3e-25	76.25	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5D3BTN9	1.1e-24	76.25	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]

BLAST of PI0000999 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23842.1	7.7e-25	80.82	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0038951.1	1.3e-24	82.19	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK11193.1	1.3e-24	82.19	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0064192.1	1.7e-24	76.25	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
TYK02837.1	2.2e-24	76.25	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]

BLAST of PI0000999 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0000999.1	PI0000999.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity