Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCTCTACATCACTCGATCAAAAGCAGCTGTGGGTCATCTGGTACATATTTAAATATTGAATAATTTTTTTAAATTCTTTACTCAATTAACTATTCTCTTATTTTTTTTTTTCAATTCACAGAGATCGAACAACAGAAGACTTCGTGATGTTGCAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGGACATACATTATATGTACGATGTACATATTGTACCTCCACCAGTTAACAGGGAACGTGTTCGAGTGGAAAAACCTGAACTCGATGAAGTTTACCATAACGTAGATGAAGTACCTCCAATGACACAGACACAGAGCCAAACTGGTTATGGTAGCCCGATGATGATGATCCCAACATTTGGAGTAGGATATTGTGATTCTAAGGTTGGTACAAGATATTATGACTCAGGGGTCGGTCCATCGTCTTCATACATGGATGCCAGGCCATCAACTTCTTACATGCATGGATATGGACACGGACGCGATCGCGGAGAACATAATGCTGTACTATGA
mRNA sequence
ATGAGGCTCTACATCACTCGATCAAAAGCAGCTGTGGGTCATCTGAGATCGAACAACAGAAGACTTCGTGATGTTGCAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGGACATACATTATATGTACGATGTACATATTGTACCTCCACCAGTTAACAGGGAACGTGTTCGAGTGGAAAAACCTGAACTCGATGAAGTTTACCATAACGTAGATGAAGTACCTCCAATGACACAGACACAGAGCCAAACTGGTTATGGTAGCCCGATGATGATGATCCCAACATTTGGAGTAGGATATTGTGATTCTAAGGTTGGTACAAGATATTATGACTCAGGGGTCGGTCCATCGTCTTCATACATGGATGCCAGGCCATCAACTTCTTACATGCATGGATATGGACACGGACGCGATCGCGGAGAACATAATGCTGTACTATGA
Coding sequence (CDS)
ATGAGGCTCTACATCACTCGATCAAAAGCAGCTGTGGGTCATCTGAGATCGAACAACAGAAGACTTCGTGATGTTGCAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGGACATACATTATATGTACGATGTACATATTGTACCTCCACCAGTTAACAGGGAACGTGTTCGAGTGGAAAAACCTGAACTCGATGAAGTTTACCATAACGTAGATGAAGTACCTCCAATGACACAGACACAGAGCCAAACTGGTTATGGTAGCCCGATGATGATGATCCCAACATTTGGAGTAGGATATTGTGATTCTAAGGTTGGTACAAGATATTATGACTCAGGGGTCGGTCCATCGTCTTCATACATGGATGCCAGGCCATCAACTTCTTACATGCATGGATATGGACACGGACGCGATCGCGGAGAACATAATGCTGTACTATGA
Protein sequence
MRLYITRSKAAVGHLRSNNRRLRDVADDPQQVLDICNNNERYMEDIHYMYDVHIVPPPVNRERVRVEKPELDEVYHNVDEVPPMTQTQSQTGYGSPMMMIPTFGVGYCDSKVGTRYYDSGVGPSSSYMDARPSTSYMHGYGHGRDRGEHNAVL
Homology
BLAST of PI0000968 vs. ExPASy TrEMBL
Match:
A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)
HSP 1 Score: 236.5 bits (602), Expect = 7.4e-59
Identity = 117/152 (76.97%), Postives = 126/152 (82.89%), Query Frame = 0
Query: 2 RLYITRSKAAVGHLRSNNRRLRDVADDPQQVLDICNNNERYMEDIHYMYDVHIVPPPVNR 61
RLYITR A VGHLRSNN RLRDV +DPQQVLDICNNNERYME IH +YD+ IVPPPV+R
Sbjct: 303 RLYITRPGAIVGHLRSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYDLPIVPPPVHR 362
Query: 62 ERVRVEKPELDEVYHNVDEVPPMTQTQSQTGYGSPMMMIPTFGVGYCDSKVGTRYYDSGV 121
ER RVE+ ELDEVYHNV+EVPP TQTQSQTGYGSPM M+PTFG GYCDS+V YYD+ V
Sbjct: 363 ERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVV 422
Query: 122 GPSSSYMDARPSTSYMHGYGHGRDRGEHNAVL 154
GP SSYMD PSTSYM YGHGR GEHN L
Sbjct: 423 GPLSSYMDVGPSTSYM--YGHGRGYGEHNEYL 452
BLAST of PI0000968 vs. ExPASy TrEMBL
Match:
A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)
HSP 1 Score: 236.5 bits (602), Expect = 7.4e-59
Identity = 116/152 (76.32%), Postives = 128/152 (84.21%), Query Frame = 0
Query: 2 RLYITRSKAAVGHLRSNNRRLRDVADDPQQVLDICNNNERYMEDIHYMYDVHIVPPPVNR 61
RLYITR +AAVGHLRSNN RLRDVADDPQQVL+ICNNN+RYME+IH MYD+ IVPPPV+R
Sbjct: 135 RLYITRPRAAVGHLRSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHR 194
Query: 62 ERVRVEKPELDEVYHNVDEVPPMTQTQSQTGYGSPMMMIPTFGVGYCDSKVGTRYYDSGV 121
RVRVE+ ELDEVYHNV+EVPP TQTQSQTGYGSPM M+PTFG GY DS+VGT YYD+G+
Sbjct: 195 GRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVGTGYYDAGI 254
Query: 122 GPSSSYMDARPSTSYMHGYGHGRDRGEHNAVL 154
PSS YMD PS YMH GH R GEHN L
Sbjct: 255 SPSSLYMDVGPSNFYMH--GHKRGYGEHNKYL 284
BLAST of PI0000968 vs. ExPASy TrEMBL
Match:
A0A5D3CH23 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00320 PE=4 SV=1)
HSP 1 Score: 235.0 bits (598), Expect = 2.1e-58
Identity = 116/152 (76.32%), Postives = 127/152 (83.55%), Query Frame = 0
Query: 2 RLYITRSKAAVGHLRSNNRRLRDVADDPQQVLDICNNNERYMEDIHYMYDVHIVPPPVNR 61
RLYITR AAVGHLRSNN RLRDVADDPQQVL+ICNNN+RYME+IH MYD+ IVPPPV+R
Sbjct: 126 RLYITRPGAAVGHLRSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHR 185
Query: 62 ERVRVEKPELDEVYHNVDEVPPMTQTQSQTGYGSPMMMIPTFGVGYCDSKVGTRYYDSGV 121
RVRVE+ ELDEVYHNV+EVPP TQTQSQTGYGSPM M+PTFG GY DS+VGT YYD+G+
Sbjct: 186 GRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVGTGYYDAGI 245
Query: 122 GPSSSYMDARPSTSYMHGYGHGRDRGEHNAVL 154
PSS YMD PS YMH GH R GEHN L
Sbjct: 246 SPSSLYMDVGPSNFYMH--GHKRGYGEHNKYL 275
BLAST of PI0000968 vs. ExPASy TrEMBL
Match:
A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)
HSP 1 Score: 220.3 bits (560), Expect = 5.5e-54
Identity = 113/152 (74.34%), Postives = 123/152 (80.92%), Query Frame = 0
Query: 2 RLYITRSKAAVGHLRSNNRRLRDVADDPQQVLDICNNNERYMEDIHYMYDVHIVPPPVNR 61
RLYITR AAVG RSNN RLRDVADD QQ LDICNNNERYME+IH MYD+ IVPPPV+R
Sbjct: 27 RLYITRPGAAVG--RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHR 86
Query: 62 ERVRVEKPELDEVYHNVDEVPPMTQTQSQTGYGSPMMMIPTFGVGYCDSKVGTRYYDSGV 121
VRVE+ ELD+VYHNV+EVP TQTQSQTGYGSPM M+PTF GYCD +VG YYD+GV
Sbjct: 87 GCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGV 146
Query: 122 GPSSSYMDARPSTSYMHGYGHGRDRGEHNAVL 154
GPSSSY+D PSTSYMH GH R GEHN L
Sbjct: 147 GPSSSYVDVSPSTSYMH--GHSRGYGEHNEYL 174
BLAST of PI0000968 vs. ExPASy TrEMBL
Match:
A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)
HSP 1 Score: 214.2 bits (544), Expect = 3.9e-52
Identity = 107/152 (70.39%), Postives = 124/152 (81.58%), Query Frame = 0
Query: 2 RLYITRSKAAVGHLRSNNRRLRDVADDPQQVLDICNNNERYMEDIHYMYDVHIVPPPVNR 61
RLYIT+ +G RSNN RLRDVADD QQVLDICNNN+R+ME+IH MY + IVPP ++R
Sbjct: 26 RLYITQ----LGATRSNNARLRDVADDSQQVLDICNNNKRHMEEIHNMYHLPIVPPQIHR 85
Query: 62 ERVRVEKPELDEVYHNVDEVPPMTQTQSQTGYGSPMMMIPTFGVGYCDSKVGTRYYDSGV 121
RV+VE+ ELDEVYHNV+E+ P TQ Q+QTGYGSPM+M+PTFGVGYCD +V T YYDSGV
Sbjct: 86 GRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYCDFEVNTEYYDSGV 145
Query: 122 GPSSSYMDARPSTSYMHGYGHGRDRGEHNAVL 154
GPSSSYMD PSTSYMHG+ H D GEHN L
Sbjct: 146 GPSSSYMDVGPSTSYMHGHRH--DYGEHNEYL 171
BLAST of PI0000968 vs. NCBI nr
Match:
KAA0038951.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 236.5 bits (602), Expect = 1.5e-58
Identity = 116/152 (76.32%), Postives = 128/152 (84.21%), Query Frame = 0
Query: 2 RLYITRSKAAVGHLRSNNRRLRDVADDPQQVLDICNNNERYMEDIHYMYDVHIVPPPVNR 61
RLYITR +AAVGHLRSNN RLRDVADDPQQVL+ICNNN+RYME+IH MYD+ IVPPPV+R
Sbjct: 135 RLYITRPRAAVGHLRSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHR 194
Query: 62 ERVRVEKPELDEVYHNVDEVPPMTQTQSQTGYGSPMMMIPTFGVGYCDSKVGTRYYDSGV 121
RVRVE+ ELDEVYHNV+EVPP TQTQSQTGYGSPM M+PTFG GY DS+VGT YYD+G+
Sbjct: 195 GRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVGTGYYDAGI 254
Query: 122 GPSSSYMDARPSTSYMHGYGHGRDRGEHNAVL 154
PSS YMD PS YMH GH R GEHN L
Sbjct: 255 SPSSLYMDVGPSNFYMH--GHKRGYGEHNKYL 284
BLAST of PI0000968 vs. NCBI nr
Match:
TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 236.5 bits (602), Expect = 1.5e-58
Identity = 117/152 (76.97%), Postives = 126/152 (82.89%), Query Frame = 0
Query: 2 RLYITRSKAAVGHLRSNNRRLRDVADDPQQVLDICNNNERYMEDIHYMYDVHIVPPPVNR 61
RLYITR A VGHLRSNN RLRDV +DPQQVLDICNNNERYME IH +YD+ IVPPPV+R
Sbjct: 303 RLYITRPGAIVGHLRSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYDLPIVPPPVHR 362
Query: 62 ERVRVEKPELDEVYHNVDEVPPMTQTQSQTGYGSPMMMIPTFGVGYCDSKVGTRYYDSGV 121
ER RVE+ ELDEVYHNV+EVPP TQTQSQTGYGSPM M+PTFG GYCDS+V YYD+ V
Sbjct: 363 ERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVV 422
Query: 122 GPSSSYMDARPSTSYMHGYGHGRDRGEHNAVL 154
GP SSYMD PSTSYM YGHGR GEHN L
Sbjct: 423 GPLSSYMDVGPSTSYM--YGHGRGYGEHNEYL 452
BLAST of PI0000968 vs. NCBI nr
Match:
TYK11193.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 235.0 bits (598), Expect = 4.4e-58
Identity = 116/152 (76.32%), Postives = 127/152 (83.55%), Query Frame = 0
Query: 2 RLYITRSKAAVGHLRSNNRRLRDVADDPQQVLDICNNNERYMEDIHYMYDVHIVPPPVNR 61
RLYITR AAVGHLRSNN RLRDVADDPQQVL+ICNNN+RYME+IH MYD+ IVPPPV+R
Sbjct: 126 RLYITRPGAAVGHLRSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHR 185
Query: 62 ERVRVEKPELDEVYHNVDEVPPMTQTQSQTGYGSPMMMIPTFGVGYCDSKVGTRYYDSGV 121
RVRVE+ ELDEVYHNV+EVPP TQTQSQTGYGSPM M+PTFG GY DS+VGT YYD+G+
Sbjct: 186 GRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVGTGYYDAGI 245
Query: 122 GPSSSYMDARPSTSYMHGYGHGRDRGEHNAVL 154
PSS YMD PS YMH GH R GEHN L
Sbjct: 246 SPSSLYMDVGPSNFYMH--GHKRGYGEHNKYL 275
BLAST of PI0000968 vs. NCBI nr
Match:
KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 220.3 bits (560), Expect = 1.1e-53
Identity = 113/152 (74.34%), Postives = 123/152 (80.92%), Query Frame = 0
Query: 2 RLYITRSKAAVGHLRSNNRRLRDVADDPQQVLDICNNNERYMEDIHYMYDVHIVPPPVNR 61
RLYITR AAVG RSNN RLRDVADD QQ LDICNNNERYME+IH MYD+ IVPPPV+R
Sbjct: 27 RLYITRPGAAVG--RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHR 86
Query: 62 ERVRVEKPELDEVYHNVDEVPPMTQTQSQTGYGSPMMMIPTFGVGYCDSKVGTRYYDSGV 121
VRVE+ ELD+VYHNV+EVP TQTQSQTGYGSPM M+PTF GYCD +VG YYD+GV
Sbjct: 87 GCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGV 146
Query: 122 GPSSSYMDARPSTSYMHGYGHGRDRGEHNAVL 154
GPSSSY+D PSTSYMH GH R GEHN L
Sbjct: 147 GPSSSYVDVSPSTSYMH--GHSRGYGEHNEYL 174
BLAST of PI0000968 vs. NCBI nr
Match:
KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 214.2 bits (544), Expect = 8.1e-52
Identity = 107/152 (70.39%), Postives = 124/152 (81.58%), Query Frame = 0
Query: 2 RLYITRSKAAVGHLRSNNRRLRDVADDPQQVLDICNNNERYMEDIHYMYDVHIVPPPVNR 61
RLYIT+ +G RSNN RLRDVADD QQVLDICNNN+R+ME+IH MY + IVPP ++R
Sbjct: 26 RLYITQ----LGATRSNNARLRDVADDSQQVLDICNNNKRHMEEIHNMYHLPIVPPQIHR 85
Query: 62 ERVRVEKPELDEVYHNVDEVPPMTQTQSQTGYGSPMMMIPTFGVGYCDSKVGTRYYDSGV 121
RV+VE+ ELDEVYHNV+E+ P TQ Q+QTGYGSPM+M+PTFGVGYCD +V T YYDSGV
Sbjct: 86 GRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYCDFEVNTEYYDSGV 145
Query: 122 GPSSSYMDARPSTSYMHGYGHGRDRGEHNAVL 154
GPSSSYMD PSTSYMHG+ H D GEHN L
Sbjct: 146 GPSSSYMDVGPSTSYMHGHRH--DYGEHNEYL 171
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DJV7 | 7.4e-59 | 76.97 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| A0A5A7TBF8 | 7.4e-59 | 76.32 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5D3CH23 | 2.1e-58 | 76.32 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5A7V342 | 5.5e-54 | 74.34 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5A7SLF8 | 3.9e-52 | 70.39 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0038951.1 | 1.5e-58 | 76.32 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| TYK23842.1 | 1.5e-58 | 76.97 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| TYK11193.1 | 4.4e-58 | 76.32 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| KAA0062642.1 | 1.1e-53 | 74.34 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| KAA0025972.1 | 8.1e-52 | 70.39 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
