PI0000907 (gene) Melon (PI 482460) v1

Overview


Name	PI0000907
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ribosomal RNA large subunit methyltransferase H
Location	chr04: 30566395 .. 30568940 (-)
RNA-Seq Expression	PI0000907
Synteny	PI0000907

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTACTGCTCTCTCCACTGCCCTTTCCGCTTCTCCTTCAGGTATTTCTTCTTCTAGAATTCGACATAGGTTTTGTTCTTCCATGTTCTAGCCGGCAATTTGTAACGTTTCTCCGATTTCGAGTTTTCAGGTGGACGCTGCAAGTACACCGGTCAATCTGTGGTACTACATTTCTTGTTTCTTTCTTTAAAATTTAGTTTCAATTTCCGCATCTCCACTGTTTTGTTTTTGTGATTCTCTATTCTTTTTGCAATTCCAGTTTGTCAATTAACCTTATATTGGAGTTTGATTGGGGATTCGAATGGCTGGATTTTAATCTGAAAGTGGTTTTATGGACAATGGACAGAGAGCGGTGCCAATACGTGTTTTAACTGTGGGGAAGAAGAGGTCTCGTGGCGTACAGCTTCTTGTTGATGAGTATATTGATAAGCTCAAGAACTACTGCCATGTTGAAGATGTTCAACTGCGCTCAAATCCGAGGAATGCGAGGTATGGGATTTTATGGTTGATGTTAGTTTGTAAATTTTGTTTTGCTGAATGATGTTATCTTAATTGAATACTTTCATTCTGCTTATTGGTACTTGAATTTTAGGGATCCGAAAGCTCAGGTTGATGATGAAGACATGGCTGTCGTGAATCTTCTCAAGTCTGACGACTGGGTTTATCTCTTAACATTCTTTTTCGTCGGATCATTACATATTTTGTTTTTCTGGCTGTGCTCCTCTTACCACAAATTAGTTTAGAACTTCTCTTTATCAATTACATATTTCTTTTGTCTGCTAAAAACGTGAAAAAAGATTGTATTCTTGAATTTTTTACTCCAGAGAAAATGTGTCATAGTGCTTTTTTCTGGGAAGAAATATAGGTTGCAATATATTTTTTTTATATACAGTATGACCAATGTGGGTTGAGGGATTTGAACGTCCGATCTCAATAGGAGTACGATATGCTCATGTGTGTCAGATCAAAATGATCTGTAGAATGTTTTATAGTGCTGCTATTACTGCTTACTATCTCCATTATACATATGCACCTGCAGGTTGTGATGCTGGATGAGAATGGGAAAGAGATATCCTCCGAGCAGATGGCCGAGTTGGTGGCAGATGCAGGCAATACAGTGCGTACCATTTCCAATTCAAATCGAATTGGTTACTTCATTATTGTCTGTTAATCTCTACTTTTGACAGTAGTCGTGATACTTAAAATTTTCAAAGTTAGTGTCAAGGAGTTTAGTCTAGTCTGGAAATTGAAAGTTTTGATTATTCTCAAATTAACAAGCCCACATGTTCCACTTCCATTTCAGTCTAGATCTTAGCATGTAACAGTCTCTTTCTTTCTAATTTTATATGATGGAATTGCACAGATGGCTAGAAGTAGAACAATATGTGGATTGTTTTAAATTTTCTTAGCCTCATATAGGTTTCCAGTTGTCATTGTGCTCCAATTGTTTCTGGAAACAACTTTAATAGAGCTATCGGGGTATGTCGAGAATGGACATGGCCTTTTTTAGATGTTCTTAGATAAAGGTACTGTCTTCTAATCTTATGTTTCTTATTCTCTGCAGGGTGCTTCAAGATTATCATTTTGCATTGGTGGACCGTATGGCCATGGACAACAACTGCGACAACGAGCTAACTTATCGATCAAGCTTTCCTCCATGGTATTAAATCATCAAATTGCACTACTTGTGCTTATGGAACAACTTTACAGGTAACGTTTTTTTTCCTTCTAGTCCATAGTGCCTTTTGAATTTCAATAGTGCCTCTTGGGTGGAACTGATGTGTTGATGATAATGAACTTAAGATGCTGGACGTACAATTCTATTATCCCATCAAACTTCCTGTTTTTTGTTCACTACAGCCAAGATCTCTCTCCGTCCTGCTCGGCGCCTAGAATCCACTCAAACCTCATAGCTTATGGCTGCAAAATGTTTTGAAATTTCATTTCCGGACATTAAATTTGTAATTTAAGCAGCCATTTTGAAACTTTTGAAATCAAACCGCTACTTTCTTTCACACATTTACTTCAAAATCTAACACTAAACATCCAACTCACACTGCACCATCTTGCATTTTGAAGTTAATATACTTATTCTCAATGCATTTGTATTATTATTAGGTCATGGACTATTCTAAAAGGACAGAAGTACCATCATTAGCAGCAGCAGCAGCTCAAATGCCAGCTTAGCGGTATTTTGCCTTGATATGTTACATCTTTAGCTGTCTATTTCATATTCACAATAGATGGAAAAGTTTAAGTTTGTGTATAAATTATCTCTTATTGCCATTATTGTAGGAAAGTTTGTTGCTTATTTTGTCCAAAGCATTTCCCTCCTGATCTTTCGTGTACGAATATTAATTCGTCAACTACTCTTAAGTGTAAGTTCTAATGGGTCAAAAATTTTAACCTCGTCTTAAGGAAATTAATAGTTGTCTCAACCATTGTTGTATACCTATATTTGCTCCTGGATTCATGACGAAGGGAGCCTCAAGGTGGAGATTAACTATTTTCATCATTACACTTGATTTCTTCTCTTTTCTCTTT

mRNA sequence

ATGATTACTGCTCTCTCCACTGCCCTTTCCGCTTCTCCTTCAGGTGGACGCTGCAAGTACACCGGTCAATCTGTGAGAGCGGTGCCAATACGTGTTTTAACTGTGGGGAAGAAGAGGTCTCGTGGCGTACAGCTTCTTGTTGATGAGTATATTGATAAGCTCAAGAACTACTGCCATGTTGAAGATGTTCAACTGCGCTCAAATCCGAGGAATGCGAGGGATCCGAAAGCTCAGGTTGATGATGAAGACATGGCTGTCGTGAATCTTCTCAAGTCTGACGACTGGGTTGTGATGCTGGATGAGAATGGGAAAGAGATATCCTCCGAGCAGATGGCCGAGTTGGTGGCAGATGCAGGCAATACAGGTGCTTCAAGATTATCATTTTGCATTGGTGGACCGTATGGCCATGGACAACAACTGCGACAACGAGCTAACTTATCGATCAAGCTTTCCTCCATGGTATTAAATCATCAAATTGCACTACTTGTGCTTATGGAACAACTTTACAGGTCATGGACTATTCTAAAAGGACAGAAGTACCATCATTAGCAGCAGCAGCAGCTCAAATGCCAGCTTAGCGGTATTTTGCCTTGATATGTTACATCTTTAGCTGTCTATTTCATATTCACAATAGATGGAAAAGTTTAAGTTTGTGTATAAATTATCTCTTATTGCCATTATTGTAGGAAAGTTTGTTGCTTATTTTGTCCAAAGCATTTCCCTCCTGATCTTTCGTGTACGAATATTAATTCGTCAACTACTCTTAAGTGTAAGTTCTAATGGGTCAAAAATTTTAACCTCGTCTTAAGGAAATTAATAGTTGTCTCAACCATTGTTGTATACCTATATTTGCTCCTGGATTCATGACGAAGGGAGCCTCAAGGTGGAGATTAACTATTTTCATCATTACACTTGATTTCTTCTCTTTTCTCTTT

Coding sequence (CDS)

ATGATTACTGCTCTCTCCACTGCCCTTTCCGCTTCTCCTTCAGGTGGACGCTGCAAGTACACCGGTCAATCTGTGAGAGCGGTGCCAATACGTGTTTTAACTGTGGGGAAGAAGAGGTCTCGTGGCGTACAGCTTCTTGTTGATGAGTATATTGATAAGCTCAAGAACTACTGCCATGTTGAAGATGTTCAACTGCGCTCAAATCCGAGGAATGCGAGGGATCCGAAAGCTCAGGTTGATGATGAAGACATGGCTGTCGTGAATCTTCTCAAGTCTGACGACTGGGTTGTGATGCTGGATGAGAATGGGAAAGAGATATCCTCCGAGCAGATGGCCGAGTTGGTGGCAGATGCAGGCAATACAGGTGCTTCAAGATTATCATTTTGCATTGGTGGACCGTATGGCCATGGACAACAACTGCGACAACGAGCTAACTTATCGATCAAGCTTTCCTCCATGGTATTAAATCATCAAATTGCACTACTTGTGCTTATGGAACAACTTTACAGGTCATGGACTATTCTAAAAGGACAGAAGTACCATCATTAG

Protein sequence

MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDMAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGNTGASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKYHH

Homology

[Close]

BLAST of PI0000907 vs. ExPASy Swiss-Prot
Match: Q9LXB4 (Putative RNA methyltransferase At5g10620 OS=Arabidopsis thaliana OX=3702 GN=At5g10620 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.5e-66
Identity = 126/177 (71.19%), Postives = 153/177 (86.44%), Query Frame = 0


Query: 10  SASPS----GGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQL 69
           SASP+    G  C+Y GQ+VRA+PIRV+TVGKKRS GV+LLVDEY  KLK YC  ED  +
Sbjct: 17  SASPTPQEKGRTCRYAGQAVRALPIRVITVGKKRSEGVRLLVDEYKIKLKPYCSFEDSLV 76

Query: 70  RSNPRNARDPKAQVDDEDMAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGNTGASR 129
           RSNPRNA+D +AQV+DE++A++ L+ SDDWVV+LDE G++I SEQMAEL+ DAGN+GASR
Sbjct: 77  RSNPRNAQDVRAQVEDEEVAMMKLIGSDDWVVVLDERGRDIDSEQMAELLGDAGNSGASR 136

Query: 130 LSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKYHH 183
           +SFCIGG YGHG Q+R+RAN++I+LSSMVLNHQIAL+VLMEQLYRSWTILKGQ YHH
Sbjct: 137 ISFCIGGAYGHGTQVRKRANVTIRLSSMVLNHQIALVVLMEQLYRSWTILKGQNYHH 193

[Close]

BLAST of PI0000907 vs. ExPASy Swiss-Prot
Match: A0M0D0 (Ribosomal RNA large subunit methyltransferase H OS=Gramella forsetii (strain KT0803) OX=411154 GN=rlmH PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 7.5e-23
Identity = 60/158 (37.97%), Postives = 94/158 (59.49%), Query Frame = 0


Query: 30  IRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVE-----DVQLRSNPRNARDPKAQVDDEDM 89
           I+++ +GK   + ++ L+  Y D+L++Y   E     D++   N     D   Q   E  
Sbjct: 3   IKLVCIGKTDKKELEALIKIYSDRLQHYIKFEFEIIPDLKKTKN----LDENQQKSKEGE 62

Query: 90  AVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGNTGASRLSFCIGGPYGHGQQLRQRA 149
            +++ +++ D+VV+LDENGK+ SSE  +E +    NTG  RL F IGGPYG  +++ +RA
Sbjct: 63  LILSGVQNSDFVVLLDENGKQFSSESFSEYIQKRMNTGLKRLIFVIGGPYGFSEEVYKRA 122

Query: 150 NLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKYHH 183
           +  I LS M  +HQ+  L   EQLYR++TILK + YHH
Sbjct: 123 DSKISLSKMTFSHQMVRLFFTEQLYRAFTILKNEPYHH 156

[Close]

BLAST of PI0000907 vs. ExPASy Swiss-Prot
Match: Q1DCX5 (Ribosomal RNA large subunit methyltransferase H OS=Myxococcus xanthus (strain DK1622) OX=246197 GN=rlmH PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-20
Identity = 60/152 (39.47%), Postives = 88/152 (57.89%), Query Frame = 0


Query: 30  IRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDMAVVNL 89
           +R+L++GK RS   +  V EY  +L +Y   E V++         P      E  A+++ 
Sbjct: 3   VRLLSIGKDRSGLYEPAVQEYAKRLGHYTRFELVEMAEASGKRLKPGDAKAAEAEAILSK 62

Query: 90  LKSDDWVVMLDENGKEISSEQMAELVADAGNTGASRLSFCIGGPYGHGQQLRQRANLSIK 149
            K  DW+V LDE G  + S +++  V  A  TGA  L F IGG  G   ++R  ANL++ 
Sbjct: 63  RKPQDWLVALDERGSLLDSVELSRYVGKA-QTGAKDLLFIIGGDEGLDARVRDAANLTLS 122

Query: 150 LSSMVLNHQIALLVLMEQLYRSWTILKGQKYH 182
           LS M L H++A +VL+EQLYR++TILKG+ YH
Sbjct: 123 LSKMTLPHRLARVVLIEQLYRAFTILKGEPYH 153

[Close]

BLAST of PI0000907 vs. ExPASy Swiss-Prot
Match: A0PXE8 (Ribosomal RNA large subunit methyltransferase H OS=Clostridium novyi (strain NT) OX=386415 GN=rlmH PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.9e-20
Identity = 55/156 (35.26%), Postives = 89/156 (57.05%), Query Frame = 0


Query: 30  IRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQL--RSNPRNA--RDPKAQVDDEDMA 89
           I ++ VGK + + ++L +DEY  +L  YC +  V+L     P NA  +D       E   
Sbjct: 3   ITIICVGKLKEKYLKLAIDEYSKRLSRYCKLNIVELNDEKTPDNASEKDELIIKQKEGSK 62

Query: 90  VVNLLKSDDWVVMLDENGKEISSEQMAELVADAGNTGASRLSFCIGGPYGHGQQLRQRAN 149
           ++  +K + +V+ LD NGK  SSE++AEL+ D G  G S ++  IGG  G  +++  RAN
Sbjct: 63  ILAHVKENMYVIALDLNGKMASSEELAELIGDLGLKGKSNIALVIGGSLGLSKEVLNRAN 122

Query: 150 LSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKYH 182
             +  S M   HQ+  ++L+EQ+YR++ I  G+ YH
Sbjct: 123 YKLSFSKMTFPHQLMRVILLEQIYRAYKINAGEPYH 158

[Close]

BLAST of PI0000907 vs. ExPASy Swiss-Prot
Match: A5FE53 (Ribosomal RNA large subunit methyltransferase H OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / NBRC 14942 / NCIMB 11054 / UW101) OX=376686 GN=rlmH PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-19
Identity = 52/155 (33.55%), Postives = 91/155 (58.71%), Query Frame = 0


Query: 30  IRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARD--PKAQVDDEDMAVV 89
           I+++ +GK  ++ +Q L+D+Y  +L  Y    D+++  + +N ++     Q + E   ++
Sbjct: 3   IKLIAIGKTDNKSLQTLIDDYTKRLSFYIKF-DLEIIPDIKNVKNLSESQQKEKEGELIL 62

Query: 90  NLLKSDDWVVMLDENGKEISSEQMAELVADAGNTGASRLSFCIGGPYGHGQQLRQRANLS 149
           + L + D +++LDENGK  SS   +E +    N+G   L F IGGPYG  + + ++A   
Sbjct: 63  SKLSATDQLILLDENGKTFSSVGFSEELQKKMNSGVKTLVFVIGGPYGFSETIYKKAQGK 122

Query: 150 IKLSSMVLNHQIALLVLMEQLYRSWTILKGQKYHH 183
           + LS M  +HQ+  L  +EQLYR +TIL+ + YHH
Sbjct: 123 VSLSLMTFSHQMVRLFFIEQLYRGFTILRNEPYHH 156

[Close]

BLAST of PI0000907 vs. ExPASy TrEMBL
Match: A0A1S3CQZ8 (putative RNA methyltransferase At5g10620 OS=Cucumis melo OX=3656 GN=LOC103503770 PE=3 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.4e-93
Identity = 178/182 (97.80%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60
           MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV
Sbjct: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60

Query: 61  EDVQLRSNPRNARDPKAQVDDEDMAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120
           EDVQLRSNPRNARDPKAQ+DDED+AVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN
Sbjct: 61  EDVQLRSNPRNARDPKAQIDDEDVAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120

Query: 121 TGASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180
           TGASRLSFCIGGPYGHGQ+LR+RANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY
Sbjct: 121 TGASRLSFCIGGPYGHGQKLRERANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180

Query: 181 HH 183
           HH
Sbjct: 181 HH 182

[Close]

BLAST of PI0000907 vs. ExPASy TrEMBL
Match: A0A0A0LGS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881670 PE=3 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 3.5e-92
Identity = 177/182 (97.25%), Postives = 179/182 (98.35%), Query Frame = 0


Query: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60
           MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV
Sbjct: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60

Query: 61  EDVQLRSNPRNARDPKAQVDDEDMAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120
           EDVQLRSNPRNARDPKAQVDDED+AVVNLLK DDWVVMLDENGKE+SSE MAELVADAGN
Sbjct: 61  EDVQLRSNPRNARDPKAQVDDEDVAVVNLLKPDDWVVMLDENGKELSSELMAELVADAGN 120

Query: 121 TGASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180
           T ASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY
Sbjct: 121 TSASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180

Query: 181 HH 183
           HH
Sbjct: 181 HH 182

[Close]

BLAST of PI0000907 vs. ExPASy TrEMBL
Match: A0A6J1FPF2 (putative RNA methyltransferase At5g10620 OS=Cucurbita moschata OX=3662 GN=LOC111446064 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 6.2e-89
Identity = 169/182 (92.86%), Postives = 177/182 (97.25%), Query Frame = 0


Query: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60
           M+TAL   +SASPS GRCKYTGQSVRAVPIRVLTVGKKRSRGVQLL+DEYIDKL NYC+V
Sbjct: 1   MVTALCATISASPSVGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLIDEYIDKLNNYCNV 60

Query: 61  EDVQLRSNPRNARDPKAQVDDEDMAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120
           EDVQLRSNPRNARDP+AQVDDED+AVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN
Sbjct: 61  EDVQLRSNPRNARDPRAQVDDEDIAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120

Query: 121 TGASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180
           TGASRL+FCIGGPYGHGQQLRQRAN+SIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY
Sbjct: 121 TGASRLAFCIGGPYGHGQQLRQRANVSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180

Query: 181 HH 183
           HH
Sbjct: 181 HH 182

[Close]

BLAST of PI0000907 vs. ExPASy TrEMBL
Match: A0A6J1IWR3 (putative RNA methyltransferase At5g10620 OS=Cucurbita maxima OX=3661 GN=LOC111481296 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.5e-87
Identity = 167/182 (91.76%), Postives = 175/182 (96.15%), Query Frame = 0


Query: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60
           M+TAL   +SASPS GRCKYTGQSVRAVPIRVLTVGKKRSRGVQLL+DEYIDKL NYC+V
Sbjct: 1   MVTALCATISASPSVGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLIDEYIDKLNNYCNV 60

Query: 61  EDVQLRSNPRNARDPKAQVDDEDMAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120
           EDVQLRSNPRN RD +AQVDDED+AVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN
Sbjct: 61  EDVQLRSNPRNTRDARAQVDDEDIAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120

Query: 121 TGASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180
           TGASRLSFCIGGPYGHGQQLRQRAN+SIKLSSMVLNHQIA+LVLMEQLYRSWTILKGQKY
Sbjct: 121 TGASRLSFCIGGPYGHGQQLRQRANVSIKLSSMVLNHQIAVLVLMEQLYRSWTILKGQKY 180

Query: 181 HH 183
           HH
Sbjct: 181 HH 182

[Close]

BLAST of PI0000907 vs. ExPASy TrEMBL
Match: A0A6J1BPR4 (putative RNA methyltransferase At5g10620 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111026123 PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 1.0e-86
Identity = 168/186 (90.32%), Postives = 179/186 (96.24%), Query Frame = 0


Query: 1   MITALSTALSA----SPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKN 60
           M++AL  +LSA    SPSGGRCKYT QSVRAVPIRVLTVGKKRSRGVQL+VDEYI+KLK+
Sbjct: 1   MVSALCASLSASASPSPSGGRCKYTAQSVRAVPIRVLTVGKKRSRGVQLVVDEYIEKLKH 60

Query: 61  YCHVEDVQLRSNPRNARDPKAQVDDEDMAVVNLLKSDDWVVMLDENGKEISSEQMAELVA 120
           YC+VEDVQLRSNPRNARDP+AQVDDEDMAVVNLLKSDDWVVMLDENGKE+SSE+MAELVA
Sbjct: 61  YCNVEDVQLRSNPRNARDPRAQVDDEDMAVVNLLKSDDWVVMLDENGKEMSSERMAELVA 120

Query: 121 DAGNTGASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLMEQLYRSWTILK 180
           DAGNTGASRLSFCIGGPYGHGQQLRQRANL+IKLSSMVLNHQIALLVLMEQLYRSWTILK
Sbjct: 121 DAGNTGASRLSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYRSWTILK 180

Query: 181 GQKYHH 183
           GQKYHH
Sbjct: 181 GQKYHH 186

[Close]

BLAST of PI0000907 vs. NCBI nr
Match: XP_008466330.1 (PREDICTED: putative RNA methyltransferase At5g10620 [Cucumis melo] >XP_008466331.1 PREDICTED: putative RNA methyltransferase At5g10620 [Cucumis melo])

HSP 1 Score: 352.1 bits (902), Expect = 3.0e-93
Identity = 178/182 (97.80%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60
           MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV
Sbjct: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60

Query: 61  EDVQLRSNPRNARDPKAQVDDEDMAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120
           EDVQLRSNPRNARDPKAQ+DDED+AVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN
Sbjct: 61  EDVQLRSNPRNARDPKAQIDDEDVAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120

Query: 121 TGASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180
           TGASRLSFCIGGPYGHGQ+LR+RANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY
Sbjct: 121 TGASRLSFCIGGPYGHGQKLRERANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180

Query: 181 HH 183
           HH
Sbjct: 181 HH 182

[Close]

BLAST of PI0000907 vs. NCBI nr
Match: XP_011652513.1 (putative RNA methyltransferase At5g10620 isoform X4 [Cucumis sativus])

HSP 1 Score: 347.4 bits (890), Expect = 7.3e-92
Identity = 177/182 (97.25%), Postives = 179/182 (98.35%), Query Frame = 0


Query: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60
           MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV
Sbjct: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60

Query: 61  EDVQLRSNPRNARDPKAQVDDEDMAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120
           EDVQLRSNPRNARDPKAQVDDED+AVVNLLK DDWVVMLDENGKE+SSE MAELVADAGN
Sbjct: 61  EDVQLRSNPRNARDPKAQVDDEDVAVVNLLKPDDWVVMLDENGKELSSELMAELVADAGN 120

Query: 121 TGASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180
           T ASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY
Sbjct: 121 TSASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180

Query: 181 HH 183
           HH
Sbjct: 181 HH 182

[Close]

BLAST of PI0000907 vs. NCBI nr
Match: XP_022940478.1 (putative RNA methyltransferase At5g10620 [Cucurbita moschata] >KAG6608193.1 putative RNA methyltransferase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 336.7 bits (862), Expect = 1.3e-88
Identity = 169/182 (92.86%), Postives = 177/182 (97.25%), Query Frame = 0


Query: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60
           M+TAL   +SASPS GRCKYTGQSVRAVPIRVLTVGKKRSRGVQLL+DEYIDKL NYC+V
Sbjct: 1   MVTALCATISASPSVGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLIDEYIDKLNNYCNV 60

Query: 61  EDVQLRSNPRNARDPKAQVDDEDMAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120
           EDVQLRSNPRNARDP+AQVDDED+AVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN
Sbjct: 61  EDVQLRSNPRNARDPRAQVDDEDIAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120

Query: 121 TGASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180
           TGASRL+FCIGGPYGHGQQLRQRAN+SIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY
Sbjct: 121 TGASRLAFCIGGPYGHGQQLRQRANVSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180

Query: 181 HH 183
           HH
Sbjct: 181 HH 182

[Close]

BLAST of PI0000907 vs. NCBI nr
Match: XP_004136319.1 (putative RNA methyltransferase At5g10620 isoform X2 [Cucumis sativus] >KAE8651373.1 hypothetical protein Csa_002160 [Cucumis sativus])

HSP 1 Score: 335.5 bits (859), Expect = 2.9e-88
Identity = 177/202 (87.62%), Postives = 179/202 (88.61%), Query Frame = 0


Query: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60
           MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV
Sbjct: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60

Query: 61  EDVQLRSNPRNARDPKAQVDDEDMAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120
           EDVQLRSNPRNARDPKAQVDDED+AVVNLLK DDWVVMLDENGKE+SSE MAELVADAGN
Sbjct: 61  EDVQLRSNPRNARDPKAQVDDEDVAVVNLLKPDDWVVMLDENGKELSSELMAELVADAGN 120

Query: 121 T--------------------GASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIA 180
           T                     ASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIA
Sbjct: 121 TVSSCHHAPIVSGNNFNRAIGSASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIA 180

Query: 181 LLVLMEQLYRSWTILKGQKYHH 183
           LLVLMEQLYRSWTILKGQKYHH
Sbjct: 181 LLVLMEQLYRSWTILKGQKYHH 202

[Close]

BLAST of PI0000907 vs. NCBI nr
Match: XP_022982492.1 (putative RNA methyltransferase At5g10620 [Cucurbita maxima] >XP_022982493.1 putative RNA methyltransferase At5g10620 [Cucurbita maxima])

HSP 1 Score: 332.0 bits (850), Expect = 3.2e-87
Identity = 167/182 (91.76%), Postives = 175/182 (96.15%), Query Frame = 0


Query: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60
           M+TAL   +SASPS GRCKYTGQSVRAVPIRVLTVGKKRSRGVQLL+DEYIDKL NYC+V
Sbjct: 1   MVTALCATISASPSVGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLIDEYIDKLNNYCNV 60

Query: 61  EDVQLRSNPRNARDPKAQVDDEDMAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120
           EDVQLRSNPRN RD +AQVDDED+AVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN
Sbjct: 61  EDVQLRSNPRNTRDARAQVDDEDIAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120

Query: 121 TGASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180
           TGASRLSFCIGGPYGHGQQLRQRAN+SIKLSSMVLNHQIA+LVLMEQLYRSWTILKGQKY
Sbjct: 121 TGASRLSFCIGGPYGHGQQLRQRANVSIKLSSMVLNHQIAVLVLMEQLYRSWTILKGQKY 180

Query: 181 HH 183
           HH
Sbjct: 181 HH 182

[Close]

BLAST of PI0000907 vs. TAIR 10
Match: AT5G10620.1 (methyltransferases )

HSP 1 Score: 253.1 bits (645), Expect = 1.7e-67
Identity = 126/177 (71.19%), Postives = 153/177 (86.44%), Query Frame = 0


Query: 10  SASPS----GGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQL 69
           SASP+    G  C+Y GQ+VRA+PIRV+TVGKKRS GV+LLVDEY  KLK YC  ED  +
Sbjct: 17  SASPTPQEKGRTCRYAGQAVRALPIRVITVGKKRSEGVRLLVDEYKIKLKPYCSFEDSLV 76

Query: 70  RSNPRNARDPKAQVDDEDMAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGNTGASR 129
           RSNPRNA+D +AQV+DE++A++ L+ SDDWVV+LDE G++I SEQMAEL+ DAGN+GASR
Sbjct: 77  RSNPRNAQDVRAQVEDEEVAMMKLIGSDDWVVVLDERGRDIDSEQMAELLGDAGNSGASR 136

Query: 130 LSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKYHH 183
           +SFCIGG YGHG Q+R+RAN++I+LSSMVLNHQIAL+VLMEQLYRSWTILKGQ YHH
Sbjct: 137 ISFCIGGAYGHGTQVRKRANVTIRLSSMVLNHQIALVVLMEQLYRSWTILKGQNYHH 193

[Close]

BLAST of PI0000907 vs. TAIR 10
Match: AT5G10605.1 (methyltransferases )

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-08
Identity = 27/36 (75.00%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 131 GGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLME 167
           G  YGHG+QLR+RAN++I+LSSMVLNH IAL+VLME
Sbjct: 21  GVAYGHGRQLRKRANVAIRLSSMVLNHHIALVVLME 56

[Close]

BLAST of PI0000907 vs. TAIR 10
Match: AT5G10605.2 (methyltransferases )

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-08
Identity = 27/36 (75.00%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 131 GGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLME 167
           G  YGHG+QLR+RAN++I+LSSMVLNH IAL+VLME
Sbjct: 21  GVAYGHGRQLRKRANVAIRLSSMVLNHHIALVVLME 56

The following BLAST results are available for this feature:

BLAST of PI0000907 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXB4	2.5e-66	71.19	Putative RNA methyltransferase At5g10620 OS=Arabidopsis thaliana OX=3702 GN=At5g...	[more]
A0M0D0	7.5e-23	37.97	Ribosomal RNA large subunit methyltransferase H OS=Gramella forsetii (strain KT0...	[more]
Q1DCX5	1.6e-20	39.47	Ribosomal RNA large subunit methyltransferase H OS=Myxococcus xanthus (strain DK...	[more]
A0PXE8	5.9e-20	35.26	Ribosomal RNA large subunit methyltransferase H OS=Clostridium novyi (strain NT)...	[more]
A5FE53	1.3e-19	33.55	Ribosomal RNA large subunit methyltransferase H OS=Flavobacterium johnsoniae (st...	[more]

BLAST of PI0000907 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CQZ8	1.4e-93	97.80	putative RNA methyltransferase At5g10620 OS=Cucumis melo OX=3656 GN=LOC103503770...	[more]
A0A0A0LGS0	3.5e-92	97.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881670 PE=3 SV=1	[more]
A0A6J1FPF2	6.2e-89	92.86	putative RNA methyltransferase At5g10620 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1IWR3	1.5e-87	91.76	putative RNA methyltransferase At5g10620 OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1BPR4	1.0e-86	90.32	putative RNA methyltransferase At5g10620 isoform X2 OS=Momordica charantia OX=36...	[more]

BLAST of PI0000907 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466330.1	3.0e-93	97.80	PREDICTED: putative RNA methyltransferase At5g10620 [Cucumis melo] >XP_008466331...	[more]
XP_011652513.1	7.3e-92	97.25	putative RNA methyltransferase At5g10620 isoform X4 [Cucumis sativus]	[more]
XP_022940478.1	1.3e-88	92.86	putative RNA methyltransferase At5g10620 [Cucurbita moschata] >KAG6608193.1 puta...	[more]
XP_004136319.1	2.9e-88	87.62	putative RNA methyltransferase At5g10620 isoform X2 [Cucumis sativus] >KAE865137...	[more]
XP_022982492.1	3.2e-87	91.76	putative RNA methyltransferase At5g10620 [Cucurbita maxima] >XP_022982493.1 puta...	[more]

BLAST of PI0000907 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10620.1	1.7e-67	71.19	methyltransferases	[more]
AT5G10605.1	3.1e-08	75.00	methyltransferases	[more]
AT5G10605.2	3.1e-08	75.00	methyltransferases	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003742	RNA methyltransferase RlmH	PIRSF	PIRSF004505	MT_bac	coord: 28..182 e-value: 9.6E-54 score: 179.7
IPR003742	RNA methyltransferase RlmH	PFAM	PF02590	SPOUT_MTase	coord: 30..181 e-value: 2.9E-46 score: 157.3
IPR003742	RNA methyltransferase RlmH	PANTHER	PTHR33603	METHYLTRANSFERASE	coord: 7..182
IPR003742	RNA methyltransferase RlmH	HAMAP	MF_00658	23SrRNA_methyltr_H	coord: 28..182 score: 23.335264
IPR003742	RNA methyltransferase RlmH	CDD	cd18081	RlmH-like	coord: 30..182 e-value: 1.06994E-62 score: 188.805
IPR029026	tRNA (guanine-N1-)-methyltransferase, N-terminal	GENE3D	3.40.1280.10		coord: 27..182 e-value: 3.4E-49 score: 168.4
None	No IPR available	SFLD	SFLDS00070	SPOUT_Methyltransferase	coord: 10..182 e-value: 0.0 score: 254.6
IPR029028	Alpha/beta knot methyltransferases	SUPERFAMILY	75217	alpha/beta knot	coord: 30..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0000907.1	PI0000907.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0006364	rRNA processing
molecular_function	GO:0008168	methyltransferase activity