PI0000850 (gene) Melon (PI 482460) v1

Overview
NamePI0000850
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Description30S ribosomal protein S16
Locationchr02: 2281785 .. 2284384 (-)
RNA-Seq ExpressionPI0000850
SyntenyPI0000850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGAGAAGTGGAGGCGCCACTTCCGTTCTGTAATCCATCGTCATTTCAATTTTGCGAATTTTCAAGATTTTTGTAGGGTTTTTACGAGCTCAAAAATGGTGGTTCGAATTCGATTGTCCAGATTTGGTTGTAAGAACAAGCCGTTTTACAGGGTCATGGCTGCCGATGTCCGATCTCCTCGTGACGGCAAACATCTTGAGATTCTAGGTTACTATAATCCCCTACCAGGTTAGTTTAATGATTACTCTTGTTAACTTGCGTTTTGGAATTTAGATAATTTGAATGTTTCTTTTCTGTTTTTTCTTCATTTGGTTAATTTTTTTGTTTGTAGGTCAGGATGGTGGTAAACGAATGGGTCTTAATTTTGAAAGAGTGAAGTAAGTGATTGTTTTTTTTTTATGTATACTTTAATTCATTCTAAAATATGCTTGGTTCTTGAATTTAAACACTGGGTTGCTATTGTAAATGCTAGATTATTTGTTAGTCAGAATAGACTACACTGTTGTCAGTGCTTTTCAATCGACTTTTACTTGATTTTTTTTTTAAATTTTCGATTTGTCTCCATGTTGCTTAGAGTGTTATTAAGAAAATGTCTTAACTTATTTTCATTTGGTTTTTGTTATGGGACACAAACCAGCCCTTAAATGTAGATATTCGGTATATTAGTAAATGAATGTTCCCAGATTTTCTTCCAGACAATATTCATTTTTATTTCTCATTAAAATGAATGGCGTCATAACCAATGGGGAGACTAGTAGCAGACCAACTTTCATGATATTATACATCTACCTTGTAGATCTCGTCTTATTGACCATACCACACGCCTCTAGTCCGTCAAAGTCACTGAATGAGTATGTTGTGAATCCCTAAAACAGACTATATGTCATATACGCGTTTGTTTGGTTTGTTCATTCTGTACCAATACAAATCATTAAACCCACCCTGAATAATCCACCTTTGCGGGATCAAATCCATCATCAAAATTGGAGGGGTCACTAATATTTGACTTTCTGGCGCATGAACAAAGCATTTACCTTATCTTGCTGTTATTGTACTTATTGTAGTTAGTCTAATATGTTAACAATACAAACTAGCTGAAACTGTAAGGCCTGGTGGTGAAGCAACGTGCTATAGAAACAAGAGGTCCTAATTCTAAATTATGCTATATTACTTTGTATACCATTTCATACTAACAGTTAACATCTGGCACCTCATGAATCAAAGAATGGAAACCGGTTTGGATGGTTGAGAAGTGATATTTTCTTAATATCATAAGCTTTTAACTGTAGTAGCTGGCTATCAAGTTGATGGAGAGGATGAGGAAATCCTTAATTTTTGGAGCATCTAGTCATTTGATGAAGTGATTAGGCTGCTCCTTAAGAATTTAAAGTCTTCTGTTTCTAATTCAAGTTCTGATTAATGATTAGTAGACATCTCAGTGGACAAAAAATTTAAGATGAAGTTGTTGTCTTAGAAGATCATTCTTATTGTATGATCTCATGCAATGTATAAAAGTAAACTATCAGGCATAAGTTTTTAGCATTTAGAGTTTGGTCTCTGAGTTCTTTGTGGCTTAGATCCTATCAGTTCTAAATTCCCCCAATCCCTTGATTGCTCTAAATTCTCATAAGCGCTCCTTTTCTTTTTCTTTCTTTTACTTGATCCTATATTTCAAAAAGAGTTGCTATTAGCTGAGACTGGATAATTTTGATTATTTTGCTGCATCAGCTGTGATGTTTTACTATGGTAGTATTCATCTAACTCATAGGCACAACAACCTCGTCTTTCATACTAATCATTCACTCATCACCCTTTCCCATCCATTTAGGTATTGGCTTTCAGTTGGTGCTCAGCCTTCGGAACCCGTGCAGCGTATTCTTTTTAGAGCAGGGGTACTTCCACCGCCCCCAATGGTTGCAATGGCACGTAAAGGCGGACCACGTGATACTCGTCCTGTTGATCCTTTGAGCGGACGCTTCGTCACTCCAGAGAAGAAGCCAACTGATGGTTCCAATGGTAAAGATGGTGATGCCGATTCATAGTTTTCTTTCAGAAAAATCTCTGGCTCTGGAATCATTCAAATGTGATGTCCAACTCGTCCTGTTGTTCAGGTAAAATAGTTCAATAAATCGGTCCATTTACTTTTGATTACAAGATGCAGTTTTTGATAGGGAATTAGAAAAAGCCAAGTAGTTTCAGTTTATTCTGGAACATTAAAATGGAGTCTGTAGATATTATCAATGTCCAATCCTCCAGTACCAAGGCATAGTCGGGTTGTTGGACTGAGCTTATCTCACTGAAGATTAGCCATTACGTTGAGAAAACATGATCTTGTTGTCTAATTTAAACAAGACTACATCTCTGTTTTGGTCTTCCTTTGTTATGTTATGTTGATTAAAACGAGAGAAATATCATTTTGCTTTTCTAGTTGCCAGATTTTGAAAACACCATATTTTATCACTTTTTGTTCATTTGATACTTATGTACACTGATTTGCTGAGGTGAGTTAATCTTCCATCTTGAAAATCTTCTATTTGAGGCGAGGAGTGGAGTTGTTAAAGGCTCGAGAGTTGTGAACTCTTGGAGTTGTACAATGTAAC

mRNA sequence

GTGAGAAGTGGAGGCGCCACTTCCGTTCTGTAATCCATCGTCATTTCAATTTTGCGAATTTTCAAGATTTTTGTAGGGTTTTTACGAGCTCAAAAATGGTGGTTCGAATTCGATTGTCCAGATTTGGTTGTAAGAACAAGCCGTTTTACAGGGTCATGGCTGCCGATGTCCGATCTCCTCGTGACGGCAAACATCTTGAGATTCTAGGTTACTATAATCCCCTACCAGGTCAGGATGGTGGTAAACGAATGGGTCTTAATTTTGAAAGAGTGAAGTATTGGCTTTCAGTTGGTGCTCAGCCTTCGGAACCCGTGCAGCGTATTCTTTTTAGAGCAGGGGTACTTCCACCGCCCCCAATGGTTGCAATGGCACGTAAAGGCGGACCACGTGATACTCGTCCTGTTGATCCTTTGAGCGGACGCTTCGTCACTCCAGAGAAGAAGCCAACTGATGGTTCCAATGGTAAAGATGGTGATGCCGATTCATAGTTTTCTTTCAGAAAAATCTCTGGCTCTGGAATCATTCAAATGTGATGTCCAACTCGTCCTGTTGTTCAGGTAAAATAGTTCAATAAATCGGTCCATTTACTTTTGATTACAAGATGCAGTTTTTGATAGGGAATTAGAAAAAGCCAAGTAGTTTCAGTTTATTCTGGAACATTAAAATGGAGTCTGTAGATATTATCAATGTCCAATCCTCCAGTACCAAGGCATAGTCGGGTTGTTGGACTGAGCTTATCTCACTGAAGATTAGCCATTACGTTGAGAAAACATGATCTTGTTGTCTAATTTAAACAAGACTACATCTCTGTTTTGGTCTTCCTTTGTTATGTTATGTTGATTAAAACGAGAGAAATATCATTTTGCTTTTCTAGTTGCCAGATTTTGAAAACACCATATTTTATCACTTTTTGTTCATTTGATACTTATGTACACTGATTTGCTGAGGTGAGTTAATCTTCCATCTTGAAAATCTTCTATTTGAGGCGAGGAGTGGAGTTGTTAAAGGCTCGAGAGTTGTGAACTCTTGGAGTTGTACAATGTAAC

Coding sequence (CDS)

ATGGTGGTTCGAATTCGATTGTCCAGATTTGGTTGTAAGAACAAGCCGTTTTACAGGGTCATGGCTGCCGATGTCCGATCTCCTCGTGACGGCAAACATCTTGAGATTCTAGGTTACTATAATCCCCTACCAGGTCAGGATGGTGGTAAACGAATGGGTCTTAATTTTGAAAGAGTGAAGTATTGGCTTTCAGTTGGTGCTCAGCCTTCGGAACCCGTGCAGCGTATTCTTTTTAGAGCAGGGGTACTTCCACCGCCCCCAATGGTTGCAATGGCACGTAAAGGCGGACCACGTGATACTCGTCCTGTTGATCCTTTGAGCGGACGCTTCGTCACTCCAGAGAAGAAGCCAACTGATGGTTCCAATGGTAAAGATGGTGATGCCGATTCATAG

Protein sequence

MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKKPTDGSNGKDGDADS
Homology
[Close]
BLAST of PI0000850 vs. ExPASy Swiss-Prot
Match: Q9LTS6 (30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS16-2 PE=1 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 9.0e-55
Identity = 97/130 (74.62%), Postives = 116/130 (89.23%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKN+PF+RVMAAD RSPRDGKHLE+LGY+NPLPGQDGGKRMGL F+R+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKKPTDG 120
           YWLSVGAQPS+PVQR+LFR+G+LPPPPMVAM RKGG RDTRPVDP++GR+V  E K  + 
Sbjct: 61  YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVDAENKTVNA 120

Query: 121 SNGKDGDADS 131
           ++ +  + D+
Sbjct: 121 NDNQPKEEDT 130

[Close]
BLAST of PI0000850 vs. ExPASy Swiss-Prot
Match: O65686 (30S ribosomal protein S16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS16-1 PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.1e-31
Identity = 59/112 (52.68%), Postives = 86/112 (76.79%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK 60
           M V+IRL+R GCK++PFYRV+ AD +S RDGK +E+LG+Y+PL G++   R+ L F+R+K
Sbjct: 1   MTVKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT-RPVDPLSGRFV 112
           YWLSVGAQP++ V+ +LFRAG++PP PMV +  K G + T + V P++G  +
Sbjct: 61  YWLSVGAQPTDTVESMLFRAGLIPPKPMVVVGSKNGQKSTSQHVSPITGEIL 112

[Close]
BLAST of PI0000850 vs. ExPASy Swiss-Prot
Match: A5V9P7 (30S ribosomal protein S16 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) OX=392499 GN=rpsP PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-19
Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 0 

Query: 1  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK 60
          M V IRL+R G K +P+YR++ AD RSPRDG  +E +G YNPL  +D  KR+ L+ +R K
Sbjct: 1  MAVSIRLARGGAKKRPYYRIVVADARSPRDGAFIEKIGAYNPLLAKDDPKRVVLDTDRAK 60

Query: 61 YWLSVGAQPSEPVQRILFRAGV 83
          +WLSVGAQP++ V R L  AGV
Sbjct: 61 HWLSVGAQPTDRVARFLDAAGV 82

[Close]
BLAST of PI0000850 vs. ExPASy Swiss-Prot
Match: A8LMC0 (30S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12) OX=398580 GN=rpsP PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.1e-19
Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 0 

Query: 1  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK 60
          M ++IRL+R G K +PFYR++AAD R PRDG+ +E LG YNPL  +D   R+ ++ ERV+
Sbjct: 1  MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEDRVKMDLERVQ 60

Query: 61 YWLSVGAQPSEPVQRILFRAGVLP 85
          YWL  GA+P++ V R+L  A VLP
Sbjct: 61 YWLGEGAKPTDRVARMLEAAEVLP 84

[Close]
BLAST of PI0000850 vs. ExPASy Swiss-Prot
Match: B3PR16 (30S ribosomal protein S16 OS=Rhizobium etli (strain CIAT 652) OX=491916 GN=rpsP PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.1e-19
Identity = 44/82 (53.66%), Postives = 59/82 (71.95%), Query Frame = 0 

Query: 1  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK 60
          M ++IRL+R G K +P+Y V+ AD RSPRDG+ LE LG +NP+  +D  KR+ LN ER+K
Sbjct: 1  MALKIRLARGGSKKRPYYHVVLADARSPRDGRFLENLGSWNPMLAKDDEKRVQLNAERIK 60

Query: 61 YWLSVGAQPSEPVQRILFRAGV 83
          +WL  GAQP++ V R L  AGV
Sbjct: 61 HWLDNGAQPTDRVLRFLNEAGV 82

[Close]
BLAST of PI0000850 vs. ExPASy TrEMBL
Match: A0A5D3CDW9 (30S ribosomal protein S16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001970 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.3e-64
Identity = 121/130 (93.08%), Postives = 126/130 (96.92%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAAD RSPRDGKHLEILGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKKPTDG 120
           YWLSVGAQPS+P+QRILFRAG+LPPPPMVAM RKGGPRDTRPVDPLSGRFVTPEKKPTD 
Sbjct: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120

Query: 121 SNGKDGDADS 131
           SNG+ GDADS
Sbjct: 121 SNGEVGDADS 130

[Close]
BLAST of PI0000850 vs. ExPASy TrEMBL
Match: A0A1S3BQ70 (30S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103492337 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.3e-64
Identity = 121/130 (93.08%), Postives = 126/130 (96.92%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAAD RSPRDGKHLEILGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKKPTDG 120
           YWLSVGAQPS+P+QRILFRAG+LPPPPMVAM RKGGPRDTRPVDPLSGRFVTPEKKPTD 
Sbjct: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120

Query: 121 SNGKDGDADS 131
           SNG+ GDADS
Sbjct: 121 SNGEVGDADS 130

[Close]
BLAST of PI0000850 vs. ExPASy TrEMBL
Match: A0A6J1D251 (30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111016603 PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.4e-63
Identity = 122/130 (93.85%), Postives = 126/130 (96.92%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK 60
           MVVR+RLSRFGCKNKPFYRVMAAD RSPRDGKHLE+LGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKKPTDG 120
           YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPE KPTD 
Sbjct: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPE-KPTDD 120

Query: 121 SNGKDGDADS 131
           S+ KDG+ADS
Sbjct: 121 SSSKDGNADS 129

[Close]
BLAST of PI0000850 vs. ExPASy TrEMBL
Match: A0A6J1HXD7 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111467724 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.2e-62
Identity = 118/130 (90.77%), Postives = 123/130 (94.62%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAAD RSPRDGKHLE+LGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKKPTDG 120
           YWLSVGAQPS+PVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRF TP+K   D 
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120

Query: 121 SNGKDGDADS 131
           ++ KDGDADS
Sbjct: 121 NSSKDGDADS 130

[Close]
BLAST of PI0000850 vs. ExPASy TrEMBL
Match: A0A0A0LZG2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G589640 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62
Identity = 120/130 (92.31%), Postives = 124/130 (95.38%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAAD RSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKKPTDG 120
           YWLSVGAQPS+PVQRILFR+G+LPPPPMVAM RKGGPRDTRPVDPLSGRFVTP KKPTDG
Sbjct: 61  YWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPAKKPTDG 120

Query: 121 SNGKDGDADS 131
           SN   G+ADS
Sbjct: 121 SN---GEADS 127

[Close]
BLAST of PI0000850 vs. NCBI nr
Match: XP_008450874.1 (PREDICTED: 30S ribosomal protein S16 [Cucumis melo] >KAA0055812.1 30S ribosomal protein S16 [Cucumis melo var. makuwa] >TYK10063.1 30S ribosomal protein S16 [Cucumis melo var. makuwa])

HSP 1 Score: 255.4 bits (651), Expect = 2.7e-64
Identity = 121/130 (93.08%), Postives = 126/130 (96.92%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAAD RSPRDGKHLEILGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKKPTDG 120
           YWLSVGAQPS+P+QRILFRAG+LPPPPMVAM RKGGPRDTRPVDPLSGRFVTPEKKPTD 
Sbjct: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120

Query: 121 SNGKDGDADS 131
           SNG+ GDADS
Sbjct: 121 SNGEVGDADS 130

[Close]
BLAST of PI0000850 vs. NCBI nr
Match: XP_038880699.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X2 [Benincasa hispida])

HSP 1 Score: 252.3 bits (643), Expect = 2.3e-63
Identity = 123/130 (94.62%), Postives = 126/130 (96.92%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAAD RSPRDGKHLE+LGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKKPTDG 120
           YWLSVGAQPS+PVQRILFRAGVLPPPPMVAMARKGGPRDTR VDPLSGRFVTPE KPTD 
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRLVDPLSGRFVTPE-KPTDS 120

Query: 121 SNGKDGDADS 131
           S+GKDGDADS
Sbjct: 121 SSGKDGDADS 129

[Close]
BLAST of PI0000850 vs. NCBI nr
Match: XP_022147743.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 251.9 bits (642), Expect = 3.0e-63
Identity = 122/130 (93.85%), Postives = 126/130 (96.92%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK 60
           MVVR+RLSRFGCKNKPFYRVMAAD RSPRDGKHLE+LGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKKPTDG 120
           YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPE KPTD 
Sbjct: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPE-KPTDD 120

Query: 121 SNGKDGDADS 131
           S+ KDG+ADS
Sbjct: 121 SSSKDGNADS 129

[Close]
BLAST of PI0000850 vs. NCBI nr
Match: XP_022968515.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 248.8 bits (634), Expect = 2.5e-62
Identity = 118/130 (90.77%), Postives = 123/130 (94.62%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAAD RSPRDGKHLE+LGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKKPTDG 120
           YWLSVGAQPS+PVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRF TP+K   D 
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120

Query: 121 SNGKDGDADS 131
           ++ KDGDADS
Sbjct: 121 NSSKDGDADS 130

[Close]
BLAST of PI0000850 vs. NCBI nr
Match: XP_011659994.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial [Cucumis sativus] >KGN66257.1 hypothetical protein Csa_007181 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 3.3e-62
Identity = 120/130 (92.31%), Postives = 124/130 (95.38%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAAD RSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKKPTDG 120
           YWLSVGAQPS+PVQRILFR+G+LPPPPMVAM RKGGPRDTRPVDPLSGRFVTP KKPTDG
Sbjct: 61  YWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPAKKPTDG 120

Query: 121 SNGKDGDADS 131
           SN   G+ADS
Sbjct: 121 SN---GEADS 127

[Close]
BLAST of PI0000850 vs. TAIR 10
Match: AT5G56940.1 (Ribosomal protein S16 family protein )

HSP 1 Score: 214.2 bits (544), Expect = 6.4e-56
Identity = 97/130 (74.62%), Postives = 116/130 (89.23%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKN+PF+RVMAAD RSPRDGKHLE+LGY+NPLPGQDGGKRMGL F+R+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKKPTDG 120
           YWLSVGAQPS+PVQR+LFR+G+LPPPPMVAM RKGG RDTRPVDP++GR+V  E K  + 
Sbjct: 61  YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVDAENKTVNA 120

Query: 121 SNGKDGDADS 131
           ++ +  + D+
Sbjct: 121 NDNQPKEEDT 130

[Close]
BLAST of PI0000850 vs. TAIR 10
Match: AT4G34620.1 (small subunit ribosomal protein 16 )

HSP 1 Score: 135.6 bits (340), Expect = 2.9e-32
Identity = 59/112 (52.68%), Postives = 86/112 (76.79%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK 60
           M V+IRL+R GCK++PFYRV+ AD +S RDGK +E+LG+Y+PL G++   R+ L F+R+K
Sbjct: 1   MTVKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT-RPVDPLSGRFV 112
           YWLSVGAQP++ V+ +LFRAG++PP PMV +  K G + T + V P++G  +
Sbjct: 61  YWLSVGAQPTDTVESMLFRAGLIPPKPMVVVGSKNGQKSTSQHVSPITGEIL 112

[Close]
BLAST of PI0000850 vs. TAIR 10
Match: ATCG00050.1 (ribosomal protein S16 )

HSP 1 Score: 57.8 bits (138), Expect = 7.7e-09
Identity = 29/81 (35.80%), Postives = 46/81 (56.79%), Query Frame = 0 

Query: 2  VVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKY 61
          +V++RL R G K +  YR++A DVR  R+G+ L  +G+Y+P+  Q       LN   +  
Sbjct: 1  MVKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQ-----TFLNLSAILD 60

Query: 62 WLSVGAQPSEPVQRILFRAGV 83
          +L  GAQP+     I  +AG+
Sbjct: 61 FLKKGAQPTRTAHDISKKAGI 76

The following BLAST results are available for this feature:
BLAST of PI0000850 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LTS69.0e-5574.6230S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Arabidopsis thaliana... [more]
O656864.1e-3152.6830S ribosomal protein S16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP... [more]
A5V9P71.6e-1954.8830S ribosomal protein S16 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM... [more]
A8LMC06.1e-1952.3830S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14... [more]
B3PR166.1e-1953.6630S ribosomal protein S16 OS=Rhizobium etli (strain CIAT 652) OX=491916 GN=rpsP ... [more]
BLAST of PI0000850 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CDW91.3e-6493.0830S ribosomal protein S16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3BQ701.3e-6493.0830S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103492337 PE=3 SV=1[more]
A0A6J1D2511.4e-6393.8530S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Momordica charantia ... [more]
A0A6J1HXD71.2e-6290.7730S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita maxim... [more]
A0A0A0LZG21.6e-6292.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G589640 PE=3 SV=1[more]
BLAST of PI0000850 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008450874.12.7e-6493.08PREDICTED: 30S ribosomal protein S16 [Cucumis melo] >KAA0055812.1 30S ribosomal ... [more]
XP_038880699.12.3e-6394.6230S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X2 [Benincasa h... [more]
XP_022147743.13.0e-6393.8530S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia][more]
XP_022968515.12.5e-6290.7730S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita maxima][more]
XP_011659994.13.3e-6292.3130S ribosomal protein S16-2, chloroplastic/mitochondrial [Cucumis sativus] >KGN6... [more]
BLAST of PI0000850 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G56940.16.4e-5674.62Ribosomal protein S16 family protein [more]
AT4G34620.12.9e-3252.68small subunit ribosomal protein 16 [more]
ATCG00050.17.7e-0935.80ribosomal protein S16 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000307Ribosomal protein S16PFAMPF00886Ribosomal_S16coord: 9..70
e-value: 1.5E-25
score: 89.0
IPR000307Ribosomal protein S16TIGRFAMTIGR00002TIGR00002coord: 3..82
e-value: 6.6E-31
score: 104.2
IPR000307Ribosomal protein S16PANTHERPTHR1291930S RIBOSOMAL PROTEIN S16coord: 1..111
IPR000307Ribosomal protein S16HAMAPMF_00385Ribosomal_S16coord: 2..80
score: 23.375143
IPR023803Ribosomal protein S16 domain superfamilyGENE3D3.30.1320.10coord: 1..107
e-value: 5.1E-45
score: 154.4
IPR023803Ribosomal protein S16 domain superfamilySUPERFAMILY54565Ribosomal protein S16coord: 3..95
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..130
NoneNo IPR availablePANTHERPTHR12919:SF3030S RIBOSOMAL PROTEIN S16-LIKEcoord: 1..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0000850.1PI0000850.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000724 double-strand break repair via homologous recombination
biological_process GO:0006334 nucleosome assembly
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005634 nucleus
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0005524 ATP binding
molecular_function GO:0008094 ATP-dependent activity, acting on DNA
molecular_function GO:0003697 single-stranded DNA binding
molecular_function GO:0003735 structural constituent of ribosome