PI0000672 (gene) Melon (PI 482460) v1

Overview


Name	PI0000672
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr05: 19794993 .. 19797119 (-)
RNA-Seq Expression	PI0000672
Synteny	PI0000672

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACGTCTTCAAGGGCCCCTAAGTACCACTGGACGAAAGAGGAGGATTCCGTCCTCGTTGAATGTCTGATGGAGTTGGTATCTTCCGACGGGTGGAGGTCGGATAACGAGACTTTTAGAGCTGGATACCATAGTCATCTACATAGAATGATTGTCAAGAGGATGCCCGGACATAACATAACGGCTACGACAATAGATTGTCGGATCAAGACAATGAAAAGAGCATTCCAAGCGATATCTGAGATGAGGGGCCCGACGTGTAGTGGGTTCGGTTGGAATGATGAGCTAAAATGCATCATTGCCGAGAAAGACTTGTTCGACAGTTGGGTGAAGGTATGTTCTTTATTCTGTCCATTACTGTTCCTTTCTAATTATGAATTGTCTAATTTGTTACCACAACAACACTTGTACAGAGTCATCCAGCCGCAAAGGGTCTCCTAAACAAATCCTTTCCCCACTACGACGACCTCTGCTACGTGTTCGGAAGAGATCGTGTAACAGGAGGTCGAGCTGAAACCTTCGGCGATGTTGGGTCGAACGTGCCTCCAGGCTTCGAAGGATTTGCCCACTACGACGGGAACGATATGGAGAACCCGACGATGTACAGTCAGGGCCTGGACATGTCACCTGACGACATAATGACTCCACGATCGGTTCGTATGTCTGAGGCTAGGCCTAGTTCGAACGGGTCGAAGAGGAAACGGGGAGGGCAGACATTGGAGGCGGGTAAAATTATTCGTAGTGCCATGGAATATGCCAATGACCAACTTAAGGCCATTGTAGAATGGCCCAAGGAACAACGACAAGATGCAAGTGTGACACGTGCGGAAGTCGTTAGACAGCTACAGGGAATCCTGGAGCTGAGTCGACTAGATAGGGCTCGTTGTATGCGCATATTGATGCGTAGTGTGGACGACATGAAAGCATTTTTAGACATCCCGGACGAGGTTAAGTTGGATTACTGCACGGTCATACTCCAAGATGACGCTTGACTGCTTCCCGACTGCATTTGTAGGGCCTGTTTCTGTTGGGATTAGACAGTTGCTTGAAGACTTTGTTATGTTCTTATATTTGCCATGTTTGTTTCAGTATTGTACGCTTTTTTCAAACTATCGTTGCTAACTTCTGTTCTAGTTTTTATTTATGAATGGTATAATTATTCACGTTGACGTTCTGATTTCACATTTGTGAACGAAAAAAAAAACAAATTGAAATTTTTTTAACGATTTTAACACAAATTAGTAAAATAGACACGGTACGATGGAAAATAATGGAATAGCTATTAGGAAAAATGATTTTATGGTTAATTAAAATCAATGTATCATTTTGGTCAATTCCATCTACTTAAAAAAAAAAATTATATCATACACTAATATCATAACCCTTCCCCCAAACACATATTATCATAACACTACCTAACATAACCCTTCCCCCAAACACATATTATCATAAAACTAGTTTTATCATAACACTAACCCCCCATAAGTCACTCCTTCCCCCAAACGGCCCCTTAGTGTTCTTAATACTCTTTCCTCGAAAAAAACTCACCAAATTGATCATTAAATTGGTTCCACAACCAAATTCCAAGTATAGAAATTAGTAGAGAAGATCTTGGTGGTTGTCCTTAAATATTGCTTGATTAGAATCAACCAAAATAAGTGCAGAATTTGAGCTCTAAAGGTTAGTATCTTCAAACTCTGTTTTTTGTTCTATATTCAAACATGTTTAATCCTTCAAATTGGTGCAATTAGGATGATATTAGATTCAATTGCTTCCGTTGCATGTTCATTGACTCTTTCAATAAGGAAATGACTATCAACTCAATTCCAAATGAAAAATTTGAGAGAAGCTCAGTATGCTTTTGATATCCAAATTGTTCCGAATCGCAATAATAGGACGTTACTCATATCTTAGGCATCTTATATTGACAAGATGTTGTCCAAATATAAGATGTAACATTCCAAGACAGGTTTATTACCTTTCAGGCATGAAGTTCTTTCATCTAAAGAACAGTGTCTTAAGACACCTTAAAAAGTTGAGGCTATGAGATACATTCCCTATGCTTCAGCTGTAGGCAGTTTAATGTATGTAATGTTATGTACAGAGACATCTGTTATGCAGTAG

mRNA sequence

ATGGCAACGTCTTCAAGGGCCCCTAAGTACCACTGGACGAAAGAGGAGGATTCCGTCCTCGTTGAATGTCTGATGGAGTTGGTATCTTCCGACGGGTGGAGGTCGGATAACGAGACTTTTAGAGCTGGATACCATAGTCATCTACATAGAATGATTGTCAAGAGGATGCCCGGACATAACATAACGGCTACGACAATAGATTGTCGGATCAAGACAATGAAAAGAGCATTCCAAGCGATATCTGAGATGAGGGGCCCGACGTGTAGTGGGTTCGGTTGGAATGATGAGCTAAAATGCATCATTGCCGAGAAAGACTTGTTCGACAGTTGGGTGAAGAGTCATCCAGCCGCAAAGGGTCTCCTAAACAAATCCTTTCCCCACTACGACGACCTCTGCTACGTGTTCGGAAGAGATCGTGTAACAGGAGGTCGAGCTGAAACCTTCGGCGATGTTGGGTCGAACGTGCCTCCAGGCTTCGAAGGATTTGCCCACTACGACGGGAACGATATGGAGAACCCGACGATGTACAGTCAGGGCCTGGACATGTCACCTGACGACATAATGACTCCACGATCGGTTCGTATGTCTGAGGCTAGGCCTAGTTCGAACGGGTCGAAGAGGAAACGGGGAGGGCAGACATTGGAGGCGGGTAAAATTATTCGTAGTGCCATGGAATATGCCAATGACCAACTTAAGGCCATTGTAGAATGGCCCAAGGAACAACGACAAGATGCAAGTGTGACACGTGCGGAAGTCGTTAGACAGCTACAGGGAATCCTGGAGCTGAGTCGACTAGATAGGGCTCGTTGTATGCGCATATTGATGCGTAGTGTGGACGACATGAAAGCATTTTTAGACATCCCGGACGAGGTTAAGTTGGATTACTGCACGGCTATGAGATACATTCCCTATGCTTCAGCTGTAGGCAGTTTAATGTATGTAATGTTATGTACAGAGACATCTGTTATGCAGTAG

Coding sequence (CDS)

ATGGCAACGTCTTCAAGGGCCCCTAAGTACCACTGGACGAAAGAGGAGGATTCCGTCCTCGTTGAATGTCTGATGGAGTTGGTATCTTCCGACGGGTGGAGGTCGGATAACGAGACTTTTAGAGCTGGATACCATAGTCATCTACATAGAATGATTGTCAAGAGGATGCCCGGACATAACATAACGGCTACGACAATAGATTGTCGGATCAAGACAATGAAAAGAGCATTCCAAGCGATATCTGAGATGAGGGGCCCGACGTGTAGTGGGTTCGGTTGGAATGATGAGCTAAAATGCATCATTGCCGAGAAAGACTTGTTCGACAGTTGGGTGAAGAGTCATCCAGCCGCAAAGGGTCTCCTAAACAAATCCTTTCCCCACTACGACGACCTCTGCTACGTGTTCGGAAGAGATCGTGTAACAGGAGGTCGAGCTGAAACCTTCGGCGATGTTGGGTCGAACGTGCCTCCAGGCTTCGAAGGATTTGCCCACTACGACGGGAACGATATGGAGAACCCGACGATGTACAGTCAGGGCCTGGACATGTCACCTGACGACATAATGACTCCACGATCGGTTCGTATGTCTGAGGCTAGGCCTAGTTCGAACGGGTCGAAGAGGAAACGGGGAGGGCAGACATTGGAGGCGGGTAAAATTATTCGTAGTGCCATGGAATATGCCAATGACCAACTTAAGGCCATTGTAGAATGGCCCAAGGAACAACGACAAGATGCAAGTGTGACACGTGCGGAAGTCGTTAGACAGCTACAGGGAATCCTGGAGCTGAGTCGACTAGATAGGGCTCGTTGTATGCGCATATTGATGCGTAGTGTGGACGACATGAAAGCATTTTTAGACATCCCGGACGAGGTTAAGTTGGATTACTGCACGGCTATGAGATACATTCCCTATGCTTCAGCTGTAGGCAGTTTAATGTATGTAATGTTATGTACAGAGACATCTGTTATGCAGTAG

Protein sequence

MATSSRAPKYHWTKEEDSVLVECLMELVSSDGWRSDNETFRAGYHSHLHRMIVKRMPGHNITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKSFPHYDDLCYVFGRDRVTGGRAETFGDVGSNVPPGFEGFAHYDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPSSNGSKRKRGGQTLEAGKIIRSAMEYANDQLKAIVEWPKEQRQDASVTRAEVVRQLQGILELSRLDRARCMRILMRSVDDMKAFLDIPDEVKLDYCTAMRYIPYASAVGSLMYVMLCTETSVMQ

Homology

[Close]

BLAST of PI0000672 vs. ExPASy TrEMBL
Match: A0A5D3DPR5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00580 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 7.9e-103
Identity = 185/297 (62.29%), Postives = 230/297 (77.44%), Query Frame = 0


Query: 1   MATSSRAPKYHWTKEEDSVLVECLMELVSSDGWRSDNETFRAGYHSHLHRMIVKRMPGHN 60
           M +SSR PK+ WTKEE++ LVECL+ELV++ GWRSDN TFR GY + L RM+  ++PG N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  ITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGL 120
           I A+TID RIK MKR F A++EMRGP CSGFGWNDE KCI+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKSFPHYDDLCYVFGRDRVTGGRAETFGDVGSNVPPGFEGFAHYDGNDMENPTMYSQGL 180
           LNKSF HYD+L YVFG+DR TGGRAE+F D+GSN PPG++  A     D + P MYS GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPDDIMTPRSVRMSEARPSSNGSKRKRGGQTLEAGKIIRSAMEYANDQLKAIVEWPKE 240
           +MSPDD+M  R+ R+SE R  S+GSKRKR G   ++G I+R+A+EY N+QL  I EWP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 241 QRQDASVTRAEVVRQLQGILELSRLDRARCMRILMRSVDDMKAFLDIPDEVKLDYCT 298
           QRQDA+ TR E+VR L+ I EL+ +DR R MRILMR+VDDMKAFL++PD +K  YC+
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCS 295

[Close]

BLAST of PI0000672 vs. ExPASy TrEMBL
Match: A0A5A7UME4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00290 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 1.4e-102
Identity = 185/297 (62.29%), Postives = 230/297 (77.44%), Query Frame = 0


Query: 1   MATSSRAPKYHWTKEEDSVLVECLMELVSSDGWRSDNETFRAGYHSHLHRMIVKRMPGHN 60
           M +SSR PK+ WTKEE++ LVECL+ELV++ GWRSDN TFR GY + L RM+  ++PG N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  ITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGL 120
           I A+TID RIK MKR F A++EMRGP CSGFGWNDE KCI+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKSFPHYDDLCYVFGRDRVTGGRAETFGDVGSNVPPGFEGFAHYDGNDMENPTMYSQGL 180
           LNKSF HYD+L YVFG+DR TGGRAE+F D+GSN PPG++  A     D + P MYS GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAEAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPDDIMTPRSVRMSEARPSSNGSKRKRGGQTLEAGKIIRSAMEYANDQLKAIVEWPKE 240
           +MSPDD+M  R+ R+SE R  S+GSKRKR G   ++G I+R+A+EY N+QL  I EWP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 241 QRQDASVTRAEVVRQLQGILELSRLDRARCMRILMRSVDDMKAFLDIPDEVKLDYCT 298
           QRQDA+ TR E+VR L+ I EL+ +DR R MRILMR+VDDMKAFL++PD +K  YC+
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCS 295

[Close]

BLAST of PI0000672 vs. ExPASy TrEMBL
Match: A0A5D3CBF7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00350 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 1.4e-102
Identity = 185/297 (62.29%), Postives = 230/297 (77.44%), Query Frame = 0


Query: 1   MATSSRAPKYHWTKEEDSVLVECLMELVSSDGWRSDNETFRAGYHSHLHRMIVKRMPGHN 60
           M +SSR PK+ WTKEE++ LVECL+ELV++ GWRSDN TFR GY + L RM+  ++PG N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  ITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGL 120
           I A+TID RIK MKR F A++EMRGP CSGFGWNDE KCI+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKSFPHYDDLCYVFGRDRVTGGRAETFGDVGSNVPPGFEGFAHYDGNDMENPTMYSQGL 180
           LNKSF HYD+L YVFG+DR TGGRAE+F D+GSN PPG++  A     D + P MYS GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPDDIMTPRSVRMSEARPSSNGSKRKRGGQTLEAGKIIRSAMEYANDQLKAIVEWPKE 240
           +MSPDD+M  R+ R+SE R  S+GSKRKR G   ++G I+R+A+EY N+QL  I EWP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 241 QRQDASVTRAEVVRQLQGILELSRLDRARCMRILMRSVDDMKAFLDIPDEVKLDYCT 298
           QRQDA+ TR E+VR L+ I EL+ +DR R MRILMR+VDDMKAFL++PD +K  YC+
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCS 295

[Close]

BLAST of PI0000672 vs. ExPASy TrEMBL
Match: E5GCB5 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 1.4e-102
Identity = 185/297 (62.29%), Postives = 230/297 (77.44%), Query Frame = 0


Query: 1   MATSSRAPKYHWTKEEDSVLVECLMELVSSDGWRSDNETFRAGYHSHLHRMIVKRMPGHN 60
           M +SSR PK+ WTKEE++ LVECL+ELV++ GWRSDN TFR GY + L RM+  ++PG N
Sbjct: 356 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 415

Query: 61  ITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGL 120
           I A+TID RIK MKR F A++EMRGP CSGFGWNDE KCI+AEK++FD W  SHPAAKGL
Sbjct: 416 IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 475

Query: 121 LNKSFPHYDDLCYVFGRDRVTGGRAETFGDVGSNVPPGFEGFAHYDGNDMENPTMYSQGL 180
           LNKSF HYD+L YVFG+DR TGGRAE+F D+GSN PPG++  A     D + P MYS GL
Sbjct: 476 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 535

Query: 181 DMSPDDIMTPRSVRMSEARPSSNGSKRKRGGQTLEAGKIIRSAMEYANDQLKAIVEWPKE 240
           +MSPDD+M  R+ R+SE R  S+GSKRKR G   ++G I+R+A+EY N+QL  I EWP  
Sbjct: 536 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 595

Query: 241 QRQDASVTRAEVVRQLQGILELSRLDRARCMRILMRSVDDMKAFLDIPDEVKLDYCT 298
           QRQDA+ TR E+VR L+ I EL+ +DR R MRILMR+VDDMKAFL++PD +K  YC+
Sbjct: 596 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCS 650

[Close]

BLAST of PI0000672 vs. ExPASy TrEMBL
Match: A0A5A7VPS8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold485G00360 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 3.9e-102
Identity = 184/297 (61.95%), Postives = 230/297 (77.44%), Query Frame = 0


Query: 1   MATSSRAPKYHWTKEEDSVLVECLMELVSSDGWRSDNETFRAGYHSHLHRMIVKRMPGHN 60
           M +SSR PK+ WTKEE++ LVECL+ELV++ GWRSDN TFR GY + L RM+  ++PG N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNRTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  ITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGL 120
           I A+TID RIK MKR F A++EMRGP CSGFGWNDE KCI+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKSFPHYDDLCYVFGRDRVTGGRAETFGDVGSNVPPGFEGFAHYDGNDMENPTMYSQGL 180
           LNKSF HYD+L YV G+DR TGGRAE+F D+GSN PPG++  A     D + P MYS GL
Sbjct: 121 LNKSFVHYDELSYVSGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPDDIMTPRSVRMSEARPSSNGSKRKRGGQTLEAGKIIRSAMEYANDQLKAIVEWPKE 240
           +MSPDD+M  R+ R+SE+R  S+GSKRKR G   ++G I+R+A+EY N+QL  I EWP  
Sbjct: 181 NMSPDDLMETRTARVSESRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 241 QRQDASVTRAEVVRQLQGILELSRLDRARCMRILMRSVDDMKAFLDIPDEVKLDYCT 298
           QRQDA+ TR E+VR L+ I EL+ +DR R MRILMR+VDDMKAFL++PD +K  YC+
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCS 295

[Close]

BLAST of PI0000672 vs. NCBI nr
Match: KAA0035621.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046728.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0052099.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0054495.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 383.6 bits (984), Expect = 1.6e-102
Identity = 185/297 (62.29%), Postives = 230/297 (77.44%), Query Frame = 0


Query: 1   MATSSRAPKYHWTKEEDSVLVECLMELVSSDGWRSDNETFRAGYHSHLHRMIVKRMPGHN 60
           M +SSR PK+ WTKEE++ LVECL+ELV++ GWRSDN TFR GY + L RM+  ++PG N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  ITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGL 120
           I A+TID RIK MKR F A++EMRGP CSGFGWNDE KCI+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKSFPHYDDLCYVFGRDRVTGGRAETFGDVGSNVPPGFEGFAHYDGNDMENPTMYSQGL 180
           LNKSF HYD+L YVFG+DR TGGRAE+F D+GSN PPG++  A     D + P MYS GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPDDIMTPRSVRMSEARPSSNGSKRKRGGQTLEAGKIIRSAMEYANDQLKAIVEWPKE 240
           +MSPDD+M  R+ R+SE R  S+GSKRKR G   ++G I+R+A+EY N+QL  I EWP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 241 QRQDASVTRAEVVRQLQGILELSRLDRARCMRILMRSVDDMKAFLDIPDEVKLDYCT 298
           QRQDA+ TR E+VR L+ I EL+ +DR R MRILMR+VDDMKAFL++PD +K  YC+
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCS 295

[Close]

BLAST of PI0000672 vs. NCBI nr
Match: KAA0038122.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0047362.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0055248.1 retrotransposon protein [Cucumis melo var. makuwa] >TYJ97185.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK00369.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 382.9 bits (982), Expect = 2.8e-102
Identity = 185/297 (62.29%), Postives = 230/297 (77.44%), Query Frame = 0


Query: 1   MATSSRAPKYHWTKEEDSVLVECLMELVSSDGWRSDNETFRAGYHSHLHRMIVKRMPGHN 60
           M +SSR PK+ WTKEE++ LVECL+ELV++ GWRSDN TFR GY + L RM+  ++PG N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  ITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGL 120
           I A+TID RIK MKR F A++EMRGP CSGFGWNDE KCI+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKSFPHYDDLCYVFGRDRVTGGRAETFGDVGSNVPPGFEGFAHYDGNDMENPTMYSQGL 180
           LNKSF HYD+L YVFG+DR TGGRAE+F D+GSN PPG++  A     D + P MYS GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPDDIMTPRSVRMSEARPSSNGSKRKRGGQTLEAGKIIRSAMEYANDQLKAIVEWPKE 240
           +MSPDD+M  R+ R+SE R  S+GSKRKR G   ++G I+R+A+EY N+QL  I EWP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 241 QRQDASVTRAEVVRQLQGILELSRLDRARCMRILMRSVDDMKAFLDIPDEVKLDYCT 298
           QRQDA+ TR E+VR L+ I EL+ +DR R MRILMR+VDDMKAFL++PD +K  YC+
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCS 295

[Close]

BLAST of PI0000672 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 382.9 bits (982), Expect = 2.8e-102
Identity = 185/297 (62.29%), Postives = 230/297 (77.44%), Query Frame = 0


Query: 1   MATSSRAPKYHWTKEEDSVLVECLMELVSSDGWRSDNETFRAGYHSHLHRMIVKRMPGHN 60
           M +SSR PK+ WTKEE++ LVECL+ELV++ GWRSDN TFR GY + L RM+  ++PG N
Sbjct: 356 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 415

Query: 61  ITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGL 120
           I A+TID RIK MKR F A++EMRGP CSGFGWNDE KCI+AEK++FD W  SHPAAKGL
Sbjct: 416 IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 475

Query: 121 LNKSFPHYDDLCYVFGRDRVTGGRAETFGDVGSNVPPGFEGFAHYDGNDMENPTMYSQGL 180
           LNKSF HYD+L YVFG+DR TGGRAE+F D+GSN PPG++  A     D + P MYS GL
Sbjct: 476 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 535

Query: 181 DMSPDDIMTPRSVRMSEARPSSNGSKRKRGGQTLEAGKIIRSAMEYANDQLKAIVEWPKE 240
           +MSPDD+M  R+ R+SE R  S+GSKRKR G   ++G I+R+A+EY N+QL  I EWP  
Sbjct: 536 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 595

Query: 241 QRQDASVTRAEVVRQLQGILELSRLDRARCMRILMRSVDDMKAFLDIPDEVKLDYCT 298
           QRQDA+ TR E+VR L+ I EL+ +DR R MRILMR+VDDMKAFL++PD +K  YC+
Sbjct: 596 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCS 650

[Close]

BLAST of PI0000672 vs. NCBI nr
Match: KAA0057083.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK09001.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 382.9 bits (982), Expect = 2.8e-102
Identity = 185/297 (62.29%), Postives = 230/297 (77.44%), Query Frame = 0


Query: 1   MATSSRAPKYHWTKEEDSVLVECLMELVSSDGWRSDNETFRAGYHSHLHRMIVKRMPGHN 60
           M +SSR PK+ WTKEE++ LVECL+ELV++ GWRSDN TFR GY + L RM+  ++PG N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  ITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGL 120
           I A+TID RIK MKR F A++EMRGP CSGFGWNDE KCI+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKSFPHYDDLCYVFGRDRVTGGRAETFGDVGSNVPPGFEGFAHYDGNDMENPTMYSQGL 180
           LNKSF HYD+L YVFG+DR TGGRAE+F D+GSN PPG++  A     D + P MYS GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAEAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPDDIMTPRSVRMSEARPSSNGSKRKRGGQTLEAGKIIRSAMEYANDQLKAIVEWPKE 240
           +MSPDD+M  R+ R+SE R  S+GSKRKR G   ++G I+R+A+EY N+QL  I EWP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 241 QRQDASVTRAEVVRQLQGILELSRLDRARCMRILMRSVDDMKAFLDIPDEVKLDYCT 298
           QRQDA+ TR E+VR L+ I EL+ +DR R MRILMR+VDDMKAFL++PD +K  YC+
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCS 295

[Close]

BLAST of PI0000672 vs. NCBI nr
Match: KAA0067571.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 381.3 bits (978), Expect = 8.1e-102
Identity = 184/297 (61.95%), Postives = 230/297 (77.44%), Query Frame = 0


Query: 1   MATSSRAPKYHWTKEEDSVLVECLMELVSSDGWRSDNETFRAGYHSHLHRMIVKRMPGHN 60
           M +SSR PK+ WTKEE++ LVECL+ELV++ GWRSDN TFR GY + L RM+  ++PG N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNRTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  ITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGL 120
           I A+TID RIK MKR F A++EMRGP CSGFGWNDE KCI+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKSFPHYDDLCYVFGRDRVTGGRAETFGDVGSNVPPGFEGFAHYDGNDMENPTMYSQGL 180
           LNKSF HYD+L YV G+DR TGGRAE+F D+GSN PPG++  A     D + P MYS GL
Sbjct: 121 LNKSFVHYDELSYVSGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPDDIMTPRSVRMSEARPSSNGSKRKRGGQTLEAGKIIRSAMEYANDQLKAIVEWPKE 240
           +MSPDD+M  R+ R+SE+R  S+GSKRKR G   ++G I+R+A+EY N+QL  I EWP  
Sbjct: 181 NMSPDDLMETRTARVSESRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 241 QRQDASVTRAEVVRQLQGILELSRLDRARCMRILMRSVDDMKAFLDIPDEVKLDYCT 298
           QRQDA+ TR E+VR L+ I EL+ +DR R MRILMR+VDDMKAFL++PD +K  YC+
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCS 295

[Close]

BLAST of PI0000672 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 6.0e-10
Identity = 34/139 (24.46%), Postives = 69/139 (49.64%), Query Frame = 0


Query: 4   SSRAPKYHWTKEEDSVLVECLMELVSSDGWRSDNETFRAGYHSHLHRMIVKRMPGHNITA 63
           +S   +  WT   D  L++ L+E V ++G R       + ++  +     K    HN   
Sbjct: 319 NSDRTRIFWTPPMDYHLIDLLVEQV-NNGNRVGQTFITSAWNEMVTAFNAKFGSQHN--K 378

Query: 64  TTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNK 123
             +  R K ++R +  I  +     +GF W+     +IA+ D++++++++HP A+    K
Sbjct: 379 DVLKNRYKHLRRLYNDIKFLLEQ--NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVK 438

Query: 124 SFPHYDDLCYVFGRDRVTG 143
           + P Y +LC++FG++   G
Sbjct: 439 TIPSYPNLCFIFGKETSDG 452

[Close]

BLAST of PI0000672 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 58.9 bits (141), Expect = 8.6e-09
Identity = 36/146 (24.66%), Postives = 68/146 (46.58%), Query Frame = 0


Query: 12  WTKEEDSVLVECLME-----------LVSSDGWRSDNETFRAGYHSHLHRMIVKRMPGHN 71
           WT E D   +E ++E           L S   W+  + +F A +     + ++K      
Sbjct: 14  WTPEMDQYFIELMVEQVRKGNRFEDHLFSKRAWKFMSCSFTAKFKFLYGKDVLKN----- 73

Query: 72  ITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGL 131
                   R KT++  F++++ +      GF W+D  + ++A+  ++D ++K HP ++  
Sbjct: 74  --------RHKTLRNLFKSVNNLL--IEDGFSWDDTRQMVVADNCVWDEYLKIHPDSRSF 133

Query: 132 LNKSFPHYDDLCYVFGRDRVTGGRAE 147
             KS P Y DLC V+  D ++  +AE
Sbjct: 134 RIKSIPCYKDLCLVYS-DGMSEHKAE 143

[Close]

BLAST of PI0000672 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 58.9 bits (141), Expect = 8.6e-09
Identity = 36/146 (24.66%), Postives = 68/146 (46.58%), Query Frame = 0


Query: 12  WTKEEDSVLVECLME-----------LVSSDGWRSDNETFRAGYHSHLHRMIVKRMPGHN 71
           WT E D   +E ++E           L S   W+  + +F A +     + ++K      
Sbjct: 14  WTPEMDQYFIELMVEQVRKGNRFEDHLFSKRAWKFMSCSFTAKFKFLYGKDVLKN----- 73

Query: 72  ITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGL 131
                   R KT++  F++++ +      GF W+D  + ++A+  ++D ++K HP ++  
Sbjct: 74  --------RHKTLRNLFKSVNNLL--IEDGFSWDDTRQMVVADNCVWDEYLKIHPDSRSF 133

Query: 132 LNKSFPHYDDLCYVFGRDRVTGGRAE 147
             KS P Y DLC V+  D ++  +AE
Sbjct: 134 RIKSIPCYKDLCLVYS-DGMSEHKAE 143

[Close]

BLAST of PI0000672 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 1.5e-05
Identity = 32/143 (22.38%), Postives = 56/143 (39.16%), Query Frame = 0


Query: 3   TSSRAPKYHWTKEEDSVLVECLMELV----------SSDGWRSDNETFRAGYHSHLHRMI 62
           +   + K  WT E D   VE +++ +          S   W      F A +     + +
Sbjct: 163 SGKESSKTEWTLEMDQYFVEIMVDQIGRGNKTGNAFSKQAWIDMLVLFNARFSGQYGKRV 222

Query: 63  VKRMPGHNITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVK 122
           ++            +  +K  K     + E       GF W++    I A+  ++DS++K
Sbjct: 223 LRH---------RYNKLLKYYKDMEAILKE------DGFSWDETRLMISADDAVWDSYIK 282

Query: 123 SHPAAKGLLNKSFPHYDDLCYVF 136
            HP A+    KS P Y+DL  +F
Sbjct: 283 DHPLARTYRMKSLPSYNDLDTIF 290

The following BLAST results are available for this feature:

BLAST of PI0000672 vs.


Match Name	E-value	Identity	Description

BLAST of PI0000672 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DPR5	7.9e-103	62.29	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UME4	1.4e-102	62.29	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CBF7	1.4e-102	62.29	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GCB5	1.4e-102	62.29	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A5A7VPS8	3.9e-102	61.95	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0000672 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035621.1	1.6e-102	62.29	retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon...	[more]
KAA0038122.1	2.8e-102	62.29	retrotransposon protein [Cucumis melo var. makuwa] >KAA0047362.1 retrotransposon...	[more]
ADN34114.1	2.8e-102	62.29	retrotransposon protein [Cucumis melo subsp. melo]	[more]
KAA0057083.1	2.8e-102	62.29	retrotransposon protein [Cucumis melo var. makuwa] >TYK09001.1 retrotransposon p...	[more]
KAA0067571.1	8.1e-102	61.95	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0000672 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24960.2	6.0e-10	24.46	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G02210.1	8.6e-09	24.66	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	8.6e-09	24.66	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G24960.1	1.5e-05	22.38	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 11..106 e-value: 1.1E-8 score: 36.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..213
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..209
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 3..299

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0000672.1	PI0000672.1	mRNA