PI0000665 (gene) Melon (PI 482460) v1

Overview


Name	PI0000665
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	RNA-directed DNA polymerase-like protein
Location	chr10: 6209968 .. 6210192 (+)
RNA-Seq Expression	PI0000665
Synteny	PI0000665

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTATCCAAGTGGTTGATGAGGAAAGTCTGAAAGAACTAGTGTTGAAGGTAGTCCAGTATGTGTTAGATGAATACCAAGATGTAATTCTAGAGAGTTTGTCTAAGATTCTACCCCCACAAATGGGGATAGTTTATGAGATAGAACTCCTACCCAGGGCAAGACCCCTTGCAAAGAATGCGTATTGCATGGCGCCACCAAAATTTGCAGAACTTCAAAAATAG

mRNA sequence

ATGACTATCCAAGTGGTTGATGAGGAAAGTCTGAAAGAACTAGTGTTGAAGGTAGTCCAGTATGTGTTAGATGAATACCAAGATGTAATTCTAGAGAGTTTGTCTAAGATTCTACCCCCACAAATGGGGATAGTTTATGAGATAGAACTCCTACCCAGGGCAAGACCCCTTGCAAAGAATGCGTATTGCATGGCGCCACCAAAATTTGCAGAACTTCAAAAATAG

Coding sequence (CDS)

ATGACTATCCAAGTGGTTGATGAGGAAAGTCTGAAAGAACTAGTGTTGAAGGTAGTCCAGTATGTGTTAGATGAATACCAAGATGTAATTCTAGAGAGTTTGTCTAAGATTCTACCCCCACAAATGGGGATAGTTTATGAGATAGAACTCCTACCCAGGGCAAGACCCCTTGCAAAGAATGCGTATTGCATGGCGCCACCAAAATTTGCAGAACTTCAAAAATAG

Protein sequence

MTIQVVDEESLKELVLKVVQYVLDEYQDVILESLSKILPPQMGIVYEIELLPRARPLAKNAYCMAPPKFAELQK

Homology

[Close]

BLAST of PI0000665 vs. ExPASy TrEMBL
Match: A0A5A7SK59 (RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43876G00020 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.2e-15
Identity = 51/72 (70.83%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 1  MTIQVVDEESLKELVLKVVQYVLDEYQDVILESLSKILPPQMGIVYEIELLPRARPLAKN 60
          M I VVDEES KELV + VQYVLDEYQDV+ ESL K LPP  GI +EIELLP ARP AKN
Sbjct: 1  MAIPVVDEESPKELVPEAVQYVLDEYQDVMAESLPKTLPPLRGIDHEIELLPGARPPAKN 60

Query: 61 AYCMAPPKFAEL 73
          AY   PP+ AEL
Sbjct: 61 AYHTGPPELAEL 72

[Close]

BLAST of PI0000665 vs. ExPASy TrEMBL
Match: A0A5D3DWT3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001930 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.9e-13
Identity = 48/72 (66.67%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 1  MTIQVVDEESLKELVLKVVQYVLDEYQDVILESLSKILPPQMGIVYEIELLPRARPLAKN 60
          M I VVDEES KELV + VQYVLDEYQDV+ ESL K LPP  GI +EIELLP ARP  KN
Sbjct: 1  MAIPVVDEESPKELVPEAVQYVLDEYQDVMAESLPKTLPPLRGIDHEIELLPGARPPTKN 60

Query: 61 AYCMAPPKFAEL 73
           Y    P+ AEL
Sbjct: 61 VYHTGLPELAEL 72

[Close]

BLAST of PI0000665 vs. ExPASy TrEMBL
Match: A0A5D3C405 (RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001070 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.3e-12
Identity = 47/70 (67.14%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 1  MTIQVVDEESLKELVLKVVQYVLDEYQDVILESLSKILPPQMGIVYEIELLPRARPLAKN 60
          M I VV EES KELV +VVQYVLDEYQDV+ E+    LPP  GI +EIELLPRARP AKN
Sbjct: 1  MAIPVVIEESPKELVSEVVQYVLDEYQDVMAET----LPPPRGIDHEIELLPRARPPAKN 60

Query: 61 AYCMAPPKFA 71
           Y M PP++A
Sbjct: 61 VYHMGPPEWA 66

[Close]

BLAST of PI0000665 vs. ExPASy TrEMBL
Match: A0A5A7UBW9 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00450 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.2e-10
Identity = 41/74 (55.41%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 1   MTIQVVDEESLKELVLKVVQYVLDEYQDVILESLSKILPPQMGIVYEIELLPRARPLAKN 60
           M I +   E+  E VLK + +VL++Y+DV+L+S  K LPPQ  I +EIEL+P A+P AKN
Sbjct: 78  MAIPLNSLENSGETVLKDIMHVLEKYRDVMLDSFPKSLPPQRMIDHEIELVPGAKPPAKN 137

Query: 61  AYCMAPPKFAELQK 75
           AY MAPP+ AELQK
Sbjct: 138 AYRMAPPELAELQK 151

[Close]

BLAST of PI0000665 vs. ExPASy TrEMBL
Match: A0A6J1EWT2 (aspartic proteinase PCS1-like OS=Cucurbita moschata OX=3662 GN=LOC111438883 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.9e-10
Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 1  MTIQVVDEESLKELVLKVVQYVLDEYQDVILESLSKILPPQMGIVYEIELLPRARPLAKN 60
          M I +++E + +E V + ++ VLD Y D++ ESL + LPP+ GI +EIELLP  +P AKN
Sbjct: 1  MAIPLIEEATTEETVPEEIKEVLDSYTDIMPESLPQTLPPRRGIDHEIELLPGVKPPAKN 60

Query: 61 AYCMAPPKFAELQK 75
          AY MAPP+ AEL+K
Sbjct: 61 AYRMAPPELAELRK 74

[Close]

BLAST of PI0000665 vs. NCBI nr
Match: KAA0025512.1 (RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 6.5e-15
Identity = 51/72 (70.83%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 1  MTIQVVDEESLKELVLKVVQYVLDEYQDVILESLSKILPPQMGIVYEIELLPRARPLAKN 60
          M I VVDEES KELV + VQYVLDEYQDV+ ESL K LPP  GI +EIELLP ARP AKN
Sbjct: 1  MAIPVVDEESPKELVPEAVQYVLDEYQDVMAESLPKTLPPLRGIDHEIELLPGARPPAKN 60

Query: 61 AYCMAPPKFAEL 73
          AY   PP+ AEL
Sbjct: 61 AYHTGPPELAEL 72

[Close]

BLAST of PI0000665 vs. NCBI nr
Match: KAA0066834.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK27982.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 8.0e-13
Identity = 48/72 (66.67%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 1  MTIQVVDEESLKELVLKVVQYVLDEYQDVILESLSKILPPQMGIVYEIELLPRARPLAKN 60
          M I VVDEES KELV + VQYVLDEYQDV+ ESL K LPP  GI +EIELLP ARP  KN
Sbjct: 1  MAIPVVDEESPKELVPEAVQYVLDEYQDVMAESLPKTLPPLRGIDHEIELLPGARPPTKN 60

Query: 61 AYCMAPPKFAEL 73
           Y    P+ AEL
Sbjct: 61 VYHTGLPELAEL 72

[Close]

BLAST of PI0000665 vs. NCBI nr
Match: KAA0037019.1 (RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa] >TYK06631.1 RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 8.8e-12
Identity = 47/70 (67.14%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 1  MTIQVVDEESLKELVLKVVQYVLDEYQDVILESLSKILPPQMGIVYEIELLPRARPLAKN 60
          M I VV EES KELV +VVQYVLDEYQDV+ E+    LPP  GI +EIELLPRARP AKN
Sbjct: 1  MAIPVVIEESPKELVSEVVQYVLDEYQDVMAET----LPPPRGIDHEIELLPRARPPAKN 60

Query: 61 AYCMAPPKFA 71
           Y M PP++A
Sbjct: 61 VYHMGPPEWA 66

[Close]

BLAST of PI0000665 vs. NCBI nr
Match: XP_023550586.1 (uncharacterized protein LOC111808682 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 75.5 bits (184), Expect = 2.2e-10
Identity = 39/74 (52.70%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 1   MTIQVVDEESLKELVLKVVQYVLDEYQDVILESLSKILPPQMGIVYEIELLPRARPLAKN 60
           M I +++E + +E V + ++ VLD Y D++LESL + LPP+ GI +EIELLP  +P AKN
Sbjct: 143 MAIPLIEEATTEETVPEEIKEVLDSYTDIMLESLPQTLPPRRGIDHEIELLPGVKPPAKN 202

Query: 61  AYCMAPPKFAELQK 75
           AY MAPP+ AEL+K
Sbjct: 203 AYWMAPPELAELRK 216

[Close]

BLAST of PI0000665 vs. NCBI nr
Match: KAA0053383.1 (uncharacterized protein E6C27_scaffold428G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 41/74 (55.41%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 1   MTIQVVDEESLKELVLKVVQYVLDEYQDVILESLSKILPPQMGIVYEIELLPRARPLAKN 60
           M I +   E+  E VLK + +VL++Y+DV+L+S  K LPPQ  I +EIEL+P A+P AKN
Sbjct: 78  MAIPLNSLENSGETVLKDIMHVLEKYRDVMLDSFPKSLPPQRMIDHEIELVPGAKPPAKN 137

Query: 61  AYCMAPPKFAELQK 75
           AY MAPP+ AELQK
Sbjct: 138 AYRMAPPELAELQK 151

The following BLAST results are available for this feature:

BLAST of PI0000665 vs.


Match Name	E-value	Identity	Description

BLAST of PI0000665 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SK59	3.2e-15	70.83	RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3DWT3	3.9e-13	66.67	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]
A0A5D3C405	4.3e-12	67.14	RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7UBW9	5.2e-10	55.41	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A6J1EWT2	8.9e-10	51.35	aspartic proteinase PCS1-like OS=Cucurbita moschata OX=3662 GN=LOC111438883 PE=3...	[more]

BLAST of PI0000665 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025512.1	6.5e-15	70.83	RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]	[more]
KAA0066834.1	8.0e-13	66.67	reverse transcriptase [Cucumis melo var. makuwa] >TYK27982.1 reverse transcripta...	[more]
KAA0037019.1	8.8e-12	67.14	RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa] >TYK06631.1 ...	[more]
XP_023550586.1	2.2e-10	52.70	uncharacterized protein LOC111808682 [Cucurbita pepo subsp. pepo]	[more]
KAA0053383.1	1.1e-09	55.41	uncharacterized protein E6C27_scaffold428G00450 [Cucumis melo var. makuwa]	[more]

BLAST of PI0000665 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0000665.1	PI0000665.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0016798	hydrolase activity, acting on glycosyl bonds
molecular_function	GO:0008233	peptidase activity