PI0000539 (gene) Melon (PI 482460) v1

Overview
NamePI0000539
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Locationchr06: 10111943 .. 10112386 (+)
RNA-Seq ExpressionPI0000539
SyntenyPI0000539
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGCACAAAGTTATCCTGCAGCTAAGGGCTTCCTCAACAAAATGTTTCCTTATTATGATGACTTGTCCTATGTTTTTGGCAAAGGTCGGGCTATGGGAGCACGGCCAGAGACCTTCGCTGATGTAGGGTCTACTGTACCAGGCGGCTTCGATGGCTTTTCTGTTGATGATCTTCATGATCCAGAGATCTCGACGATGTATAGTCAGGGACTAGACATGTCACCTGATGAGCTTATGGGCACACGAGCAGGTCGATCTAGTGAAGACAGAATTCAAGTGGAAGCAAGAGGAAAACGCGGTGGTCATCTGTTTGAACCCGTTAAGGTCATTAGGAATGTAATGGAATTTGCAAATGACCAGTTGAAGGCGATTGCAGATTGGCAAAAAGAGAAACGTGCAACAGAGGTCGAGCTACATGGGGAAGTCATGAAACACTTGTAA

mRNA sequence

ATGTTTGCACAAAGTTATCCTGCAGCTAAGGGCTTCCTCAACAAAATGTTTCCTTATTATGATGACTTGTCCTATGTTTTTGGCAAAGGTCGGGCTATGGGAGCACGGCCAGAGACCTTCGCTGATGTAGGGTCTACTGTACCAGGCGGCTTCGATGGCTTTTCTGTTGATGATCTTCATGATCCAGAGATCTCGACGATGTATAGTCAGGGACTAGACATGTCACCTGATGAGCTTATGGGCACACGAGCAGGTCGATCTAGTGAAGACAGAATTCAAGTGGAAGCAAGAGGAAAACGCGGTGGTCATCTGTTTGAACCCGTTAAGGTCATTAGGAATGTAATGGAATTTGCAAATGACCAGTTGAAGGCGATTGCAGATTGGCAAAAAGAGAAACGTGCAACAGAGGTCGAGCTACATGGGGAAGTCATGAAACACTTGTAA

Coding sequence (CDS)

ATGTTTGCACAAAGTTATCCTGCAGCTAAGGGCTTCCTCAACAAAATGTTTCCTTATTATGATGACTTGTCCTATGTTTTTGGCAAAGGTCGGGCTATGGGAGCACGGCCAGAGACCTTCGCTGATGTAGGGTCTACTGTACCAGGCGGCTTCGATGGCTTTTCTGTTGATGATCTTCATGATCCAGAGATCTCGACGATGTATAGTCAGGGACTAGACATGTCACCTGATGAGCTTATGGGCACACGAGCAGGTCGATCTAGTGAAGACAGAATTCAAGTGGAAGCAAGAGGAAAACGCGGTGGTCATCTGTTTGAACCCGTTAAGGTCATTAGGAATGTAATGGAATTTGCAAATGACCAGTTGAAGGCGATTGCAGATTGGCAAAAAGAGAAACGTGCAACAGAGGTCGAGCTACATGGGGAAGTCATGAAACACTTGTAA

Protein sequence

MFAQSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGFDGFSVDDLHDPEISTMYSQGLDMSPDELMGTRAGRSSEDRIQVEARGKRGGHLFEPVKVIRNVMEFANDQLKAIADWQKEKRATEVELHGEVMKHL
Homology
BLAST of PI0000539 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 8.2e-39
Identity = 89/146 (60.96%), Postives = 108/146 (73.97%), Query Frame = 0

Query: 4   QSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDP 63
           +S+PAAKG L+K FPYYDDLSYVFGK RA GAR ETF +VGS V   F D   + D HD 
Sbjct: 113 KSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDE 172

Query: 64  EISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGGHLFEPVKVIRNVMEFANDQ 123
           +I TMYSQG+ MSPDE+ G RAG++SE R     ++ KRG   +E V+VIR+VMEF N+Q
Sbjct: 173 DIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQ 232

Query: 124 LKAIADWQKEKRATEVELHGEVMKHL 148
           LKAIADW KEKRA EVE+  +V+K L
Sbjct: 233 LKAIADWPKEKRAMEVEMRAQVVKQL 258

BLAST of PI0000539 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 8.2e-39
Identity = 89/146 (60.96%), Postives = 108/146 (73.97%), Query Frame = 0

Query: 4   QSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDP 63
           +S+PAAKG L+K FPYYDDLSYVFGK RA GAR ETF +VGS V   F D   + D HD 
Sbjct: 113 KSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDE 172

Query: 64  EISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGGHLFEPVKVIRNVMEFANDQ 123
           +I TMYSQG+ MSPDE+ G RAG++SE R     ++ KRG   +E V+VIR+VMEF N+Q
Sbjct: 173 DIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQ 232

Query: 124 LKAIADWQKEKRATEVELHGEVMKHL 148
           LKAIADW KEKRA EVE+  +V+K L
Sbjct: 233 LKAIADWPKEKRAMEVEMRAQVVKQL 258

BLAST of PI0000539 vs. ExPASy TrEMBL
Match: A0A5D3CVB7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00360 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.9e-36
Identity = 85/146 (58.22%), Postives = 105/146 (71.92%), Query Frame = 0

Query: 4   QSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDP 63
           +S+P  KG LNK FPYYDD+SYVFGK +A  AR ETFADVGS +P  F DG  + D H  
Sbjct: 12  ESHPTVKGLLNKSFPYYDDVSYVFGKDQATEARSETFADVGSNIPNMFNDGVPLGDSHHE 71

Query: 64  EISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGGHLFEPVKVIRNVMEFANDQ 123
           +I TMYSQG+ MS DE+ GTRAG++SE R     ++ K+G   +E V+VIR+ M+F NDQ
Sbjct: 72  DIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQ 131

Query: 124 LKAIADWQKEKRATEVELHGEVMKHL 148
           LKAIADW KEKRA +VEL   V+K L
Sbjct: 132 LKAIADWLKEKRAMKVELRALVVKQL 157

BLAST of PI0000539 vs. ExPASy TrEMBL
Match: A0A5A7SQU2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00070 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 6.5e-36
Identity = 85/142 (59.86%), Postives = 103/142 (72.54%), Query Frame = 0

Query: 8   AAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGFDG-FSVDDLHDPEIST 67
           A K  L+K FPYYDDL YVFGK RA  AR ETFADVGS VP  F+G   +DD HD +I  
Sbjct: 310 APKDLLHKSFPYYDDLFYVFGKDRATRARSETFADVGSNVPNMFNGDVPLDDSHDQDIPM 369

Query: 68  MYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGGHLFEPVKVIRNVMEFANDQLKAI 127
           MYSQG+ MSPDE+ G RAG++SE +     ++ K+G   +E V+VI++ +EF NDQLKAI
Sbjct: 370 MYSQGVHMSPDEMFGIRAGQASERKNCSSGSKRKQGSKHYETVEVIKSAIEFGNDQLKAI 429

Query: 128 ADWQKEKRATEVELHGEVMKHL 148
           A+W KEKRATEVEL  EVMK L
Sbjct: 430 ANWPKEKRATEVELRAEVMKQL 451

BLAST of PI0000539 vs. ExPASy TrEMBL
Match: A0A5A7USN6 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00100 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 4.2e-35
Identity = 85/143 (59.44%), Postives = 104/143 (72.73%), Query Frame = 0

Query: 5   SYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDPE 64
           S+PAAKG L+K FPYYDDLSYVFGK RA   R ETF+ VGS VP  F DG  + D H+ +
Sbjct: 169 SHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPLGDSHNQD 228

Query: 65  ISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGGHLFEPVKVIRNVMEFANDQL 124
           I  MYSQG+ MS DE+ G RAG++SE R     ++ KRG   +E V+VIR+VM+F N+QL
Sbjct: 229 IPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRGSKHYEMVEVIRSVMKFGNNQL 288

Query: 125 KAIADWQKEKRATEVELHGEVMK 146
           K IADW K+KRATEVEL  EV+K
Sbjct: 289 KTIADWPKKKRATEVELCAEVVK 311

BLAST of PI0000539 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 169.9 bits (429), Expect = 1.7e-38
Identity = 89/146 (60.96%), Postives = 108/146 (73.97%), Query Frame = 0

Query: 4   QSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDP 63
           +S+PAAKG L+K FPYYDDLSYVFGK RA GAR ETF +VGS V   F D   + D HD 
Sbjct: 113 KSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDE 172

Query: 64  EISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGGHLFEPVKVIRNVMEFANDQ 123
           +I TMYSQG+ MSPDE+ G RAG++SE R     ++ KRG   +E V+VIR+VMEF N+Q
Sbjct: 173 DIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQ 232

Query: 124 LKAIADWQKEKRATEVELHGEVMKHL 148
           LKAIADW KEKRA EVE+  +V+K L
Sbjct: 233 LKAIADWPKEKRAMEVEMRAQVVKQL 258

BLAST of PI0000539 vs. NCBI nr
Match: KAA0042340.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 6.0e-36
Identity = 85/146 (58.22%), Postives = 105/146 (71.92%), Query Frame = 0

Query: 4   QSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDP 63
           +S+P  KG LNK FPYYDD+SYVFGK +A  AR ETFADVGS +P  F DG  + D H  
Sbjct: 12  ESHPTVKGLLNKSFPYYDDVSYVFGKDQATEARSETFADVGSNIPNMFNDGVPLGDSHHE 71

Query: 64  EISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGGHLFEPVKVIRNVMEFANDQ 123
           +I TMYSQG+ MS DE+ GTRAG++SE R     ++ K+G   +E V+VIR+ M+F NDQ
Sbjct: 72  DIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQ 131

Query: 124 LKAIADWQKEKRATEVELHGEVMKHL 148
           LKAIADW KEKRA +VEL   V+K L
Sbjct: 132 LKAIADWLKEKRAMKVELRALVVKQL 157

BLAST of PI0000539 vs. NCBI nr
Match: KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 160.2 bits (404), Expect = 1.3e-35
Identity = 85/142 (59.86%), Postives = 103/142 (72.54%), Query Frame = 0

Query: 8   AAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGFDG-FSVDDLHDPEIST 67
           A K  L+K FPYYDDL YVFGK RA  AR ETFADVGS VP  F+G   +DD HD +I  
Sbjct: 310 APKDLLHKSFPYYDDLFYVFGKDRATRARSETFADVGSNVPNMFNGDVPLDDSHDQDIPM 369

Query: 68  MYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGGHLFEPVKVIRNVMEFANDQLKAI 127
           MYSQG+ MSPDE+ G RAG++SE +     ++ K+G   +E V+VI++ +EF NDQLKAI
Sbjct: 370 MYSQGVHMSPDEMFGIRAGQASERKNCSSGSKRKQGSKHYETVEVIKSAIEFGNDQLKAI 429

Query: 128 ADWQKEKRATEVELHGEVMKHL 148
           A+W KEKRATEVEL  EVMK L
Sbjct: 430 ANWPKEKRATEVELRAEVMKQL 451

BLAST of PI0000539 vs. NCBI nr
Match: KAA0056515.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK12085.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 157.5 bits (397), Expect = 8.6e-35
Identity = 85/143 (59.44%), Postives = 104/143 (72.73%), Query Frame = 0

Query: 5   SYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDPE 64
           S+PAAKG L+K FPYYDDLSYVFGK RA   R ETF+ VGS VP  F DG  + D H+ +
Sbjct: 169 SHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPLGDSHNQD 228

Query: 65  ISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGGHLFEPVKVIRNVMEFANDQL 124
           I  MYSQG+ MS DE+ G RAG++SE R     ++ KRG   +E V+VIR+VM+F N+QL
Sbjct: 229 IPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRGSKHYEMVEVIRSVMKFGNNQL 288

Query: 125 KAIADWQKEKRATEVELHGEVMK 146
           K IADW K+KRATEVEL  EV+K
Sbjct: 289 KTIADWPKKKRATEVELCAEVVK 311

BLAST of PI0000539 vs. NCBI nr
Match: KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 9.6e-34
Identity = 84/146 (57.53%), Postives = 101/146 (69.18%), Query Frame = 0

Query: 4   QSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDP 63
           +S+PAAKG L+K FPYYDDLSYVFG   A GA  ETFAD GS V   F DG  + D H+ 
Sbjct: 70  RSHPAAKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQ 129

Query: 64  EISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGGHLFEPVKVIRNVMEFANDQ 123
           +I T+YSQG+ MS DE+ G RAG++SE R     ++ KRG   +E V+VI +  EF NDQ
Sbjct: 130 DILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATEFGNDQ 189

Query: 124 LKAIADWQKEKRATEVELHGEVMKHL 148
           LK I DW KEKRATEVEL  EV+K L
Sbjct: 190 LKTITDWPKEKRATEVELRTEVVKQL 215

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U0H78.2e-3960.96Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B4L38.2e-3960.96uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
A0A5D3CVB72.9e-3658.22Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SQU26.5e-3659.86Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7USN64.2e-3559.44Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
Match NameE-valueIdentityDescription
XP_008441954.11.7e-3860.96PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... [more]
KAA0042340.16.0e-3658.22retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon p... [more]
KAA0033290.11.3e-3559.86putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas... [more]
KAA0056515.18.6e-3559.44putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK12085.1 putative nucleas... [more]
KAA0031678.19.6e-3457.53retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0000539.1PI0000539.1mRNA