Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGCACAAAGTTATCCTGCAGCTAAGGGCTTCCTCAACAAAATGTTTCCTTATTATGATGACTTGTCCTATGTTTTTGGCAAAGGTCGGGCTATGGGAGCACGGCCAGAGACCTTCGCTGATGTAGGGTCTACTGTACCAGGCGGCTTCGATGGCTTTTCTGTTGATGATCTTCATGATCCAGAGATCTCGACGATGTATAGTCAGGGACTAGACATGTCACCTGATGAGCTTATGGGCACACGAGCAGGTCGATCTAGTGAAGACAGAATTCAAGTGGAAGCAAGAGGAAAACGCGGTGGTCATCTGTTTGAACCCGTTAAGGTCATTAGGAATGTAATGGAATTTGCAAATGACCAGTTGAAGGCGATTGCAGATTGGCAAAAAGAGAAACGTGCAACAGAGGTCGAGCTACATGGGGAAGTCATGAAACACTTGTAA
mRNA sequence
ATGTTTGCACAAAGTTATCCTGCAGCTAAGGGCTTCCTCAACAAAATGTTTCCTTATTATGATGACTTGTCCTATGTTTTTGGCAAAGGTCGGGCTATGGGAGCACGGCCAGAGACCTTCGCTGATGTAGGGTCTACTGTACCAGGCGGCTTCGATGGCTTTTCTGTTGATGATCTTCATGATCCAGAGATCTCGACGATGTATAGTCAGGGACTAGACATGTCACCTGATGAGCTTATGGGCACACGAGCAGGTCGATCTAGTGAAGACAGAATTCAAGTGGAAGCAAGAGGAAAACGCGGTGGTCATCTGTTTGAACCCGTTAAGGTCATTAGGAATGTAATGGAATTTGCAAATGACCAGTTGAAGGCGATTGCAGATTGGCAAAAAGAGAAACGTGCAACAGAGGTCGAGCTACATGGGGAAGTCATGAAACACTTGTAA
Coding sequence (CDS)
ATGTTTGCACAAAGTTATCCTGCAGCTAAGGGCTTCCTCAACAAAATGTTTCCTTATTATGATGACTTGTCCTATGTTTTTGGCAAAGGTCGGGCTATGGGAGCACGGCCAGAGACCTTCGCTGATGTAGGGTCTACTGTACCAGGCGGCTTCGATGGCTTTTCTGTTGATGATCTTCATGATCCAGAGATCTCGACGATGTATAGTCAGGGACTAGACATGTCACCTGATGAGCTTATGGGCACACGAGCAGGTCGATCTAGTGAAGACAGAATTCAAGTGGAAGCAAGAGGAAAACGCGGTGGTCATCTGTTTGAACCCGTTAAGGTCATTAGGAATGTAATGGAATTTGCAAATGACCAGTTGAAGGCGATTGCAGATTGGCAAAAAGAGAAACGTGCAACAGAGGTCGAGCTACATGGGGAAGTCATGAAACACTTGTAA
Protein sequence
MFAQSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGFDGFSVDDLHDPEISTMYSQGLDMSPDELMGTRAGRSSEDRIQVEARGKRGGHLFEPVKVIRNVMEFANDQLKAIADWQKEKRATEVELHGEVMKHL
Homology
BLAST of PI0000539 vs. ExPASy TrEMBL
Match:
A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)
HSP 1 Score: 169.9 bits (429), Expect = 8.2e-39
Identity = 89/146 (60.96%), Postives = 108/146 (73.97%), Query Frame = 0
Query: 4 QSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDP 63
+S+PAAKG L+K FPYYDDLSYVFGK RA GAR ETF +VGS V F D + D HD
Sbjct: 113 KSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDE 172
Query: 64 EISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGGHLFEPVKVIRNVMEFANDQ 123
+I TMYSQG+ MSPDE+ G RAG++SE R ++ KRG +E V+VIR+VMEF N+Q
Sbjct: 173 DIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQ 232
Query: 124 LKAIADWQKEKRATEVELHGEVMKHL 148
LKAIADW KEKRA EVE+ +V+K L
Sbjct: 233 LKAIADWPKEKRAMEVEMRAQVVKQL 258
BLAST of PI0000539 vs. ExPASy TrEMBL
Match:
A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)
HSP 1 Score: 169.9 bits (429), Expect = 8.2e-39
Identity = 89/146 (60.96%), Postives = 108/146 (73.97%), Query Frame = 0
Query: 4 QSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDP 63
+S+PAAKG L+K FPYYDDLSYVFGK RA GAR ETF +VGS V F D + D HD
Sbjct: 113 KSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDE 172
Query: 64 EISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGGHLFEPVKVIRNVMEFANDQ 123
+I TMYSQG+ MSPDE+ G RAG++SE R ++ KRG +E V+VIR+VMEF N+Q
Sbjct: 173 DIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQ 232
Query: 124 LKAIADWQKEKRATEVELHGEVMKHL 148
LKAIADW KEKRA EVE+ +V+K L
Sbjct: 233 LKAIADWPKEKRAMEVEMRAQVVKQL 258
BLAST of PI0000539 vs. ExPASy TrEMBL
Match:
A0A5D3CVB7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00360 PE=4 SV=1)
HSP 1 Score: 161.4 bits (407), Expect = 2.9e-36
Identity = 85/146 (58.22%), Postives = 105/146 (71.92%), Query Frame = 0
Query: 4 QSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDP 63
+S+P KG LNK FPYYDD+SYVFGK +A AR ETFADVGS +P F DG + D H
Sbjct: 12 ESHPTVKGLLNKSFPYYDDVSYVFGKDQATEARSETFADVGSNIPNMFNDGVPLGDSHHE 71
Query: 64 EISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGGHLFEPVKVIRNVMEFANDQ 123
+I TMYSQG+ MS DE+ GTRAG++SE R ++ K+G +E V+VIR+ M+F NDQ
Sbjct: 72 DIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQ 131
Query: 124 LKAIADWQKEKRATEVELHGEVMKHL 148
LKAIADW KEKRA +VEL V+K L
Sbjct: 132 LKAIADWLKEKRAMKVELRALVVKQL 157
BLAST of PI0000539 vs. ExPASy TrEMBL
Match:
A0A5A7SQU2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00070 PE=3 SV=1)
HSP 1 Score: 160.2 bits (404), Expect = 6.5e-36
Identity = 85/142 (59.86%), Postives = 103/142 (72.54%), Query Frame = 0
Query: 8 AAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGFDG-FSVDDLHDPEIST 67
A K L+K FPYYDDL YVFGK RA AR ETFADVGS VP F+G +DD HD +I
Sbjct: 310 APKDLLHKSFPYYDDLFYVFGKDRATRARSETFADVGSNVPNMFNGDVPLDDSHDQDIPM 369
Query: 68 MYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGGHLFEPVKVIRNVMEFANDQLKAI 127
MYSQG+ MSPDE+ G RAG++SE + ++ K+G +E V+VI++ +EF NDQLKAI
Sbjct: 370 MYSQGVHMSPDEMFGIRAGQASERKNCSSGSKRKQGSKHYETVEVIKSAIEFGNDQLKAI 429
Query: 128 ADWQKEKRATEVELHGEVMKHL 148
A+W KEKRATEVEL EVMK L
Sbjct: 430 ANWPKEKRATEVELRAEVMKQL 451
BLAST of PI0000539 vs. ExPASy TrEMBL
Match:
A0A5A7USN6 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00100 PE=3 SV=1)
HSP 1 Score: 157.5 bits (397), Expect = 4.2e-35
Identity = 85/143 (59.44%), Postives = 104/143 (72.73%), Query Frame = 0
Query: 5 SYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDPE 64
S+PAAKG L+K FPYYDDLSYVFGK RA R ETF+ VGS VP F DG + D H+ +
Sbjct: 169 SHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPLGDSHNQD 228
Query: 65 ISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGGHLFEPVKVIRNVMEFANDQL 124
I MYSQG+ MS DE+ G RAG++SE R ++ KRG +E V+VIR+VM+F N+QL
Sbjct: 229 IPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRGSKHYEMVEVIRSVMKFGNNQL 288
Query: 125 KAIADWQKEKRATEVELHGEVMK 146
K IADW K+KRATEVEL EV+K
Sbjct: 289 KTIADWPKKKRATEVELCAEVVK 311
BLAST of PI0000539 vs. NCBI nr
Match:
XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 169.9 bits (429), Expect = 1.7e-38
Identity = 89/146 (60.96%), Postives = 108/146 (73.97%), Query Frame = 0
Query: 4 QSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDP 63
+S+PAAKG L+K FPYYDDLSYVFGK RA GAR ETF +VGS V F D + D HD
Sbjct: 113 KSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDE 172
Query: 64 EISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGGHLFEPVKVIRNVMEFANDQ 123
+I TMYSQG+ MSPDE+ G RAG++SE R ++ KRG +E V+VIR+VMEF N+Q
Sbjct: 173 DIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQ 232
Query: 124 LKAIADWQKEKRATEVELHGEVMKHL 148
LKAIADW KEKRA EVE+ +V+K L
Sbjct: 233 LKAIADWPKEKRAMEVEMRAQVVKQL 258
BLAST of PI0000539 vs. NCBI nr
Match:
KAA0042340.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 161.4 bits (407), Expect = 6.0e-36
Identity = 85/146 (58.22%), Postives = 105/146 (71.92%), Query Frame = 0
Query: 4 QSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDP 63
+S+P KG LNK FPYYDD+SYVFGK +A AR ETFADVGS +P F DG + D H
Sbjct: 12 ESHPTVKGLLNKSFPYYDDVSYVFGKDQATEARSETFADVGSNIPNMFNDGVPLGDSHHE 71
Query: 64 EISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGGHLFEPVKVIRNVMEFANDQ 123
+I TMYSQG+ MS DE+ GTRAG++SE R ++ K+G +E V+VIR+ M+F NDQ
Sbjct: 72 DIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQ 131
Query: 124 LKAIADWQKEKRATEVELHGEVMKHL 148
LKAIADW KEKRA +VEL V+K L
Sbjct: 132 LKAIADWLKEKRAMKVELRALVVKQL 157
BLAST of PI0000539 vs. NCBI nr
Match:
KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])
HSP 1 Score: 160.2 bits (404), Expect = 1.3e-35
Identity = 85/142 (59.86%), Postives = 103/142 (72.54%), Query Frame = 0
Query: 8 AAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGFDG-FSVDDLHDPEIST 67
A K L+K FPYYDDL YVFGK RA AR ETFADVGS VP F+G +DD HD +I
Sbjct: 310 APKDLLHKSFPYYDDLFYVFGKDRATRARSETFADVGSNVPNMFNGDVPLDDSHDQDIPM 369
Query: 68 MYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGGHLFEPVKVIRNVMEFANDQLKAI 127
MYSQG+ MSPDE+ G RAG++SE + ++ K+G +E V+VI++ +EF NDQLKAI
Sbjct: 370 MYSQGVHMSPDEMFGIRAGQASERKNCSSGSKRKQGSKHYETVEVIKSAIEFGNDQLKAI 429
Query: 128 ADWQKEKRATEVELHGEVMKHL 148
A+W KEKRATEVEL EVMK L
Sbjct: 430 ANWPKEKRATEVELRAEVMKQL 451
BLAST of PI0000539 vs. NCBI nr
Match:
KAA0056515.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK12085.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])
HSP 1 Score: 157.5 bits (397), Expect = 8.6e-35
Identity = 85/143 (59.44%), Postives = 104/143 (72.73%), Query Frame = 0
Query: 5 SYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDPE 64
S+PAAKG L+K FPYYDDLSYVFGK RA R ETF+ VGS VP F DG + D H+ +
Sbjct: 169 SHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPLGDSHNQD 228
Query: 65 ISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGGHLFEPVKVIRNVMEFANDQL 124
I MYSQG+ MS DE+ G RAG++SE R ++ KRG +E V+VIR+VM+F N+QL
Sbjct: 229 IPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRGSKHYEMVEVIRSVMKFGNNQL 288
Query: 125 KAIADWQKEKRATEVELHGEVMK 146
K IADW K+KRATEVEL EV+K
Sbjct: 289 KTIADWPKKKRATEVELCAEVVK 311
BLAST of PI0000539 vs. NCBI nr
Match:
KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 154.1 bits (388), Expect = 9.6e-34
Identity = 84/146 (57.53%), Postives = 101/146 (69.18%), Query Frame = 0
Query: 4 QSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDP 63
+S+PAAKG L+K FPYYDDLSYVFG A GA ETFAD GS V F DG + D H+
Sbjct: 70 RSHPAAKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQ 129
Query: 64 EISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGGHLFEPVKVIRNVMEFANDQ 123
+I T+YSQG+ MS DE+ G RAG++SE R ++ KRG +E V+VI + EF NDQ
Sbjct: 130 DILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATEFGNDQ 189
Query: 124 LKAIADWQKEKRATEVELHGEVMKHL 148
LK I DW KEKRATEVEL EV+K L
Sbjct: 190 LKTITDWPKEKRATEVELRTEVVKQL 215
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7U0H7 | 8.2e-39 | 60.96 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3B4L3 | 8.2e-39 | 60.96 | uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... | [more] |
A0A5D3CVB7 | 2.9e-36 | 58.22 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7SQU2 | 6.5e-36 | 59.86 | Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... | [more] |
A0A5A7USN6 | 4.2e-35 | 59.44 | Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... | [more] |
Match Name | E-value | Identity | Description | |
XP_008441954.1 | 1.7e-38 | 60.96 | PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... | [more] |
KAA0042340.1 | 6.0e-36 | 58.22 | retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon p... | [more] |
KAA0033290.1 | 1.3e-35 | 59.86 | putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas... | [more] |
KAA0056515.1 | 8.6e-35 | 59.44 | putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK12085.1 putative nucleas... | [more] |
KAA0031678.1 | 9.6e-34 | 57.53 | retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p... | [more] |
Match Name | E-value | Identity | Description | |