PI0000536 (gene) Melon (PI 482460) v1

Overview


Name	PI0000536
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr02: 20107004 .. 20108482 (+)
RNA-Seq Expression	PI0000536
Synteny	PI0000536

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCGTTCTTCCAACCAAGAACTCTTTTTCTCTGAAGACCTTAATAGGGAAATACGTAGGATTAGGAGAGAAAGGAGAGAAGAAACCATTAACAATATCCCTCAAGATCCAATAGACAACCAAGAGCCTTATCTAGAAAACTCAAACCTTGATAGACAAAATATGGGTCAAGTTAGAAAGAAAACCTTAAGAGAGCTTTCCGAGCCTGACGAGGACCAAAGGCCCCTCTGTATTGTAATTCCCCCAACCACTCAACCCTTCAAACTCAAAGCTGGACTTATCCATCTCTTACCTATATACAAGGGTAGTTCAGGAGAGGACCCCCATAAATACCTCAAAGACTTTCATATGGTTTGTGACTCAATGAGACCGCACGGAGTTTTAGAGGAACAACTTAACCTGAGAGCCTTTTCATTTTCTTTGACTGACACAGCCAAAAGATGGCTTTACTATCTTGAGCCAGGGTCCATCACCACTTGGGGAAGCCTTAAAAAGAAATTTTTAGAAAAGTTCTTTCCAGCCTCAAGAGCCAATAATATTAGGAAAGAAATCTATGGAATAAGGCAAGCTTTTGGGGAGTCCTTGTCTGAATACTGGGAAAGGTTTAAGGAGCTCTGCGCTAGTTTCCCCCATCACCATATTTCTGATCTATCACTAATACAATATTTCTATTTTGGACTACTAACCATGGATAGAAATACAGTAGACGCTGCAGCAGGTGGTGCTTTGGCTGACAAAACCCCTACTGAAGCTAGAGAGCTCATTTCAAGGATGGCAGAAAATTCACAGAATTTTGGAAACAGGGCATCCGAGCTCGACAATTCATTGACAAAGGAGGTAAGTGAACTCAAATCACAAATGCTTATATGACTACTTTACTAACTTCCTTTGTACAAGGTGGATCCGTTAAAGTTGCTAAGTGTGGGGTATGCGGTCTAGTTGGACATCCTAATGACAAGTATCCTGACTTAGTGGAAGACGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACATACAATGCCGGTTGGAGAGACAACTCTAATCTAAGATGGGAAACGACAACCAAAGACCCTCGCAAGCAACCTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATAGTATCTCTTTTCAGAATGAAATGAAACAACAAATGTCTCATCTAACAAATGCCATAAGCAAACTAGAAGGTAAAGGTAAACTTCCGGCTCAGCCAGATCATGCCAACGTAAGTGTCATCTCGTTTAGAAGTGGTAAGATTCTGGAAACCCCTTCAAGTGAAGAAAAGGTAACTTCTACCCCTATCTTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAACTAGAAACAAATACTTTACCATCTTCTTCTAAAGGTAAATCTCACATTTTAGATTATTCTCCTTTCGTCCCTAAAGCTCATTTTCCTTCCAGGTTAGCTCCTAA

mRNA sequence

ATGACCCGTTCTTCCAACCAAGAACTCTTTTTCTCTGAAGACCTTAATAGGGAAATACGTAGGATTAGGAGAGAAAGGAGAGAAGAAACCATTAACAATATCCCTCAAGATCCAATAGACAACCAAGAGCCTTATCTAGAAAACTCAAACCTTGATAGACAAAATATGGGTCAAGTTAGAAAGAAAACCTTAAGAGAGCTTTCCGAGCCTGACGAGGACCAAAGGCCCCTCTGTATTGTAATTCCCCCAACCACTCAACCCTTCAAACTCAAAGCTGGACTTATCCATCTCTTACCTATATACAAGGGTAGTTCAGGAGAGGACCCCCATAAATACCTCAAAGACTTTCATATGGTTTGTGACTCAATGAGACCGCACGGAGTTTTAGAGGAACAACTTAACCTGAGAGCCTTTTCATTTTCTTTGACTGACACAGCCAAAAGATGGCTTTACTATCTTGAGCCAGGGTCCATCACCACTTGGGGAAGCCTTAAAAAGAAATTTTTAGAAAAGTTCTTTCCAGCCTCAAGAGCCAATAATATTAGGAAAGAAATCTATGGAATAAGGCAAGCTTTTGGGGAGTCCTTGTCTGAATACTGGGAAAGGTTTAAGGAGCTCTGCGCTAGTTTCCCCCATCACCATATTTCTGATCTATCACTAATACAATATTTCTATTTTGGACTACTAACCATGGATAGAAATACAGTAGACGCTGCAGCAGGTGGTGCTTTGGCTGACAAAACCCCTACTGAAGCTAGAGAGCTCATTTCAAGGATGGCAGAAAATTCACAGAATTTTGGAAACAGGGCATCCGAGCTCGACAATTCATTGACAAAGGAGTGTGGGGTATGCGGTCTAGTTGGACATCCTAATGACAAGTATCCTGACTTAGTGGAAGACGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACATACAATGCCGGTTGGAGAGACAACTCTAATCTAAGATGGGAAACGACAACCAAAGACCCTCGCAAGCAACCTCCTCTTCAAACAATCAAGAATGAAATGAAACAACAAATGTCTCATCTAACAAATGCCATAAGCAAACTAGAAGGTAAAGGTAAACTTCCGGCTCAGCCAGATCATGCCAACGTAAGTGTCATCTCGTTTAGAAGTGGTAAGATTCTGGAAACCCCTTCAAGTGAAGAAAAGGTTAGCTCCTAA

Coding sequence (CDS)

ATGACCCGTTCTTCCAACCAAGAACTCTTTTTCTCTGAAGACCTTAATAGGGAAATACGTAGGATTAGGAGAGAAAGGAGAGAAGAAACCATTAACAATATCCCTCAAGATCCAATAGACAACCAAGAGCCTTATCTAGAAAACTCAAACCTTGATAGACAAAATATGGGTCAAGTTAGAAAGAAAACCTTAAGAGAGCTTTCCGAGCCTGACGAGGACCAAAGGCCCCTCTGTATTGTAATTCCCCCAACCACTCAACCCTTCAAACTCAAAGCTGGACTTATCCATCTCTTACCTATATACAAGGGTAGTTCAGGAGAGGACCCCCATAAATACCTCAAAGACTTTCATATGGTTTGTGACTCAATGAGACCGCACGGAGTTTTAGAGGAACAACTTAACCTGAGAGCCTTTTCATTTTCTTTGACTGACACAGCCAAAAGATGGCTTTACTATCTTGAGCCAGGGTCCATCACCACTTGGGGAAGCCTTAAAAAGAAATTTTTAGAAAAGTTCTTTCCAGCCTCAAGAGCCAATAATATTAGGAAAGAAATCTATGGAATAAGGCAAGCTTTTGGGGAGTCCTTGTCTGAATACTGGGAAAGGTTTAAGGAGCTCTGCGCTAGTTTCCCCCATCACCATATTTCTGATCTATCACTAATACAATATTTCTATTTTGGACTACTAACCATGGATAGAAATACAGTAGACGCTGCAGCAGGTGGTGCTTTGGCTGACAAAACCCCTACTGAAGCTAGAGAGCTCATTTCAAGGATGGCAGAAAATTCACAGAATTTTGGAAACAGGGCATCCGAGCTCGACAATTCATTGACAAAGGAGTGTGGGGTATGCGGTCTAGTTGGACATCCTAATGACAAGTATCCTGACTTAGTGGAAGACGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACATACAATGCCGGTTGGAGAGACAACTCTAATCTAAGATGGGAAACGACAACCAAAGACCCTCGCAAGCAACCTCCTCTTCAAACAATCAAGAATGAAATGAAACAACAAATGTCTCATCTAACAAATGCCATAAGCAAACTAGAAGGTAAAGGTAAACTTCCGGCTCAGCCAGATCATGCCAACGTAAGTGTCATCTCGTTTAGAAGTGGTAAGATTCTGGAAACCCCTTCAAGTGAAGAAAAGGTTAGCTCCTAA

Protein sequence

MTRSSNQELFFSEDLNREIRRIRRERREETINNIPQDPIDNQEPYLENSNLDRQNMGQVRKKTLRELSEPDEDQRPLCIVIPPTTQPFKLKAGLIHLLPIYKGSSGEDPHKYLKDFHMVCDSMRPHGVLEEQLNLRAFSFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPASRANNIRKEIYGIRQAFGESLSEYWERFKELCASFPHHHISDLSLIQYFYFGLLTMDRNTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKECGVCGLVGHPNDKYPDLVEDANVIRKYDPHSNTYNAGWRDNSNLRWETTTKDPRKQPPLQTIKNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSVISFRSGKILETPSSEEKVSS

Homology

[Close]

BLAST of PI0000536 vs. ExPASy TrEMBL
Match: A0A5A7SRF5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00500 PE=4 SV=1)

HSP 1 Score: 573.2 bits (1476), Expect = 8.6e-160
Identity = 303/448 (67.63%), Postives = 343/448 (76.56%), Query Frame = 0


Query: 1   MTRSSNQELFFSEDLNREIRRIRRERREETINNIP----QDPIDNQEPYLE---NSNLDR 60
           MTRSSN E  + EDLN+E+RRIRRERREE  NNIP    Q+P+   EP L+   + NL R
Sbjct: 1   MTRSSNLEFPYFEDLNKEVRRIRRERREE--NNIPNLSNQEPLRGLEPSLDSPLDPNLGR 60

Query: 61  QNMGQVRKKTLRELSEPDEDQRPLCIVIPPTTQPFKLKAGLIHLLPIYKGSSGEDPHKYL 120
            NMG+VR+KT+R+L E DEDQRPLCIVI  TTQPF+LK  LIHLLPI+KG+SGEDPHK+L
Sbjct: 61  GNMGEVREKTIRKLDELDEDQRPLCIVISLTTQPFELKPRLIHLLPIFKGNSGEDPHKHL 120

Query: 121 KDFHMVCDSMRPHGVLEEQLNLRAFSFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEKFF 180
           KDFHMVCDSMRPHG+ EEQLNLRAF FSLTD AKRWLYYLEPGSITTWGSLKKKFLEKFF
Sbjct: 121 KDFHMVCDSMRPHGISEEQLNLRAFPFSLTDVAKRWLYYLEPGSITTWGSLKKKFLEKFF 180

Query: 181 PASRANNIRKEIYGIRQAFGESLSEYWERFKELCASFPHHHISDLSLIQYFYFGLLTMDR 240
           PASR NNIRKEIYGIRQAFGESL +YWE+FKELCA+FPHHHI   SLIQYFYFGLL+ DR
Sbjct: 181 PASRTNNIRKEIYGIRQAFGESLLKYWEKFKELCANFPHHHIFYPSLIQYFYFGLLSSDR 240

Query: 241 NTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKE------------- 300
           NTVDAAAGGALA+K PTEARELISRMA+NSQ FGNRASEL+NSLTKE             
Sbjct: 241 NTVDAAAGGALANKIPTEARELISRMAKNSQRFGNRASELENSLTKEVSELKSQMLNMTT 300

Query: 301 ---------------CGVCGLVGHPNDKYPDLVEDANVIRKYDPHSNTYNAGWRDNSNLR 360
                          C VCGLVGHPNDK P+++E+ N+++KYDP+SNTYN GWRDN  LR
Sbjct: 301 LLTSFVQGTPLKVTKCRVCGLVGHPNDKCPEVIEELNIVKKYDPYSNTYNTGWRDNPILR 360

Query: 361 W-----------------ETTTKDPRKQPPLQTI--KNEMKQQMSHLTNAISKLEGKGKL 395
           W                  T  KD  K     T+  + EMKQQM+ LT  ISK++GKGKL
Sbjct: 361 WGNDNQKHTQAPTTSSNQSTNLKDIIKALATNTLSFQQEMKQQMTQLTTTISKMDGKGKL 420

[Close]

BLAST of PI0000536 vs. ExPASy TrEMBL
Match: A0A5D3DIP6 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00340 PE=4 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 1.2e-145
Identity = 280/408 (68.63%), Postives = 314/408 (76.96%), Query Frame = 0


Query: 1   MTRSSNQELFFSEDLNREIRRIRRERREE-TINNIP-QDPIDNQEPYLE---NSNLDRQN 60
           MTRSSN +  + EDLNRE+RRIRRERREE +I+N+  Q+P+   EP L+   + NL R N
Sbjct: 1   MTRSSNLKFSYFEDLNREVRRIRRERREENSIHNLSNQEPLRGLEPSLDSPLDPNLGRGN 60

Query: 61  MGQVRKKTLRELSEPDEDQRPLCIVIPPTTQPFKLKAGLIHLLPIYKGSSGEDPHKYLKD 120
           +G+VR+KTLREL+EPDEDQRPLCIVIP TTQPF+LK+GLIHLL I+KGS GED HK+LKD
Sbjct: 61  LGEVREKTLRELAEPDEDQRPLCIVIPSTTQPFELKSGLIHLLLIFKGSFGEDLHKHLKD 120

Query: 121 FHMVCDSMRPHGVLEEQLNLRAFSFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPA 180
           FHMVC SMRPH + EEQLNLRAF F LTD AKRWLYYLEP  ITTW SLKKKFLEKFFPA
Sbjct: 121 FHMVCGSMRPHSISEEQLNLRAFPFFLTDVAKRWLYYLEPDFITTWSSLKKKFLEKFFPA 180

Query: 181 SRANNIRKEIYGIRQAFGESLSEYWERFKELCASFPHHHISDLSLIQYFYFGLLTMDRNT 240
           SRANNIRKEIYGIRQAFGESLSEYWER KEL ASFPHHHISD SLIQYFY GLL+ DRNT
Sbjct: 181 SRANNIRKEIYGIRQAFGESLSEYWERSKELYASFPHHHISDPSLIQYFYSGLLSSDRNT 240

Query: 241 VDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKE---------CGVCGL 300
           VD AAGGALADKT  E RELISRM ENSQ+FGNRASELDNSLTKE         CGVCGL
Sbjct: 241 VDTAAGGALADKTLIEVRELISRMVENSQSFGNRASELDNSLTKEVSTPLKVTKCGVCGL 300

Query: 301 VGHPNDKYPDLVEDANVIRKYDPHSNTYNAGWRDNSNLRWETTTKDPRKQPPLQTIKNEM 360
           VGHPNDK P+++ED N++++YDP                                    M
Sbjct: 301 VGHPNDKCPEVIEDVNIVQRYDP-----------------------------------TM 360

Query: 361 KQQMSHLTNAISKLEGKGKLPAQPDHANVSVISFRSGKILETPSSEEK 395
           KQQ++ LT AISK+EGKGKL AQ DHANVS IS RSGKIL TP+++EK
Sbjct: 361 KQQITQLTTAISKMEGKGKLLAQQDHANVSAISLRSGKILNTPTTKEK 373

[Close]

BLAST of PI0000536 vs. ExPASy TrEMBL
Match: A0A5D3CZ23 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00950 PE=4 SV=1)

HSP 1 Score: 501.5 bits (1290), Expect = 3.2e-138
Identity = 256/342 (74.85%), Postives = 283/342 (82.75%), Query Frame = 0


Query: 56  MGQVRKKTLRELSEPDEDQRPLCIVIPPTTQPFKLKAGLIHLLPIY-KGSSGEDPHKYLK 115
           MG+VR+KTLREL EPDEDQRPLCIV+PPTTQPF+LK GLIHLL I+ KGS GEDPHK+LK
Sbjct: 1   MGEVREKTLRELVEPDEDQRPLCIVMPPTTQPFELKPGLIHLLAIFIKGSYGEDPHKHLK 60

Query: 116 DFHMVCDSMRPHGVLEEQLNLRAFSFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEKFFP 175
           DFHMVCDSMRPHG+LEEQLNLRAF FSL D AKRWLYYLE  SITTWGS KKKFLEKFFP
Sbjct: 61  DFHMVCDSMRPHGILEEQLNLRAFPFSLMDVAKRWLYYLEASSITTWGSQKKKFLEKFFP 120

Query: 176 ASRANNIRKEIYGIRQAFGESLSEYWERFKELCASFPHHHISDLSLIQYFYFGLLTMDRN 235
           ASRA+NIR     IRQAFGESLSEYWERFKELCASFPHHHI D SLIQYFY GLL+ DR 
Sbjct: 121 ASRASNIR-----IRQAFGESLSEYWERFKELCASFPHHHIFDPSLIQYFYSGLLSFDRI 180

Query: 236 TVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKECGVCGLVGHPNDKY 295
           TVDAAAGGAL +KTPTEARELISRMAENSQ+FGNRASELD+SLTKECGVCGLVGH NDK 
Sbjct: 181 TVDAAAGGALVNKTPTEARELISRMAENSQSFGNRASELDDSLTKECGVCGLVGHLNDKC 240

Query: 296 PDLVEDANVIRKYDPHSNTYNAGWRDNSNLRWETTTKDPRKQPPLQTI--KNEMKQQMSH 355
           P+L+ED N++R+YDPH                 T  +D  K     T+  + EMKQQM+ 
Sbjct: 241 PELIEDVNIVRRYDPHG----------------TNLEDIIKALETNTLSFQQEMKQQMTQ 300

Query: 356 LTNAISKLEGKGKLPAQPDHANVSVISFRSGKILETPSSEEK 395
           LT AISK++GKGKL AQPDHANVS IS RSGKIL+TP+++EK
Sbjct: 301 LTTAISKMDGKGKLSAQPDHANVSAISLRSGKILDTPTTKEK 321

[Close]

BLAST of PI0000536 vs. ExPASy TrEMBL
Match: A0A5A7USL5 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004630 PE=4 SV=1)

HSP 1 Score: 485.7 bits (1249), Expect = 1.8e-133
Identity = 246/349 (70.49%), Postives = 272/349 (77.94%), Query Frame = 0


Query: 56  MGQVRKKTLRELSEPDEDQRPLCIVIPPTTQPFKLKAGLIHLLPIYKGSSGEDPHKYLKD 115
           MG+VR+K LREL+EP+ED RPLCIVIPPTTQPF+LK GLIHLLPI+KGSSGEDPHK+LKD
Sbjct: 1   MGEVREKILRELAEPNEDHRPLCIVIPPTTQPFELKPGLIHLLPIFKGSSGEDPHKHLKD 60

Query: 116 FHMVCDSMRPHGVLEEQLNLRAFSFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPA 175
           FHMVCDSMRP+ + EEQLNLRAF F LTD AK WLYYLEPGSITTWGSLKKKFLEKFFPA
Sbjct: 61  FHMVCDSMRPYSISEEQLNLRAFPFFLTDVAKIWLYYLEPGSITTWGSLKKKFLEKFFPA 120

Query: 176 SRANNIRKEIYGIRQAFGESLSEYWERFKELCASFPHHHISDLSLIQYFYFGLLTMDRNT 235
           SRANNIRKEIYGIRQAFGESLS+YWERFKELCAS PH+HI D SLIQYFY GLL+ DRNT
Sbjct: 121 SRANNIRKEIYGIRQAFGESLSKYWERFKELCASLPHYHIFDPSLIQYFYSGLLSFDRNT 180

Query: 236 VDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKE--------------- 295
           VDAA GGALADKTPTEAR+LISRM ENSQ+FGNRASELDNSLTKE               
Sbjct: 181 VDAATGGALADKTPTEARKLISRMMENSQSFGNRASELDNSLTKEVSELKSQMLNMTTLL 240

Query: 296 -------------CGVCGLVGHPNDKYPDLVEDANVIRKYDPHSNTYNAGWRDNSNLRWE 355
                        CGVCGLVGHPNDK P+++ED N++R+YDPH                 
Sbjct: 241 TSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRRYDPHG---------------- 300

Query: 356 TTTKDPRKQPPLQTI--KNEMKQQMSHLTNAISKLEGKGKLPAQPDHAN 375
           T  +D  K     T+  + EMKQQM+ LT AISK++GKGKLPAQPDHAN
Sbjct: 301 TNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLPAQPDHAN 333

[Close]

BLAST of PI0000536 vs. ExPASy TrEMBL
Match: A0A1S3CD34 (uncharacterized protein LOC103499500 OS=Cucumis melo OX=3656 GN=LOC103499500 PE=4 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 9.0e-125
Identity = 227/299 (75.92%), Postives = 245/299 (81.94%), Query Frame = 0


Query: 56  MGQVRKKTLRELSEPDEDQRPLCIVIPPTTQPFKLKAGLIHLLPIY-KGSSGEDPHKYLK 115
           MG+VR+KTLREL EPDEDQRPLCIV+PPTTQPF+LK GLIHLL I+ KGS GEDPHK+LK
Sbjct: 1   MGEVREKTLRELVEPDEDQRPLCIVMPPTTQPFELKPGLIHLLAIFIKGSYGEDPHKHLK 60

Query: 116 DFHMVCDSMRPHGVLEEQLNLRAFSFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEKFFP 175
           DFHMVCDSMRPHG+LEEQLNLRAF FSL D AKRWLYYLE  SITTWGS KKKFLEKFFP
Sbjct: 61  DFHMVCDSMRPHGILEEQLNLRAFPFSLMDVAKRWLYYLEASSITTWGSQKKKFLEKFFP 120

Query: 176 ASRANNIRKEIYGIRQAFGESLSEYWERFKELCASFPHHHISDLSLIQYFYFGLLTMDRN 235
           ASRA+NIR     IRQAFGESLSEYWERFKELCASFPHHHI D SLIQYFY GLL+ DR 
Sbjct: 121 ASRASNIR-----IRQAFGESLSEYWERFKELCASFPHHHIFDPSLIQYFYSGLLSFDRI 180

Query: 236 TVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKE-------------- 295
           TVDAAAGGAL +KTPTEARELISRMAENSQ+FGNRASELD+SLTKE              
Sbjct: 181 TVDAAAGGALVNKTPTEARELISRMAENSQSFGNRASELDDSLTKEVSELKSQMLNMTTL 240

Query: 296 -------------CGVCGLVGHPNDKYPDLVEDANVIRKYDPHSNTYNAGWRDNSNLRW 327
                        CGVCGLVGH NDK P+L+ED N++R+YDPH NTYN+GWRDN NLRW
Sbjct: 241 LTSFVHTPLKVTKCGVCGLVGHLNDKCPELIEDVNIVRRYDPHGNTYNSGWRDNPNLRW 294

[Close]

BLAST of PI0000536 vs. NCBI nr
Match: KAA0031967.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 573.2 bits (1476), Expect = 1.8e-159
Identity = 303/448 (67.63%), Postives = 343/448 (76.56%), Query Frame = 0


Query: 1   MTRSSNQELFFSEDLNREIRRIRRERREETINNIP----QDPIDNQEPYLE---NSNLDR 60
           MTRSSN E  + EDLN+E+RRIRRERREE  NNIP    Q+P+   EP L+   + NL R
Sbjct: 1   MTRSSNLEFPYFEDLNKEVRRIRRERREE--NNIPNLSNQEPLRGLEPSLDSPLDPNLGR 60

Query: 61  QNMGQVRKKTLRELSEPDEDQRPLCIVIPPTTQPFKLKAGLIHLLPIYKGSSGEDPHKYL 120
            NMG+VR+KT+R+L E DEDQRPLCIVI  TTQPF+LK  LIHLLPI+KG+SGEDPHK+L
Sbjct: 61  GNMGEVREKTIRKLDELDEDQRPLCIVISLTTQPFELKPRLIHLLPIFKGNSGEDPHKHL 120

Query: 121 KDFHMVCDSMRPHGVLEEQLNLRAFSFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEKFF 180
           KDFHMVCDSMRPHG+ EEQLNLRAF FSLTD AKRWLYYLEPGSITTWGSLKKKFLEKFF
Sbjct: 121 KDFHMVCDSMRPHGISEEQLNLRAFPFSLTDVAKRWLYYLEPGSITTWGSLKKKFLEKFF 180

Query: 181 PASRANNIRKEIYGIRQAFGESLSEYWERFKELCASFPHHHISDLSLIQYFYFGLLTMDR 240
           PASR NNIRKEIYGIRQAFGESL +YWE+FKELCA+FPHHHI   SLIQYFYFGLL+ DR
Sbjct: 181 PASRTNNIRKEIYGIRQAFGESLLKYWEKFKELCANFPHHHIFYPSLIQYFYFGLLSSDR 240

Query: 241 NTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKE------------- 300
           NTVDAAAGGALA+K PTEARELISRMA+NSQ FGNRASEL+NSLTKE             
Sbjct: 241 NTVDAAAGGALANKIPTEARELISRMAKNSQRFGNRASELENSLTKEVSELKSQMLNMTT 300

Query: 301 ---------------CGVCGLVGHPNDKYPDLVEDANVIRKYDPHSNTYNAGWRDNSNLR 360
                          C VCGLVGHPNDK P+++E+ N+++KYDP+SNTYN GWRDN  LR
Sbjct: 301 LLTSFVQGTPLKVTKCRVCGLVGHPNDKCPEVIEELNIVKKYDPYSNTYNTGWRDNPILR 360

Query: 361 W-----------------ETTTKDPRKQPPLQTI--KNEMKQQMSHLTNAISKLEGKGKL 395
           W                  T  KD  K     T+  + EMKQQM+ LT  ISK++GKGKL
Sbjct: 361 WGNDNQKHTQAPTTSSNQSTNLKDIIKALATNTLSFQQEMKQQMTQLTTTISKMDGKGKL 420

[Close]

BLAST of PI0000536 vs. NCBI nr
Match: KAA0025369.1 (uncharacterized protein E6C27_scaffold1204G00530 [Cucumis melo var. makuwa] >TYK23432.1 uncharacterized protein E5676_scaffold605G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 526.2 bits (1354), Expect = 2.5e-145
Identity = 280/408 (68.63%), Postives = 314/408 (76.96%), Query Frame = 0


Query: 1   MTRSSNQELFFSEDLNREIRRIRRERREE-TINNIP-QDPIDNQEPYLE---NSNLDRQN 60
           MTRSSN +  + EDLNRE+RRIRRERREE +I+N+  Q+P+   EP L+   + NL R N
Sbjct: 1   MTRSSNLKFSYFEDLNREVRRIRRERREENSIHNLSNQEPLRGLEPSLDSPLDPNLGRGN 60

Query: 61  MGQVRKKTLRELSEPDEDQRPLCIVIPPTTQPFKLKAGLIHLLPIYKGSSGEDPHKYLKD 120
           +G+VR+KTLREL+EPDEDQRPLCIVIP TTQPF+LK+GLIHLL I+KGS GED HK+LKD
Sbjct: 61  LGEVREKTLRELAEPDEDQRPLCIVIPSTTQPFELKSGLIHLLLIFKGSFGEDLHKHLKD 120

Query: 121 FHMVCDSMRPHGVLEEQLNLRAFSFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPA 180
           FHMVC SMRPH + EEQLNLRAF F LTD AKRWLYYLEP  ITTW SLKKKFLEKFFPA
Sbjct: 121 FHMVCGSMRPHSISEEQLNLRAFPFFLTDVAKRWLYYLEPDFITTWSSLKKKFLEKFFPA 180

Query: 181 SRANNIRKEIYGIRQAFGESLSEYWERFKELCASFPHHHISDLSLIQYFYFGLLTMDRNT 240
           SRANNIRKEIYGIRQAFGESLSEYWER KEL ASFPHHHISD SLIQYFY GLL+ DRNT
Sbjct: 181 SRANNIRKEIYGIRQAFGESLSEYWERSKELYASFPHHHISDPSLIQYFYSGLLSSDRNT 240

Query: 241 VDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKE---------CGVCGL 300
           VD AAGGALADKT  E RELISRM ENSQ+FGNRASELDNSLTKE         CGVCGL
Sbjct: 241 VDTAAGGALADKTLIEVRELISRMVENSQSFGNRASELDNSLTKEVSTPLKVTKCGVCGL 300

Query: 301 VGHPNDKYPDLVEDANVIRKYDPHSNTYNAGWRDNSNLRWETTTKDPRKQPPLQTIKNEM 360
           VGHPNDK P+++ED N++++YDP                                    M
Sbjct: 301 VGHPNDKCPEVIEDVNIVQRYDP-----------------------------------TM 360

Query: 361 KQQMSHLTNAISKLEGKGKLPAQPDHANVSVISFRSGKILETPSSEEK 395
           KQQ++ LT AISK+EGKGKL AQ DHANVS IS RSGKIL TP+++EK
Sbjct: 361 KQQITQLTTAISKMEGKGKLLAQQDHANVSAISLRSGKILNTPTTKEK 373

[Close]

BLAST of PI0000536 vs. NCBI nr
Match: KAA0032001.1 (uncharacterized protein E6C27_scaffold134G00970 [Cucumis melo var. makuwa] >TYK16822.1 uncharacterized protein E5676_scaffold96G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 501.5 bits (1290), Expect = 6.6e-138
Identity = 256/342 (74.85%), Postives = 283/342 (82.75%), Query Frame = 0


Query: 56  MGQVRKKTLRELSEPDEDQRPLCIVIPPTTQPFKLKAGLIHLLPIY-KGSSGEDPHKYLK 115
           MG+VR+KTLREL EPDEDQRPLCIV+PPTTQPF+LK GLIHLL I+ KGS GEDPHK+LK
Sbjct: 1   MGEVREKTLRELVEPDEDQRPLCIVMPPTTQPFELKPGLIHLLAIFIKGSYGEDPHKHLK 60

Query: 116 DFHMVCDSMRPHGVLEEQLNLRAFSFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEKFFP 175
           DFHMVCDSMRPHG+LEEQLNLRAF FSL D AKRWLYYLE  SITTWGS KKKFLEKFFP
Sbjct: 61  DFHMVCDSMRPHGILEEQLNLRAFPFSLMDVAKRWLYYLEASSITTWGSQKKKFLEKFFP 120

Query: 176 ASRANNIRKEIYGIRQAFGESLSEYWERFKELCASFPHHHISDLSLIQYFYFGLLTMDRN 235
           ASRA+NIR     IRQAFGESLSEYWERFKELCASFPHHHI D SLIQYFY GLL+ DR 
Sbjct: 121 ASRASNIR-----IRQAFGESLSEYWERFKELCASFPHHHIFDPSLIQYFYSGLLSFDRI 180

Query: 236 TVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKECGVCGLVGHPNDKY 295
           TVDAAAGGAL +KTPTEARELISRMAENSQ+FGNRASELD+SLTKECGVCGLVGH NDK 
Sbjct: 181 TVDAAAGGALVNKTPTEARELISRMAENSQSFGNRASELDDSLTKECGVCGLVGHLNDKC 240

Query: 296 PDLVEDANVIRKYDPHSNTYNAGWRDNSNLRWETTTKDPRKQPPLQTI--KNEMKQQMSH 355
           P+L+ED N++R+YDPH                 T  +D  K     T+  + EMKQQM+ 
Sbjct: 241 PELIEDVNIVRRYDPHG----------------TNLEDIIKALETNTLSFQQEMKQQMTQ 300

Query: 356 LTNAISKLEGKGKLPAQPDHANVSVISFRSGKILETPSSEEK 395
           LT AISK++GKGKL AQPDHANVS IS RSGKIL+TP+++EK
Sbjct: 301 LTTAISKMDGKGKLSAQPDHANVSAISLRSGKILDTPTTKEK 321

[Close]

BLAST of PI0000536 vs. NCBI nr
Match: KAA0058150.1 (uncharacterized protein E6C27_scaffold274G004630 [Cucumis melo var. makuwa])

HSP 1 Score: 485.7 bits (1249), Expect = 3.7e-133
Identity = 246/349 (70.49%), Postives = 272/349 (77.94%), Query Frame = 0


Query: 56  MGQVRKKTLRELSEPDEDQRPLCIVIPPTTQPFKLKAGLIHLLPIYKGSSGEDPHKYLKD 115
           MG+VR+K LREL+EP+ED RPLCIVIPPTTQPF+LK GLIHLLPI+KGSSGEDPHK+LKD
Sbjct: 1   MGEVREKILRELAEPNEDHRPLCIVIPPTTQPFELKPGLIHLLPIFKGSSGEDPHKHLKD 60

Query: 116 FHMVCDSMRPHGVLEEQLNLRAFSFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPA 175
           FHMVCDSMRP+ + EEQLNLRAF F LTD AK WLYYLEPGSITTWGSLKKKFLEKFFPA
Sbjct: 61  FHMVCDSMRPYSISEEQLNLRAFPFFLTDVAKIWLYYLEPGSITTWGSLKKKFLEKFFPA 120

Query: 176 SRANNIRKEIYGIRQAFGESLSEYWERFKELCASFPHHHISDLSLIQYFYFGLLTMDRNT 235
           SRANNIRKEIYGIRQAFGESLS+YWERFKELCAS PH+HI D SLIQYFY GLL+ DRNT
Sbjct: 121 SRANNIRKEIYGIRQAFGESLSKYWERFKELCASLPHYHIFDPSLIQYFYSGLLSFDRNT 180

Query: 236 VDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKE--------------- 295
           VDAA GGALADKTPTEAR+LISRM ENSQ+FGNRASELDNSLTKE               
Sbjct: 181 VDAATGGALADKTPTEARKLISRMMENSQSFGNRASELDNSLTKEVSELKSQMLNMTTLL 240

Query: 296 -------------CGVCGLVGHPNDKYPDLVEDANVIRKYDPHSNTYNAGWRDNSNLRWE 355
                        CGVCGLVGHPNDK P+++ED N++R+YDPH                 
Sbjct: 241 TSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRRYDPHG---------------- 300

Query: 356 TTTKDPRKQPPLQTI--KNEMKQQMSHLTNAISKLEGKGKLPAQPDHAN 375
           T  +D  K     T+  + EMKQQM+ LT AISK++GKGKLPAQPDHAN
Sbjct: 301 TNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLPAQPDHAN 333

[Close]

BLAST of PI0000536 vs. NCBI nr
Match: XP_008460738.1 (PREDICTED: uncharacterized protein LOC103499500 [Cucumis melo])

HSP 1 Score: 456.8 bits (1174), Expect = 1.9e-124
Identity = 227/299 (75.92%), Postives = 245/299 (81.94%), Query Frame = 0


Query: 56  MGQVRKKTLRELSEPDEDQRPLCIVIPPTTQPFKLKAGLIHLLPIY-KGSSGEDPHKYLK 115
           MG+VR+KTLREL EPDEDQRPLCIV+PPTTQPF+LK GLIHLL I+ KGS GEDPHK+LK
Sbjct: 1   MGEVREKTLRELVEPDEDQRPLCIVMPPTTQPFELKPGLIHLLAIFIKGSYGEDPHKHLK 60

Query: 116 DFHMVCDSMRPHGVLEEQLNLRAFSFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEKFFP 175
           DFHMVCDSMRPHG+LEEQLNLRAF FSL D AKRWLYYLE  SITTWGS KKKFLEKFFP
Sbjct: 61  DFHMVCDSMRPHGILEEQLNLRAFPFSLMDVAKRWLYYLEASSITTWGSQKKKFLEKFFP 120

Query: 176 ASRANNIRKEIYGIRQAFGESLSEYWERFKELCASFPHHHISDLSLIQYFYFGLLTMDRN 235
           ASRA+NIR     IRQAFGESLSEYWERFKELCASFPHHHI D SLIQYFY GLL+ DR 
Sbjct: 121 ASRASNIR-----IRQAFGESLSEYWERFKELCASFPHHHIFDPSLIQYFYSGLLSFDRI 180

Query: 236 TVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKE-------------- 295
           TVDAAAGGAL +KTPTEARELISRMAENSQ+FGNRASELD+SLTKE              
Sbjct: 181 TVDAAAGGALVNKTPTEARELISRMAENSQSFGNRASELDDSLTKEVSELKSQMLNMTTL 240

Query: 296 -------------CGVCGLVGHPNDKYPDLVEDANVIRKYDPHSNTYNAGWRDNSNLRW 327
                        CGVCGLVGH NDK P+L+ED N++R+YDPH NTYN+GWRDN NLRW
Sbjct: 241 LTSFVHTPLKVTKCGVCGLVGHLNDKCPELIEDVNIVRRYDPHGNTYNSGWRDNPNLRW 294

The following BLAST results are available for this feature:

BLAST of PI0000536 vs.


Match Name	E-value	Identity	Description

BLAST of PI0000536 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SRF5	8.6e-160	67.63	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3DIP6	1.2e-145	68.63	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CZ23	3.2e-138	74.85	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7USL5	1.8e-133	70.49	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3CD34	9.0e-125	75.92	uncharacterized protein LOC103499500 OS=Cucumis melo OX=3656 GN=LOC103499500 PE=...	[more]

BLAST of PI0000536 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031967.1	1.8e-159	67.63	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotranspos...	[more]
KAA0025369.1	2.5e-145	68.63	uncharacterized protein E6C27_scaffold1204G00530 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0032001.1	6.6e-138	74.85	uncharacterized protein E6C27_scaffold134G00970 [Cucumis melo var. makuwa] >TYK1...	[more]
KAA0058150.1	3.7e-133	70.49	uncharacterized protein E6C27_scaffold274G004630 [Cucumis melo var. makuwa]	[more]
XP_008460738.1	1.9e-124	75.92	PREDICTED: uncharacterized protein LOC103499500 [Cucumis melo]	[more]

BLAST of PI0000536 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 12..32
None	No IPR available	COILS	Coil	Coil	coord: 343..363
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 110..349
None	No IPR available	PANTHER	PTHR24559:SF334	SUBFAMILY NOT NAMED	coord: 110..349
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 137..228 e-value: 1.7E-17 score: 63.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0000536.1	PI0000536.1	mRNA