PI0000461 (gene) Melon (PI 482460) v1

Overview


Name	PI0000461
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr12: 19640068 .. 19640351 (-)
RNA-Seq Expression	PI0000461
Synteny	PI0000461

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTTTGGATATTTGGGAAGCAGTGGAAGAGGATTATGAAATTCCTACTCTTCTAGACAATCCTACCATGGCGCAAATCAAAGCGCAAAAGGAGAAGAAGACAAAGAAATCCAAGGCAAGGCATGTTTGTTCGCTACAGTCTCATCTACTATCTTCACTCGAATTATGACTCTGAGATCAACATATGAGATATGGAATTATCTCAACTCAGAGTATGAGGGAAATGAAAGAATCAAAGGAATGTGTGTGCTAAACTTGATTCGAGAATTCGAGTTGTAG

mRNA sequence

ATGGAAGCTTTGGATATTTGGGAAGCAGTGGAAGAGGATTATGAAATTCCTACTCTTCTAGACAATCCTACCATGGCGCAAATCAAAGCATGTTTGTTCGCTACAGTCTCATCTACTATCTTCACTCGAATTATGACTCTGAGATCAACATATGAGATATGGAATTATCTCAACTCAGAGTATGAGGGAAATGAAAGAATCAAAGGAATGTGTGTGCTAAACTTGATTCGAGAATTCGAGTTGTAG

Coding sequence (CDS)

ATGGAAGCTTTGGATATTTGGGAAGCAGTGGAAGAGGATTATGAAATTCCTACTCTTCTAGACAATCCTACCATGGCGCAAATCAAAGCATGTTTGTTCGCTACAGTCTCATCTACTATCTTCACTCGAATTATGACTCTGAGATCAACATATGAGATATGGAATTATCTCAACTCAGAGTATGAGGGAAATGAAAGAATCAAAGGAATGTGTGTGCTAAACTTGATTCGAGAATTCGAGTTGTAG

Protein sequence

MEALDIWEAVEEDYEIPTLLDNPTMAQIKACLFATVSSTIFTRIMTLRSTYEIWNYLNSEYEGNERIKGMCVLNLIREFEL

Homology

[Close]

BLAST of PI0000461 vs. ExPASy TrEMBL
Match: A0A5A7SQF5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00250 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.9e-30
Identity = 73/94 (77.66%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 1   MEALDIWEAVEEDYEIPTLLDNPTMAQI-------------KACLFATVSSTIFTRIMTL 60
           MEALDIWEAVEEDY IP L DNPTMAQI             KACLFA VSSTIFTRIMT+
Sbjct: 33  MEALDIWEAVEEDYVIPALPDNPTMAQIKVQKEKKTKKSKPKACLFAAVSSTIFTRIMTM 92

Query: 61  RSTYEIWNYLNSEYEGNERIKGMCVLNLIREFEL 82
           RS YEIWNYL SEYEG+ERIKGMCVLNLIREFEL
Sbjct: 93  RSAYEIWNYLKSEYEGDERIKGMCVLNLIREFEL 126

[Close]

BLAST of PI0000461 vs. ExPASy TrEMBL
Match: A0A5D3E2V7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00370 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 6.5e-30
Identity = 74/94 (78.72%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 1   MEALDIWEAVEEDYEIPTLLDNPTMAQI-------------KACLFATVSSTIFTRIMTL 60
           MEALDIWEAVEEDYEIP L DNPTMAQI             KACLFA VSSTIFTRIMTL
Sbjct: 33  MEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTL 92

Query: 61  RSTYEIWNYLNSEYEGNERIKGMCVLNLIREFEL 82
           RS YEIWNYL SEYEG+ERIKGM VLNLIREFEL
Sbjct: 93  RSAYEIWNYLKSEYEGDERIKGMRVLNLIREFEL 126

[Close]

BLAST of PI0000461 vs. ExPASy TrEMBL
Match: A0A5D3DMJ1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00670 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 6.5e-30
Identity = 74/94 (78.72%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 1   MEALDIWEAVEEDYEIPTLLDNPTMAQI-------------KACLFATVSSTIFTRIMTL 60
           MEALDIWEAVEEDYEIP L DNPTMAQI             KACLFA VSSTIFTRIMTL
Sbjct: 33  MEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTL 92

Query: 61  RSTYEIWNYLNSEYEGNERIKGMCVLNLIREFEL 82
           RS YEIWNYL SEYEG+ERIKGM VLNLIREFEL
Sbjct: 93  RSAYEIWNYLKSEYEGDERIKGMRVLNLIREFEL 126

[Close]

BLAST of PI0000461 vs. ExPASy TrEMBL
Match: A0A5D3BL45 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00490 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 6.5e-30
Identity = 74/94 (78.72%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 1   MEALDIWEAVEEDYEIPTLLDNPTMAQI-------------KACLFATVSSTIFTRIMTL 60
           MEALDIWEAVEEDYEIP L DNPTMAQI             KACLFA VSSTIFTRIMTL
Sbjct: 652 MEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTL 711

Query: 61  RSTYEIWNYLNSEYEGNERIKGMCVLNLIREFEL 82
           RS YEIWNYL SEYEG+ERIKGM VLNLIREFEL
Sbjct: 712 RSAYEIWNYLKSEYEGDERIKGMRVLNLIREFEL 745

[Close]

BLAST of PI0000461 vs. ExPASy TrEMBL
Match: A0A5D3DBU0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00950 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 6.5e-30
Identity = 74/94 (78.72%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 1   MEALDIWEAVEEDYEIPTLLDNPTMAQI-------------KACLFATVSSTIFTRIMTL 60
           MEALDIWEAVEEDYEIP L DNPTMAQI             KACLFA VSSTIFTRIMTL
Sbjct: 149 MEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTL 208

Query: 61  RSTYEIWNYLNSEYEGNERIKGMCVLNLIREFEL 82
           RS YEIWNYL SEYEG+ERIKGM VLNLIREFEL
Sbjct: 209 RSAYEIWNYLKSEYEGDERIKGMRVLNLIREFEL 242

[Close]

BLAST of PI0000461 vs. NCBI nr
Match: KAA0033140.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK17093.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 140.6 bits (353), Expect = 6.0e-30
Identity = 73/94 (77.66%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 1   MEALDIWEAVEEDYEIPTLLDNPTMAQI-------------KACLFATVSSTIFTRIMTL 60
           MEALDIWEAVEEDY IP L DNPTMAQI             KACLFA VSSTIFTRIMT+
Sbjct: 33  MEALDIWEAVEEDYVIPALPDNPTMAQIKVQKEKKTKKSKPKACLFAAVSSTIFTRIMTM 92

Query: 61  RSTYEIWNYLNSEYEGNERIKGMCVLNLIREFEL 82
           RS YEIWNYL SEYEG+ERIKGMCVLNLIREFEL
Sbjct: 93  RSAYEIWNYLKSEYEGDERIKGMCVLNLIREFEL 126

[Close]

BLAST of PI0000461 vs. NCBI nr
Match: KAA0025181.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 139.4 bits (350), Expect = 1.3e-29
Identity = 74/94 (78.72%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 1  MEALDIWEAVEEDYEIPTLLDNPTMAQI-------------KACLFATVSSTIFTRIMTL 60
          MEALDIWEAVEEDYEIP L DNPTMAQI             KACLFA VSSTIFTRIMTL
Sbjct: 5  MEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTL 64

Query: 61 RSTYEIWNYLNSEYEGNERIKGMCVLNLIREFEL 82
          RS YEIWNYL SEYEG+ERIKGM VLNLIREFEL
Sbjct: 65 RSAYEIWNYLKSEYEGDERIKGMRVLNLIREFEL 98

[Close]

BLAST of PI0000461 vs. NCBI nr
Match: TYJ95793.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK04080.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK07482.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK23562.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK24808.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 139.4 bits (350), Expect = 1.3e-29
Identity = 74/94 (78.72%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 1   MEALDIWEAVEEDYEIPTLLDNPTMAQI-------------KACLFATVSSTIFTRIMTL 60
           MEALDIWEAVEEDYEIP L DNPTMAQI             KACLFA VSSTIFTRIMTL
Sbjct: 33  MEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTL 92

Query: 61  RSTYEIWNYLNSEYEGNERIKGMCVLNLIREFEL 82
           RS YEIWNYL SEYEG+ERIKGM VLNLIREFEL
Sbjct: 93  RSAYEIWNYLKSEYEGDERIKGMRVLNLIREFEL 126

[Close]

BLAST of PI0000461 vs. NCBI nr
Match: KAA0041382.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 139.4 bits (350), Expect = 1.3e-29
Identity = 74/94 (78.72%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 1  MEALDIWEAVEEDYEIPTLLDNPTMAQI-------------KACLFATVSSTIFTRIMTL 60
          MEALDIWEAVEEDYEIP L DNPTMAQI             KACLFA VSSTIFTRIMTL
Sbjct: 5  MEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTL 64

Query: 61 RSTYEIWNYLNSEYEGNERIKGMCVLNLIREFEL 82
          RS YEIWNYL SEYEG+ERIKGM VLNLIREFEL
Sbjct: 65 RSAYEIWNYLKSEYEGDERIKGMRVLNLIREFEL 98

[Close]

BLAST of PI0000461 vs. NCBI nr
Match: KAA0064094.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 139.4 bits (350), Expect = 1.3e-29
Identity = 74/94 (78.72%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 1   MEALDIWEAVEEDYEIPTLLDNPTMAQI-------------KACLFATVSSTIFTRIMTL 60
           MEALDIWEAVEEDYEIP L DNPTMAQI             KACLFA VSSTIFTRIMTL
Sbjct: 33  MEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTL 92

Query: 61  RSTYEIWNYLNSEYEGNERIKGMCVLNLIREFEL 82
           RS YEIWNYL SEYEG+ERIKGM VLNLIREFEL
Sbjct: 93  RSAYEIWNYLKSEYEGDERIKGMRVLNLIREFEL 126

The following BLAST results are available for this feature:

BLAST of PI0000461 vs.


Match Name	E-value	Identity	Description

BLAST of PI0000461 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQF5	2.9e-30	77.66	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3E2V7	6.5e-30	78.72	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DMJ1	6.5e-30	78.72	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BL45	6.5e-30	78.72	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DBU0	6.5e-30	78.72	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of PI0000461 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033140.1	6.0e-30	77.66	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0025181.1	1.3e-29	78.72	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYJ95793.1	1.3e-29	78.72	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0041382.1	1.3e-29	78.72	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0064094.1	1.3e-29	78.72	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of PI0000461 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35317:SF11	SUBFAMILY NOT NAMED	coord: 1..80
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0000461.1	PI0000461.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding