PI0000400 (gene) Melon (PI 482460) v1

Overview
NamePI0000400
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr11: 26238897 .. 26239199 (+)
RNA-Seq ExpressionPI0000400
SyntenyPI0000400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACCGCGAGTAAGGCAAGTGGCAACTGGAGTCCGAGTTACTGGGAGCGCTAATAGAGCGCCTGAATCGGATCAAATGTCAAGTAATCCTCGTGTTGCAATTGAGCAAAACGCAGAAGAAAGTATATTCAATCGTTTTACTCAGAGAGTGGCAGACTACATTATGTCATCAAACCATGCAGCAGATAAAAGATTTGGCATTAAAAGGTTGAAGGCATTGGGAGCAACAACCTTTGAAAGGACCACTAATCTGGCCGACACGGAGATTTTAGCAACATATAAGATTGTTGTCAAATATTGA

mRNA sequence

ATGTCACCGCGAGTAAGGCAAGTGGCAACTGGAGTCCGAGTTACTGGGAGCGCTAATAGAGCGCCTGAATCGGATCAAATGTCAAGTAATCCTCGTGTTGCAATTGAGCAAAACGCAGAAGAAAGTATATTCAATCGTTTTACTCAGAGAGTGGCAGACTACATTATGTCATCAAACCATGCAGCAGATAAAAGATTTGGCATTAAAAGGTTGAAGGCATTGGGAGCAACAACCTTTGAAAGGACCACTAATCTGGCCGACACGGAGATTTTAGCAACATATAAGATTGTTGTCAAATATTGA

Coding sequence (CDS)

ATGTCACCGCGAGTAAGGCAAGTGGCAACTGGAGTCCGAGTTACTGGGAGCGCTAATAGAGCGCCTGAATCGGATCAAATGTCAAGTAATCCTCGTGTTGCAATTGAGCAAAACGCAGAAGAAAGTATATTCAATCGTTTTACTCAGAGAGTGGCAGACTACATTATGTCATCAAACCATGCAGCAGATAAAAGATTTGGCATTAAAAGGTTGAAGGCATTGGGAGCAACAACCTTTGAAAGGACCACTAATCTGGCCGACACGGAGATTTTAGCAACATATAAGATTGTTGTCAAATATTGA

Protein sequence

MSPRVRQVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRFGIKRLKALGATTFERTTNLADTEILATYKIVVKY
Homology
BLAST of PI0000400 vs. ExPASy TrEMBL
Match: A0A5A7TVM1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00730 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-15
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 0

Query: 4   RVRQVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAAD 63
           R RQVA  V VT  ANRA  S ++SSNP  ++ QN EES+F+RF QR+ D+ M      D
Sbjct: 29  RGRQVAISVPVTRKANRAQASGKISSNPHDSVRQNVEESMFDRFAQRLTDHFMPIPSTVD 88

Query: 64  KRFGIKRLKALGATTFERTTNLAD 88
           KRFGI+RLKALGA TFE  TNLAD
Sbjct: 89  KRFGIERLKALGAMTFEGKTNLAD 112

BLAST of PI0000400 vs. ExPASy TrEMBL
Match: A0A5D3BUF6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00680 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.9e-15
Identity = 50/94 (53.19%), Postives = 66/94 (70.21%), Query Frame = 0

Query: 1  MSPR-----VRQVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYI 60
          M+PR      RQV  GV  T SAN+  ES+++S+NP   I+QN E+S+F+RF QR+ D+ 
Sbjct: 1  MAPRERVRICRQVTIGVPATESANKVQESNEISNNPYDPIKQNTEKSMFDRFGQRLVDHF 60

Query: 61 MSSNHAADKRFGIKRLKALGATTFERTTNLADTE 90
          M +    DKRF I+RL+ALGATTFE T NLADT+
Sbjct: 61 MPTPFIVDKRFNIERLRALGATTFEETKNLADTK 94

BLAST of PI0000400 vs. ExPASy TrEMBL
Match: A0A5D3DVY7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold93G00280 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.5e-12
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 7  QVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRF 66
          QVA  V+  GSANRA   D+MSSNP   I QN EES+FNRF +RVAD+++      +KR 
Sbjct: 2  QVAMNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAERVADHLIPIKSNVEKRL 61

Query: 67 GIKRLKALGATTFERT 83
           I+R+KALGATTFE T
Sbjct: 62 TIERIKALGATTFEGT 77

BLAST of PI0000400 vs. ExPASy TrEMBL
Match: A0A5A7UFQ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1371G00020 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.6e-12
Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = 0

Query: 7  QVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRF 66
          QVA  V+  GSANRA   D+MSSNP   I QN EES+FNRF QRVAD+++      +KR 
Sbjct: 2  QVAMNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAQRVADHLIPIKSNVEKRL 61

Query: 67 GIKRLKALGATTFERT 83
           I+R+KALGAT FE T
Sbjct: 62 TIERIKALGATAFEGT 77

BLAST of PI0000400 vs. ExPASy TrEMBL
Match: A0A5A7UG91 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00210 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.4e-11
Identity = 44/88 (50.00%), Postives = 57/88 (64.77%), Query Frame = 0

Query: 2  SPRVRQVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHA 61
          S R  QV TGV+ T + +R  ESD+MS N    + QN  ES+F+RFT+++ D+ M +   
Sbjct: 7  SRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHFMPTPST 66

Query: 62 ADKRFGIKRLKALGATTFERTTNLADTE 90
            KRFGIKRLKAL A TFE TTN  D +
Sbjct: 67 MYKRFGIKRLKALRAMTFEGTTNPVDAK 94

BLAST of PI0000400 vs. NCBI nr
Match: KAE8648186.1 (hypothetical protein Csa_018470 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 3.6e-16
Identity = 53/86 (61.63%), Postives = 59/86 (68.60%), Query Frame = 0

Query: 4   RVRQVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAAD 63
           R  QV TGV  TG ANRA ESD+MSSNP   I QN EES+F+ F QR  D+ +S     D
Sbjct: 30  RGTQVTTGVSTTGRANRARESDEMSSNPHHPIGQNTEESVFDLFAQRFGDHFISIPSNVD 89

Query: 64  KRFGIKRLKALGATTFERTTNLADTE 90
           KRF I+RLKAL ATTFE TTN AD E
Sbjct: 90  KRFDIERLKALKATTFEGTTNSADAE 115

BLAST of PI0000400 vs. NCBI nr
Match: KAA0047014.1 (hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa] >TYK04769.1 hypothetical protein E5676_scaffold68G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 3.0e-15
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 0

Query: 4   RVRQVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAAD 63
           R RQVA  V VT  ANRA  S ++SSNP  ++ QN EES+F+RF QR+ D+ M      D
Sbjct: 29  RGRQVAISVPVTRKANRAQASGKISSNPHDSVRQNVEESMFDRFAQRLTDHFMPIPSTVD 88

Query: 64  KRFGIKRLKALGATTFERTTNLAD 88
           KRFGI+RLKALGA TFE  TNLAD
Sbjct: 89  KRFGIERLKALGAMTFEGKTNLAD 112

BLAST of PI0000400 vs. NCBI nr
Match: KAA0039561.1 (hypothetical protein E6C27_scaffold744G00310 [Cucumis melo var. makuwa] >TYK01739.1 hypothetical protein E5676_scaffold775G00680 [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 4.0e-15
Identity = 50/94 (53.19%), Postives = 66/94 (70.21%), Query Frame = 0

Query: 1  MSPR-----VRQVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYI 60
          M+PR      RQV  GV  T SAN+  ES+++S+NP   I+QN E+S+F+RF QR+ D+ 
Sbjct: 1  MAPRERVRICRQVTIGVPATESANKVQESNEISNNPYDPIKQNTEKSMFDRFGQRLVDHF 60

Query: 61 MSSNHAADKRFGIKRLKALGATTFERTTNLADTE 90
          M +    DKRF I+RL+ALGATTFE T NLADT+
Sbjct: 61 MPTPFIVDKRFNIERLRALGATTFEETKNLADTK 94

BLAST of PI0000400 vs. NCBI nr
Match: TYK27664.1 (uncharacterized protein E5676_scaffold93G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 3.1e-12
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 7  QVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRF 66
          QVA  V+  GSANRA   D+MSSNP   I QN EES+FNRF +RVAD+++      +KR 
Sbjct: 2  QVAMNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAERVADHLIPIKSNVEKRL 61

Query: 67 GIKRLKALGATTFERT 83
           I+R+KALGATTFE T
Sbjct: 62 TIERIKALGATTFEGT 77

BLAST of PI0000400 vs. NCBI nr
Match: KAA0054080.1 (hypothetical protein E6C27_scaffold1371G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 5.4e-12
Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = 0

Query: 7  QVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRF 66
          QVA  V+  GSANRA   D+MSSNP   I QN EES+FNRF QRVAD+++      +KR 
Sbjct: 2  QVAMNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAQRVADHLIPIKSNVEKRL 61

Query: 67 GIKRLKALGATTFERT 83
           I+R+KALGAT FE T
Sbjct: 62 TIERIKALGATAFEGT 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TVM11.5e-1559.52Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BUF61.9e-1553.19Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DVY71.5e-1257.89Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UFQ12.6e-1257.89Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UG916.4e-1150.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAE8648186.13.6e-1661.63hypothetical protein Csa_018470 [Cucumis sativus][more]
KAA0047014.13.0e-1559.52hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa] >TYK047... [more]
KAA0039561.14.0e-1553.19hypothetical protein E6C27_scaffold744G00310 [Cucumis melo var. makuwa] >TYK0173... [more]
TYK27664.13.1e-1257.89uncharacterized protein E5676_scaffold93G00280 [Cucumis melo var. makuwa][more]
KAA0054080.15.4e-1257.89hypothetical protein E6C27_scaffold1371G00020 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0000400.1PI0000400.1mRNA