PI0000338 (gene) Melon (PI 482460) v1

Overview


Name	PI0000338
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	transcription elongation factor TFIIS
Location	chr03: 24223014 .. 24225990 (-)
RNA-Seq Expression	PI0000338
Synteny	PI0000338

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATGAAACAAATAAATAAAAAACTTAACATTAAGAATCGAATAATAAATTAATTGAATTATTTGTTAGAGTATTATAATTATATGATCTGATGATCTATATTAAAACAAATAGATATCACGCGGAACACATCGCACCATCTATTTTTTTGTGACATAGTCTATGGTTTTTGTTTCTGAAGTTATTCCTGCAACATTCTTTAGTTAGTATCCTTAACATTAATTTTTAAGCAATGCGCTTATATTTAAACTTCAATTTCCAATGATTGAAGTTCTTGTGCAGTGTAGTTTAGGAATATTTTTCAATTTTTTGCATAATAAACATTTTAAATTAAAATTTATTAATAAAAAAATAGAGAAATGACCAATCAAAAGCTGATTTCCTTTTAAGATTTAGATTTAGATTTAGATATAGATTAGTTGGAAATCGTTTTATGTTTAATTTCTCAAAAGGAAAAGAAACGCGCTCTGTTGGATTAAATCTGAGAAAACGACGTAGAATCCAATTTACCGAAGCGTGAATGTAAAAAGAACTAAAGAAGTAGATGAAATACCTAAAACCCCCTTCCCATTCTTACACTATCCGTGGATAAATAGGTAAAATCAAAGCTGTTTTGAGTTTTGACCTGTTCTATGGTTCTAGGATCTTACCATTATCCTGTATAATACGTGTTTCTTTTCTGTCCGTCGGATCAAACTCCCTCTTCCTTCCTTTACCCTATTTCCTCGTCCCCAAGCCCTCGTTTCAATTTCCTTACTTCCTCCGCCGCCGTCTCTCTGCCGAAAAGGGGTTTTTCCGGACCCGATTCCGATTGATTTTCCCTTCTGCTGTTCTCTGTCTTCACTGCTTTAGTTCCTATAGCGAGGGGTTTTGCTGTCGGCGATTCAGATCTCTGTAAGTGATACTCATTCGAATCGATATTTGGATGTCTTTTGATTCATTGCTTTTCCTTTGCTTGTTCATTGAGAAAAGAAGTTGATTCGATTTTTATTTAAATCCTTTTTTTTTTTTTTGTGTTCATGCGTTTGTTTATATCTTAATATCTTTATGTTTTTTGGTTGTTGTGGTTGTTGGGATCCGATCGTTCTTTTCTTCGAATGTGGTGGATAGATAATATAAAAAATCCGAGTTGGCGGTGATTCGATGGAGAATGAGCTGGTGGAATTGTTTGAAGCGGCGAAGAAGGCTGCAGATGCCGCTGCAGCACCATCAAATGATGGGGGAGCCGAAGAAAGTCGTTGCCTTGATGCCCTAAGGCAGCTTAAGAAGTTTCCTGTTACTTATCAAATCCTTGTTTCCACTCAGGTTTTCTTCTTATTAGACTTGAAATTTGTTTCTGAGAATGTAATTAGCGCAAGTTTATGAAATCATGCATGGTTTTTATTATGAATTTAGCTTAAATTCATTGTCTGCTTGCTTACGAATTGTTTCATAACGAATTGAGTTCACTCGATTTCATACGTTGTTTATGTCGTTCACGTTCACGTAACAAAGTCATCTCATTTGTGACCCTTGTCATTTTCGGGGAGAGAATAATGGCACGATATTCCTTGTTATTTAGGGCATTTGAATTGACTTTTCTAAGTGTTTATGAACATTTTTTAAACACTTTGGAAGTCAATCCATCAATAATCTTTTGTTGCATCTTTGTAATTGAGATCAATTTGCCTGTATTGATTGCTTATATATATTGTTTTCTATAGGTTGGGAAGCGTCTTCGGCACCTCACTAAACACCCCAAGAAGAAAATACAGGAGCATGCTTCTGACCTGATTGAGATGTGGAAGGAAATAGTAATCAAGGAGACTAATAAGAATAAGAAAAATGGAAATGCCAGCAGTAAAGATTCACCTAAAATTGGTTCTCCCAGTGCAGAGTCAGTTAAAGTGGAGAAGTTTCAAAAATCATCTTCCATGAAGGTTGAGAGAGTTTCCAAGGTCGAGCAATTTGATAGAAATGGTGCCACAAGCTCCGTAAAATATTCCAGATCGGAAAGCACGGTCTCGGAGAGAAACTCTATCAAGGTTGAGAAAACCGATTCAGTGGTCAAGGTTGAAAGGATTGTTAAAGAAGAGAAGAAACCATCAAGTGGCGCTGCTGCACCTCCAAAACTTACTTCCATGATTAAATCAAAAGATGCTGCTCGAGACAAAATAAGAGAACTTCTCTTCGAGGCTTTCTCCAAAGTTCCTGGTGAGGCTGATGAAGATGTTATGGATGAAGTTAATGCAAGCGATCCCATCCGTGTTGCTGTTTCTGTAGAATCCGTGATGTTTGAAAATTGGGGAGGTTCTACGGGTGCACAGAAGGCCAAGTATAGATCTATAATGTTTAACCTCAAGGATCCGAAGAACCCAGACTTTCGAAGAAAAGTTCTTCTAGGACTTATAAAGCCAGAAAGGATGATCAATATGAGCACAGCCGATATGGCAAGCGATCAGAGAAAACGTGAAAATGAAGAGATTGCACAAAAAGCTTTATTCGATTGTGAGCGTGGAGGAGCACCAAAAGCTACTACCGATCAATTCAAGTGTGGTCGATGCGGTCAGCGCAAAACAACCTACTATCAATTACAGACGCGGAGTGCGGATGAACCTATGACGACCTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTCTGCTGAGTCTATTTTGAGATGCTGAAAATGTTATTGTTTGGAACAATCTACTGAGCAATTAGTGTTATTTTGCCCTGACATTGGTTGCTGCAGTTTGTAATCTCGTTCCACATTGTTACATTTAGAACGTAGGAGCTTCTCTATTGTAGGATGTCTTAAGTGCCAATTTATTAAGAAATTCAGTGTATAAACTTTTTTATTTGTTATTTTCTTTGGTACTTTTACGAGTTTTCATACACTTGCAAGGATCTCTTTAACTCAACGTTCAACATTAACTGTTTGTTAGCATTATGAGATCTGATTTTGACTGTAATGAATTTCTTTTTATTATT

mRNA sequence

TTATGAAACAAATAAATAAAAAACTTAACATTAAGAATCGAATAATAAATTAATTGAATTATTTGTTAGAGTATTATAATTATATGATCTGATGATCTATATTAAAACAAATAGATATCACGCGGAACACATCGCACCATCTATTTTTTTGTGACATAGTCTATGGTTTTTGTTTCTGAAGTTATTCCTGCAACATTCTTTAGTTAGTATCCTTAACATTAATTTTTAAGCAATGCGCTTATATTTAAACTTCAATTTCCAATGATTGAAGTTCTTGTGCAGTGTAGTTTAGGAATATTTTTCAATTTTTTGCATAATAAACATTTTAAATTAAAATTTATTAATAAAAAAATAGAGAAATGACCAATCAAAAGCTGATTTCCTTTTAAGATTTAGATTTAGATTTAGATATAGATTAGTTGGAAATCGTTTTATGTTTAATTTCTCAAAAGGAAAAGAAACGCGCTCTGTTGGATTAAATCTGAGAAAACGACGTAGAATCCAATTTACCGAAGCGTGAATGTAAAAAGAACTAAAGAAGTAGATGAAATACCTAAAACCCCCTTCCCATTCTTACACTATCCGTGGATAAATAGGTAAAATCAAAGCTGTTTTGAGTTTTGACCTGTTCTATGGTTCTAGGATCTTACCATTATCCTGTATAATACGTGTTTCTTTTCTGTCCGTCGGATCAAACTCCCTCTTCCTTCCTTTACCCTATTTCCTCGTCCCCAAGCCCTCGTTTCAATTTCCTTACTTCCTCCGCCGCCGTCTCTCTGCCGAAAAGGGGTTTTTCCGGACCCGATTCCGATTGATTTTCCCTTCTGCTGTTCTCTGTCTTCACTGCTTTAGTTCCTATAGCGAGGGGTTTTGCTGTCGGCGATTCAGATCTCTATAATATAAAAAATCCGAGTTGGCGGTGATTCGATGGAGAATGAGCTGGTGGAATTGTTTGAAGCGGCGAAGAAGGCTGCAGATGCCGCTGCAGCACCATCAAATGATGGGGGAGCCGAAGAAAGTCGTTGCCTTGATGCCCTAAGGCAGCTTAAGAAGTTTCCTGTTACTTATCAAATCCTTGTTTCCACTCAGGTTGGGAAGCGTCTTCGGCACCTCACTAAACACCCCAAGAAGAAAATACAGGAGCATGCTTCTGACCTGATTGAGATGTGGAAGGAAATAGTAATCAAGGAGACTAATAAGAATAAGAAAAATGGAAATGCCAGCAGTAAAGATTCACCTAAAATTGGTTCTCCCAGTGCAGAGTCAGTTAAAGTGGAGAAGTTTCAAAAATCATCTTCCATGAAGGTTGAGAGAGTTTCCAAGGTCGAGCAATTTGATAGAAATGGTGCCACAAGCTCCGTAAAATATTCCAGATCGGAAAGCACGGTCTCGGAGAGAAACTCTATCAAGGTTGAGAAAACCGATTCAGTGGTCAAGGTTGAAAGGATTGTTAAAGAAGAGAAGAAACCATCAAGTGGCGCTGCTGCACCTCCAAAACTTACTTCCATGATTAAATCAAAAGATGCTGCTCGAGACAAAATAAGAGAACTTCTCTTCGAGGCTTTCTCCAAAGTTCCTGGTGAGGCTGATGAAGATGTTATGGATGAAGTTAATGCAAGCGATCCCATCCGTGTTGCTGTTTCTGTAGAATCCGTGATGTTTGAAAATTGGGGAGGTTCTACGGGTGCACAGAAGGCCAAGTATAGATCTATAATGTTTAACCTCAAGGATCCGAAGAACCCAGACTTTCGAAGAAAAGTTCTTCTAGGACTTATAAAGCCAGAAAGGATGATCAATATGAGCACAGCCGATATGGCAAGCGATCAGAGAAAACGTGAAAATGAAGAGATTGCACAAAAAGCTTTATTCGATTGTGAGCGTGGAGGAGCACCAAAAGCTACTACCGATCAATTCAAGTGTGGTCGATGCGGTCAGCGCAAAACAACCTACTATCAATTACAGACGCGGAGTGCGGATGAACCTATGACGACCTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTCTGCTGAGTCTATTTTGAGATGCTGAAAATGTTATTGTTTGGAACAATCTACTGAGCAATTAGTGTTATTTTGCCCTGACATTGGTTGCTGCAGTTTGTAATCTCGTTCCACATTGTTACATTTAGAACGTAGGAGCTTCTCTATTGTAGGATGTCTTAAGTGCCAATTTATTAAGAAATTCAGTGTATAAACTTTTTTATTTGTTATTTTCTTTGGTACTTTTACGAGTTTTCATACACTTGCAAGGATCTCTTTAACTCAACGTTCAACATTAACTGTTTGTTAGCATTATGAGATCTGATTTTGACTGTAATGAATTTCTTTTTATTATT

Coding sequence (CDS)

ATGGAGAATGAGCTGGTGGAATTGTTTGAAGCGGCGAAGAAGGCTGCAGATGCCGCTGCAGCACCATCAAATGATGGGGGAGCCGAAGAAAGTCGTTGCCTTGATGCCCTAAGGCAGCTTAAGAAGTTTCCTGTTACTTATCAAATCCTTGTTTCCACTCAGGTTGGGAAGCGTCTTCGGCACCTCACTAAACACCCCAAGAAGAAAATACAGGAGCATGCTTCTGACCTGATTGAGATGTGGAAGGAAATAGTAATCAAGGAGACTAATAAGAATAAGAAAAATGGAAATGCCAGCAGTAAAGATTCACCTAAAATTGGTTCTCCCAGTGCAGAGTCAGTTAAAGTGGAGAAGTTTCAAAAATCATCTTCCATGAAGGTTGAGAGAGTTTCCAAGGTCGAGCAATTTGATAGAAATGGTGCCACAAGCTCCGTAAAATATTCCAGATCGGAAAGCACGGTCTCGGAGAGAAACTCTATCAAGGTTGAGAAAACCGATTCAGTGGTCAAGGTTGAAAGGATTGTTAAAGAAGAGAAGAAACCATCAAGTGGCGCTGCTGCACCTCCAAAACTTACTTCCATGATTAAATCAAAAGATGCTGCTCGAGACAAAATAAGAGAACTTCTCTTCGAGGCTTTCTCCAAAGTTCCTGGTGAGGCTGATGAAGATGTTATGGATGAAGTTAATGCAAGCGATCCCATCCGTGTTGCTGTTTCTGTAGAATCCGTGATGTTTGAAAATTGGGGAGGTTCTACGGGTGCACAGAAGGCCAAGTATAGATCTATAATGTTTAACCTCAAGGATCCGAAGAACCCAGACTTTCGAAGAAAAGTTCTTCTAGGACTTATAAAGCCAGAAAGGATGATCAATATGAGCACAGCCGATATGGCAAGCGATCAGAGAAAACGTGAAAATGAAGAGATTGCACAAAAAGCTTTATTCGATTGTGAGCGTGGAGGAGCACCAAAAGCTACTACCGATCAATTCAAGTGTGGTCGATGCGGTCAGCGCAAAACAACCTACTATCAATTACAGACGCGGAGTGCGGATGAACCTATGACGACCTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTCTGCTGA

Protein sequence

MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQKSSSMKVERVSKVEQFDRNGATSSVKYSRSESTVSERNSIKVEKTDSVVKVERIVKEEKKPSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC

Homology

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BLAST of PI0000338 vs. ExPASy Swiss-Prot
Match: Q9ZVH8 (Transcription elongation factor TFIIS OS=Arabidopsis thaliana OX=3702 GN=TFIIS PE=1 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 5.8e-107
Identity = 215/380 (56.58%), Postives = 266/380 (70.00%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAAAPS-NDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 60
           ME++L++LFE AKKAADAAA       G E S+C+DAL+QLKKFPVTY  LV+TQVGK+L
Sbjct: 1   MESDLIDLFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKL 60

Query: 61  RHLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAES------ 120
           R L KHP + I+  A+DL+E+WK++VI+ET K KK    +     K+     E       
Sbjct: 61  RSLAKHPVEDIKSVATDLLEIWKKVVIEETAKAKKTEGTNGCKEAKVNKMDVEKPSNPAP 120

Query: 121 VKVEKFQKSSSMKVERVSKVEQFDRNGATSSVKYSRSESTVSERNSIKVEKTDSVVKVER 180
           VKV+K Q+  S K  +V + E    N   + VK  R    +   N  K++     VK E+
Sbjct: 121 VKVQKLQRGDSAKSIKVERKE--PDNKVVTGVKIERKVPDIKVTNGTKIDYRGQAVKDEK 180

Query: 181 IVKEE----KKPSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVN 240
           + K+     K P+  A APPKLT+M+K  D  RDKIRELL EA  +V GEAD+   + VN
Sbjct: 181 VSKDNQSSMKAPAKAANAPPKLTAMLKCNDPVRDKIRELLVEALCRVAGEADDYERESVN 240

Query: 241 ASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMI 300
           ASDP+RVAVSVES+MFE  G STGAQK KYRSIMFNL+D  NPD RR+VL G I PE++I
Sbjct: 241 ASDPLRVAVSVESLMFEKLGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPEKLI 300

Query: 301 NMSTADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSA 360
            +S  DMASD+RK+EN +I +KALFDCERG A KA+TDQFKCGRCGQRK TYYQ+QTRSA
Sbjct: 301 TLSAEDMASDKRKQENNQIKEKALFDCERGLAAKASTDQFKCGRCGQRKCTYYQMQTRSA 360

Query: 361 DEPMTTFVTCVNCNNHWKFC 370
           DEPMTT+VTCVNC+NHWKFC
Sbjct: 361 DEPMTTYVTCVNCDNHWKFC 378

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BLAST of PI0000338 vs. ExPASy Swiss-Prot
Match: P20232 (Transcription elongation factor S-II OS=Drosophila melanogaster OX=7227 GN=TfIIS PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.4e-28
Identity = 105/364 (28.85%), Postives = 159/364 (43.68%), Query Frame = 0


Query: 7   ELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKHP 66
           E+F   KK +  A+      G  + + LD L+ L+   +   IL  T++G  +  L K  
Sbjct: 6   EVFRIQKKMSKMAS-----DGTGQDQALDLLKALQTLNINLDILTKTRIGMTVNELRKSS 65

Query: 67  K-KKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQKSSSM 126
           K  ++   A  LI+ WK  +           N+S+K+     S +++S    K   S S 
Sbjct: 66  KDDEVIALAKTLIKNWKRFLASPAPTTP--NNSSAKEGSSNNSSASKSTSAAKSSSSISG 125

Query: 127 KVERVSKVEQFDRNGATSSVKYSRSESTVSERNSIKVEKTDSVVKVERIVKEEKKPSSGA 186
           K          D++ ++SS K    + + S                     +   PS G 
Sbjct: 126 K----------DKSSSSSSSKDKEKKGSTSS-------------------SQTSFPSGGM 185

Query: 187 AAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMF 246
                        DA R K RE+L  A     GE  E         +P  +A  +E  ++
Sbjct: 186 T------------DAVRIKCREMLATALK--IGEVPE------GCGEPEEMAAELEDAIY 245

Query: 247 ENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQRKREN 306
             +  +    K + RS + NLKDPKNP  R   + G +  +++  M+  +MASD+ K+  
Sbjct: 246 SEFNNTDMKYKNRIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMASDEMKKLR 305

Query: 307 EEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNH 366
           E+  ++A+ D +        TD  KC +C +R  TY QLQTRSADEPMTTFV C  C N 
Sbjct: 306 EKFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNR 313

Query: 367 WKFC 370
           WKFC
Sbjct: 366 WKFC 313

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BLAST of PI0000338 vs. ExPASy Swiss-Prot
Match: Q2KI09 (Transcription elongation factor A protein 3 OS=Bos taurus OX=9913 GN=TCEA3 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.2e-28
Identity = 109/367 (29.70%), Postives = 175/367 (47.68%), Query Frame = 0


Query: 7   ELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKH- 66
           EL   AKK     A    +G       LD L++L  + ++ Q+L +T++G  +  + KH 
Sbjct: 6   ELLRIAKKLEKMVARKKTEG------ALDLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHC 65

Query: 67  PKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQKSSSM 126
             K++   A  LI  WK+++        + G    K   K      + +    ++  +S+
Sbjct: 66  SNKEVVALAKVLIRNWKQLLDSPATPKGEKGEERVKAKKK-----EKGLDCSDWKPETSL 125

Query: 127 KVERVSKVEQ-FDRNGATSSVKYSRSESTVSERNSIKVEKTDSVVKVERIVKEEKKPSSG 186
              R  +VE+  DR  +      S+S +T S +    +E+++S        +    PSS 
Sbjct: 126 SPPRKKRVEEPKDRRDSVD----SKSSATSSPKRP-SMERSNSSKSKAETPRTPSSPSSP 185

Query: 187 AAAPP--KLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVAVSVES 246
             AP    L     + D+ RDK  E+L  A      +AD+D  D     D  ++A  +E 
Sbjct: 186 TFAPSVCLLAPCYLTGDSVRDKCVEMLSAAL-----KADDDYKDYGVNCD--KMASEIED 245

Query: 247 VMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQRK 306
            +++    +    + + RS + NLKDP+NP  RR VL G I    +  M+  +MASD+ +
Sbjct: 246 HIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELR 305

Query: 307 RENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 366
                + Q+A+ + +       TTD F+C +C ++  TY Q+QTRSADEPMTTFV C  C
Sbjct: 306 ELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNEC 349

Query: 367 NNHWKFC 370
            N WKFC
Sbjct: 366 GNRWKFC 349

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BLAST of PI0000338 vs. ExPASy Swiss-Prot
Match: P23881 (Transcription elongation factor A protein 3 OS=Mus musculus OX=10090 GN=Tcea3 PE=1 SV=3)

HSP 1 Score: 122.9 bits (307), Expect = 7.8e-27
Identity = 108/369 (29.27%), Postives = 172/369 (46.61%), Query Frame = 0


Query: 7   ELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKH- 66
           EL   AKK     +    +G       LD L++L    ++ Q+L +T++G  +  + KH 
Sbjct: 6   ELLRIAKKLEKMVSRKKTEG------ALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHC 65

Query: 67  PKKKIQEHASDLIEMWKEIV-IKETNKNKKNGNASSKDSPKIGSP--SAESVKVEKFQKS 126
             K++   A  LI+ WK ++    T K ++     +K    +G      E+      +K 
Sbjct: 66  SDKEVVSLAKVLIKNWKRLLDSPRTTKGEREEREKAKKEKGLGCSDWKPEAGLSPPRKKG 125

Query: 127 SSMKVERVSKVEQFDRNGATSSVKYSRSESTVSERNSIKVEKTDSVVKVERIVKEEKKPS 186
                 R   V+   R+  TSS K    E + S ++ ++   T S             PS
Sbjct: 126 GGEPKTRRDSVD--SRSSTTSSPKRPSLERSNSSKSKVETPTTPS------------SPS 185

Query: 187 SGAAAPP--KLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVAVSV 246
           +   AP    L     + D+ RDK  E+L  A      +A+++  D     D  ++A  +
Sbjct: 186 TPTFAPAVCLLAPCYLTGDSVRDKCVEMLSAAL-----KAEDNFKDYGVNCD--KLASEI 245

Query: 247 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ 306
           E  +++    +    + + RS + NLKDP+NP  RR VL G I PE +  M+  +MASD+
Sbjct: 246 EDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISPELIAKMTAEEMASDE 305

Query: 307 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 366
            +     + Q+A+ + +       TTD  +C +C ++  TY Q+QTRSADEPMTTFV C 
Sbjct: 306 LRELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLCN 347

Query: 367 NCNNHWKFC 370
            C N WKFC
Sbjct: 366 ECGNRWKFC 347

[Close]

BLAST of PI0000338 vs. ExPASy Swiss-Prot
Match: P52652 (Putative transcription elongation factor S-II OS=Caenorhabditis elegans OX=6239 GN=T24H10.1 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.0e-26
Identity = 99/349 (28.37%), Postives = 160/349 (45.85%), Query Frame = 0


Query: 24  NDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKH-PKKKIQEHASDLIEMWK 83
           N+G     +C   L QL K P++ +I+  T +G ++  + K      + + A ++I+ WK
Sbjct: 19  NNGMESVEQCNKLLDQLSKIPMSIEIIQKTNIGIKVNMMRKKVTDDAVAKRAKNIIKDWK 78

Query: 84  EIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQKSSSMKVERVSKVEQFDRNGAT 143
            +V         +G + S+D    G+P A+  + E  +++   K     K+E        
Sbjct: 79  NVV---------DGKSKSQDDG--GAPPAKKHRKESVEEAKPEK----KKIE-------- 138

Query: 144 SSVKYSRSESTVSERNSIKVEKTDSVVKVERIVKEEKKPSSGAAAPPKLTSMIKSKDAAR 203
               Y R E   S R  I  +                   + A+ PPK        D  R
Sbjct: 139 --APYKRPEP--SSRPEIVAQ------------------FASASFPPKHL----ENDETR 198

Query: 204 DKIRELLFEA--FSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGAQKAKYR 263
            K  +LL  A  F  +P              DP  +AV +E  ++     +  +  A  R
Sbjct: 199 LKSAQLLLSALRFGDMP----------QGTLDPEELAVQIEEKLYSVHRDTNKSYSAAVR 258

Query: 264 SIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQRKRENEEIAQKALFDCERGG 323
           S +FNL+D KN   R  VL G+++ E+   M++ +MAS + +   ++  ++A+ + +   
Sbjct: 259 SRIFNLRDKKNLALRENVLTGVVRAEKFATMTSEEMASAEIREMRDKFTKEAILEHQMSV 308

Query: 324 APKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 370
                +D FKCG+CG++  TY QLQTRS+DEPMTTFV C+ C N WKFC
Sbjct: 319 QQGTPSDMFKCGKCGKKNCTYTQLQTRSSDEPMTTFVFCLECGNRWKFC 308

[Close]

BLAST of PI0000338 vs. ExPASy TrEMBL
Match: A0A0A0KDH9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014610 PE=4 SV=1)

HSP 1 Score: 696.4 bits (1796), Expect = 6.3e-197
Identity = 362/369 (98.10%), Postives = 367/369 (99.46%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
           HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120

Query: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSRSESTVSERNSIKVEKTDSVVKVERIVKEEKK 180
           KSSSMKVERVSKVEQFDRNGATSSVKYS+SES VSERNS+KVEKTDS+VKVER+VKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTDSMVKVERVVKEEKK 180

Query: 181 PSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVAVSV 240
           PSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADE+ MDEVNASDPIRVAVSV
Sbjct: 181 PSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSV 240

Query: 241 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ 300
           ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ
Sbjct: 241 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ 300

Query: 301 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 360
           RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV
Sbjct: 301 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 360

Query: 361 NCNNHWKFC 370
           NCNNHWKFC
Sbjct: 361 NCNNHWKFC 369

[Close]

BLAST of PI0000338 vs. ExPASy TrEMBL
Match: A0A5A7U9K1 (Transcription elongation factor TFIIS OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002160 PE=4 SV=1)

HSP 1 Score: 691.8 bits (1784), Expect = 1.5e-195
Identity = 359/369 (97.29%), Postives = 365/369 (98.92%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
           HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPS ESVKVEKFQ
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSVESVKVEKFQ 120

Query: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSRSESTVSERNSIKVEKTDSVVKVERIVKEEKK 180
           KSSSMKVERVSKVEQFDRNGATSSVKYSRSES VS+ +S+K EKTDSVVKVERIVKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSRSESAVSDSSSVKFEKTDSVVKVERIVKEEKK 180

Query: 181 PSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVAVSV 240
           PSSGAAAPPKLTSM+KSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVA+SV
Sbjct: 181 PSSGAAAPPKLTSMVKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVAISV 240

Query: 241 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ 300
           ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINM+TADMASDQ
Sbjct: 241 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMTTADMASDQ 300

Query: 301 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 360
           RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV
Sbjct: 301 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 360

Query: 361 NCNNHWKFC 370
           NCNNHWKFC
Sbjct: 361 NCNNHWKFC 369

[Close]

BLAST of PI0000338 vs. ExPASy TrEMBL
Match: A0A1S3C448 (transcription elongation factor TFIIS OS=Cucumis melo OX=3656 GN=LOC103496629 PE=4 SV=1)

HSP 1 Score: 691.8 bits (1784), Expect = 1.5e-195
Identity = 359/369 (97.29%), Postives = 365/369 (98.92%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
           HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPS ESVKVEKFQ
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSVESVKVEKFQ 120

Query: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSRSESTVSERNSIKVEKTDSVVKVERIVKEEKK 180
           KSSSMKVERVSKVEQFDRNGATSSVKYSRSES VS+ +S+K EKTDSVVKVERIVKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSRSESAVSDSSSVKFEKTDSVVKVERIVKEEKK 180

Query: 181 PSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVAVSV 240
           PSSGAAAPPKLTSM+KSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVA+SV
Sbjct: 181 PSSGAAAPPKLTSMVKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVAISV 240

Query: 241 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ 300
           ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINM+TADMASDQ
Sbjct: 241 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMTTADMASDQ 300

Query: 301 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 360
           RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV
Sbjct: 301 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 360

Query: 361 NCNNHWKFC 370
           NCNNHWKFC
Sbjct: 361 NCNNHWKFC 369

[Close]

BLAST of PI0000338 vs. ExPASy TrEMBL
Match: A0A6J1BWY6 (transcription elongation factor TFIIS OS=Momordica charantia OX=3673 GN=LOC111006416 PE=4 SV=1)

HSP 1 Score: 652.9 bits (1683), Expect = 8.0e-184
Identity = 343/377 (90.98%), Postives = 357/377 (94.69%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
           HLTKHPKKKIQ++ASDLIEMWKEIVIKETNKNKKNGN + K+SPKIGSPSAESVKVEKFQ
Sbjct: 61  HLTKHPKKKIQDYASDLIEMWKEIVIKETNKNKKNGNGNCKESPKIGSPSAESVKVEKFQ 120

Query: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSRSESTVSERNSIKVEKTDSV--VKVERIVKEE 180
           KSSSMKVERVSKVEQ DRNG TSSVKYSRSES +SE+N +KVEKTDS+  VK ER+VKEE
Sbjct: 121 KSSSMKVERVSKVEQSDRNGTTSSVKYSRSESVISEKNIVKVEKTDSLEKVKAERVVKEE 180

Query: 181 KK------PSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASD 240
           KK      PSSG AAPPKLTSMIKSKDAARDKIRELL EAFSKVPGEADEDV+DEVNASD
Sbjct: 181 KKISIDKRPSSGTAAPPKLTSMIKSKDAARDKIRELLCEAFSKVPGEADEDVIDEVNASD 240

Query: 241 PIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMS 300
           P+RVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRR VL+G IKPER+INMS
Sbjct: 241 PVRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRNVLVGHIKPERLINMS 300

Query: 301 TADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEP 360
           TA+MASDQRKRENEEI QKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEP
Sbjct: 301 TAEMASDQRKRENEEIEQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEP 360

Query: 361 MTTFVTCVNCNNHWKFC 370
           MTTFVTCVNCNNHWKFC
Sbjct: 361 MTTFVTCVNCNNHWKFC 377

[Close]

BLAST of PI0000338 vs. ExPASy TrEMBL
Match: A0A6J1FF11 (transcription elongation factor TFIIS-like OS=Cucurbita moschata OX=3662 GN=LOC111444888 PE=4 SV=1)

HSP 1 Score: 651.7 bits (1680), Expect = 1.8e-183
Identity = 341/375 (90.93%), Postives = 354/375 (94.40%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
           HLTKHPKKKIQ +ASDLIE+WKEIVIK+TNKNKKNGN   ++SPKIGSPSAESVKVEKF+
Sbjct: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFR 120

Query: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSRSESTVSERNSIKVEKTDSVVKVERIVKE--- 180
           KSSSMKVERVS+VEQFDRNG TSS K+SRSES +S +N +KVEKTDSVVKVERIVKE   
Sbjct: 121 KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIVKEEKR 180

Query: 181 ---EKKPSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPI 240
              EKKPSSG  APPKLTSMIKSKDAARDKIRELLFEAFSKVP EADEDVMDEVNASDPI
Sbjct: 181 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 240

Query: 241 RVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTA 300
           RVAVSVESVMFENWGGSTG+QK KYRSIMFNLKDPKNPDFRRKVLLGLIKPER+INMSTA
Sbjct: 241 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 300

Query: 301 DMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360
           DMASDQRKRENEEI QKALFDCER GAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT
Sbjct: 301 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360

Query: 361 TFVTCVNCNNHWKFC 370
           TFVTCVNCNNHWKFC
Sbjct: 361 TFVTCVNCNNHWKFC 375

[Close]

BLAST of PI0000338 vs. NCBI nr
Match: XP_004138392.1 (transcription elongation factor TFIIS [Cucumis sativus] >KGN45841.1 hypothetical protein Csa_005416 [Cucumis sativus])

HSP 1 Score: 696.4 bits (1796), Expect = 1.3e-196
Identity = 362/369 (98.10%), Postives = 367/369 (99.46%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
           HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120

Query: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSRSESTVSERNSIKVEKTDSVVKVERIVKEEKK 180
           KSSSMKVERVSKVEQFDRNGATSSVKYS+SES VSERNS+KVEKTDS+VKVER+VKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTDSMVKVERVVKEEKK 180

Query: 181 PSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVAVSV 240
           PSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADE+ MDEVNASDPIRVAVSV
Sbjct: 181 PSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSV 240

Query: 241 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ 300
           ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ
Sbjct: 241 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ 300

Query: 301 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 360
           RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV
Sbjct: 301 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 360

Query: 361 NCNNHWKFC 370
           NCNNHWKFC
Sbjct: 361 NCNNHWKFC 369

[Close]

BLAST of PI0000338 vs. NCBI nr
Match: XP_008456781.1 (PREDICTED: transcription elongation factor TFIIS [Cucumis melo] >KAA0051978.1 transcription elongation factor TFIIS [Cucumis melo var. makuwa] >TYK04579.1 transcription elongation factor TFIIS [Cucumis melo var. makuwa])

HSP 1 Score: 691.8 bits (1784), Expect = 3.2e-195
Identity = 359/369 (97.29%), Postives = 365/369 (98.92%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
           HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPS ESVKVEKFQ
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSVESVKVEKFQ 120

Query: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSRSESTVSERNSIKVEKTDSVVKVERIVKEEKK 180
           KSSSMKVERVSKVEQFDRNGATSSVKYSRSES VS+ +S+K EKTDSVVKVERIVKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSRSESAVSDSSSVKFEKTDSVVKVERIVKEEKK 180

Query: 181 PSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVAVSV 240
           PSSGAAAPPKLTSM+KSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVA+SV
Sbjct: 181 PSSGAAAPPKLTSMVKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVAISV 240

Query: 241 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ 300
           ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINM+TADMASDQ
Sbjct: 241 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMTTADMASDQ 300

Query: 301 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 360
           RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV
Sbjct: 301 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 360

Query: 361 NCNNHWKFC 370
           NCNNHWKFC
Sbjct: 361 NCNNHWKFC 369

[Close]

BLAST of PI0000338 vs. NCBI nr
Match: XP_038884917.1 (transcription elongation factor TFIIS [Benincasa hispida])

HSP 1 Score: 673.3 bits (1736), Expect = 1.2e-189
Identity = 353/375 (94.13%), Postives = 359/375 (95.73%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELF+AAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFQAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
           HLTKHPKKKIQE+ASDL+EMWKEIVIKETNKNKKNGN + KDSPKIGSPSAESVKVEKFQ
Sbjct: 61  HLTKHPKKKIQEYASDLVEMWKEIVIKETNKNKKNGNGNCKDSPKIGSPSAESVKVEKFQ 120

Query: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSRSESTVSERNSIKVEKTDSVVKVERIVKEE-- 180
           KSSSMKVERVSKVEQFD+NGAT SVKYSR ES VSERNS+KVEKTDS VKVE  VKEE  
Sbjct: 121 KSSSMKVERVSKVEQFDKNGATGSVKYSRLESAVSERNSVKVEKTDSAVKVEGTVKEERR 180

Query: 181 ----KKPSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPI 240
               KKPS G AAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPI
Sbjct: 181 ISIDKKPSGGTAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPI 240

Query: 241 RVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTA 300
           RVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTA
Sbjct: 241 RVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTA 300

Query: 301 DMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360
           DMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT
Sbjct: 301 DMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360

Query: 361 TFVTCVNCNNHWKFC 370
           TFVTCVNCNNHWKFC
Sbjct: 361 TFVTCVNCNNHWKFC 375

[Close]

BLAST of PI0000338 vs. NCBI nr
Match: XP_023531955.1 (transcription elongation factor TFIIS-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 656.8 bits (1693), Expect = 1.1e-184
Identity = 345/374 (92.25%), Postives = 357/374 (95.45%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           ME ELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MEKELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
           HLTKHPKKKIQ++ASDLIEMWK+IVIKETNKNKKNGN +SK++ KIGSPSAESVKVE  Q
Sbjct: 61  HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGNSKETSKIGSPSAESVKVENLQ 120

Query: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSRSESTVSERNSIKVEKTDSVVKVERIVKEEKK 180
           KSSSMKVERVSKVEQFDRNG+TSSVKYSRS S VSE+NS+KVEKTDSVVKVER+VKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFDRNGSTSSVKYSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKK 180

Query: 181 PS-----SGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIR 240
            S     SGAA PPKLTSMIKSKDAARDKIRELL EAFSKVPGEADEDVMDEVNASDPIR
Sbjct: 181 ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIR 240

Query: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTAD 300
           VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERM N+ST D
Sbjct: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD 300

Query: 301 MASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360
           MASDQRKRENEEIAQKALF+CERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT
Sbjct: 301 MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360

Query: 361 FVTCVNCNNHWKFC 370
           FVTCVNCNNHWKFC
Sbjct: 361 FVTCVNCNNHWKFC 374

[Close]

BLAST of PI0000338 vs. NCBI nr
Match: KAG6578486.1 (Transcription elongation factor TFIIS, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 656.4 bits (1692), Expect = 1.5e-184
Identity = 344/375 (91.73%), Postives = 355/375 (94.67%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
           HLTKHPKKKIQ +ASDLIE+WKEIVIKETNKNKKNGN   K+SPKIGSPSAESVKVEKF+
Sbjct: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKFR 120

Query: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSRSESTVSERNSIKVEKTDSVVKVERIVKE--- 180
           KSSSMKVERVS+VEQFDRNG TSS K+SRSES +S +NS+KVEKTDSVVKVERIVKE   
Sbjct: 121 KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNSVKVEKTDSVVKVERIVKEEKR 180

Query: 181 ---EKKPSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPI 240
              EKKPSSG  APPKLTSMIKSKDAARDKIRELLFEAFSKVP EADEDVMDEVNASDPI
Sbjct: 181 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 240

Query: 241 RVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTA 300
           RVAVSVESVMFENWGGSTG+QK KYRSIMFNLKDPKNPDFRRKVLLGLIKPER+INMSTA
Sbjct: 241 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 300

Query: 301 DMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360
           DMASDQRKRENEEI QKALFDCER GAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT
Sbjct: 301 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360

Query: 361 TFVTCVNCNNHWKFC 370
           TFVTCVNCNNHWKFC
Sbjct: 361 TFVTCVNCNNHWKFC 375

[Close]

BLAST of PI0000338 vs. TAIR 10
Match: AT2G38560.1 (transcript elongation factor IIS )

HSP 1 Score: 389.0 bits (998), Expect = 4.1e-108
Identity = 215/380 (56.58%), Postives = 266/380 (70.00%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAAAPS-NDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 60
           ME++L++LFE AKKAADAAA       G E S+C+DAL+QLKKFPVTY  LV+TQVGK+L
Sbjct: 1   MESDLIDLFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKL 60

Query: 61  RHLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAES------ 120
           R L KHP + I+  A+DL+E+WK++VI+ET K KK    +     K+     E       
Sbjct: 61  RSLAKHPVEDIKSVATDLLEIWKKVVIEETAKAKKTEGTNGCKEAKVNKMDVEKPSNPAP 120

Query: 121 VKVEKFQKSSSMKVERVSKVEQFDRNGATSSVKYSRSESTVSERNSIKVEKTDSVVKVER 180
           VKV+K Q+  S K  +V + E    N   + VK  R    +   N  K++     VK E+
Sbjct: 121 VKVQKLQRGDSAKSIKVERKE--PDNKVVTGVKIERKVPDIKVTNGTKIDYRGQAVKDEK 180

Query: 181 IVKEE----KKPSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVN 240
           + K+     K P+  A APPKLT+M+K  D  RDKIRELL EA  +V GEAD+   + VN
Sbjct: 181 VSKDNQSSMKAPAKAANAPPKLTAMLKCNDPVRDKIRELLVEALCRVAGEADDYERESVN 240

Query: 241 ASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMI 300
           ASDP+RVAVSVES+MFE  G STGAQK KYRSIMFNL+D  NPD RR+VL G I PE++I
Sbjct: 241 ASDPLRVAVSVESLMFEKLGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPEKLI 300

Query: 301 NMSTADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSA 360
            +S  DMASD+RK+EN +I +KALFDCERG A KA+TDQFKCGRCGQRK TYYQ+QTRSA
Sbjct: 301 TLSAEDMASDKRKQENNQIKEKALFDCERGLAAKASTDQFKCGRCGQRKCTYYQMQTRSA 360

Query: 361 DEPMTTFVTCVNCNNHWKFC 370
           DEPMTT+VTCVNC+NHWKFC
Sbjct: 361 DEPMTTYVTCVNCDNHWKFC 378

[Close]

BLAST of PI0000338 vs. TAIR 10
Match: AT2G42730.1 (F-box family protein )

HSP 1 Score: 104.0 bits (258), Expect = 2.7e-22
Identity = 59/127 (46.46%), Postives = 80/127 (62.99%), Query Frame = 0


Query: 189 PKLTSMIKSKDAARDKIRELLFEAFSKVPGE-ADEDVMDEVNASDPIRVAVSVESVMFEN 248
           P  ++M K+ D+ RDK+RE+L  +  KV  E  D ++   V A DP  VAVSVES MFE 
Sbjct: 594 PTHSTMKKTGDSKRDKVREILQTSLVKVASEIVDTEMKTRVTACDPSVVAVSVESAMFEK 653

Query: 249 WGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQRKRENEE 308
            G   G  KAKYRSI+FN+ D  NPD RRKVL+G I  ER++ M   +M S++ ++E + 
Sbjct: 654 LGCFMGPHKAKYRSILFNMGDSNNPDLRRKVLIGEINGERLVTMERQEMGSEKIQKEVQR 713

Query: 309 IAQKALF 315
           I + A F
Sbjct: 714 IKENARF 720

[Close]

BLAST of PI0000338 vs. TAIR 10
Match: AT4G18720.1 (Transcription factor IIS protein )

HSP 1 Score: 100.1 bits (248), Expect = 3.8e-21
Identity = 60/125 (48.00%), Postives = 79/125 (63.20%), Query Frame = 0


Query: 176 KEEKKPSSGAAAP-PKLTSMIKSKDAARDKIRELLFEAFSKVPGE-ADEDVMDEVNASDP 235
           +E+ + +  AA   P   +M K+ D+ RDK+RE+L  + +KV  E  D ++   V A DP
Sbjct: 91  REKSRDNREAAVKIPTHATMKKTGDSKRDKVREILQTSLAKVASEVVDTEMKTRVTACDP 150

Query: 236 IRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMST 295
             VAVSVE+ MFEN G   G QKAKYRSI+FN+ D  NPD RRKVLLG I  ER++ M  
Sbjct: 151 WVVAVSVETAMFENLGCFMGPQKAKYRSILFNMGDSNNPDLRRKVLLGEISGERLVKMEK 210

Query: 296 ADMAS 299
            +M S
Sbjct: 211 EEMGS 215

[Close]

BLAST of PI0000338 vs. TAIR 10
Match: AT5G42325.1 (Transcription factor IIS protein )

HSP 1 Score: 69.7 bits (169), Expect = 5.5e-12
Identity = 48/141 (34.04%), Postives = 74/141 (52.48%), Query Frame = 0


Query: 176 KEEKKPSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDE--VNASDP 235
           +E+ +        P  ++M K+ D+ RDK+ E+L  + +KV  E  +  M    +   DP
Sbjct: 91  REKSRDRETPVKIPTHSTMKKTGDSKRDKVHEILQSSLAKVATEVVDTEMKRRVMTVCDP 150

Query: 236 IRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMST 295
             VAVSVES M                SI+FN+ D  NPD RRKVL+G I  ER++ M  
Sbjct: 151 WVVAVSVESAM----------------SILFNMGDSNNPDLRRKVLIGEISGERLVKMEK 210

Query: 296 ADMASDQRKRENEEIAQKALF 315
            +M S++ ++E + I ++A F
Sbjct: 211 DEMGSEKIQKEVQRIKERARF 215

[Close]

BLAST of PI0000338 vs. TAIR 10
Match: AT5G25520.1 (SPOC domain / Transcription elongation factor S-II protein )

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-09
Identity = 33/83 (39.76%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 232 DPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINM 291
           DP  +A  +E  +F+ +GG     K K RS++FNLKD  NP+ R  V+ G I PER+ NM
Sbjct: 359 DPELLASKIELELFKLFGGVNKKYKEKGRSLLFNLKDKNNPELRESVMSGKISPERLCNM 418

Query: 292 STADMASDQ----RKRENEEIAQ 311
           +  ++AS +    R+ + EE+A+
Sbjct: 419 TAEELASKELSQWRQAKAEEMAE 441

The following BLAST results are available for this feature:

BLAST of PI0000338 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVH8	5.8e-107	56.58	Transcription elongation factor TFIIS OS=Arabidopsis thaliana OX=3702 GN=TFIIS P...	[more]
P20232	2.4e-28	28.85	Transcription elongation factor S-II OS=Drosophila melanogaster OX=7227 GN=TfIIS...	[more]
Q2KI09	3.2e-28	29.70	Transcription elongation factor A protein 3 OS=Bos taurus OX=9913 GN=TCEA3 PE=2 ...	[more]
P23881	7.8e-27	29.27	Transcription elongation factor A protein 3 OS=Mus musculus OX=10090 GN=Tcea3 PE...	[more]
P52652	1.0e-26	28.37	Putative transcription elongation factor S-II OS=Caenorhabditis elegans OX=6239 ...	[more]

BLAST of PI0000338 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDH9	6.3e-197	98.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014610 PE=4 SV=1	[more]
A0A5A7U9K1	1.5e-195	97.29	Transcription elongation factor TFIIS OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3C448	1.5e-195	97.29	transcription elongation factor TFIIS OS=Cucumis melo OX=3656 GN=LOC103496629 PE...	[more]
A0A6J1BWY6	8.0e-184	90.98	transcription elongation factor TFIIS OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A6J1FF11	1.8e-183	90.93	transcription elongation factor TFIIS-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]

BLAST of PI0000338 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138392.1	1.3e-196	98.10	transcription elongation factor TFIIS [Cucumis sativus] >KGN45841.1 hypothetical...	[more]
XP_008456781.1	3.2e-195	97.29	PREDICTED: transcription elongation factor TFIIS [Cucumis melo] >KAA0051978.1 tr...	[more]
XP_038884917.1	1.2e-189	94.13	transcription elongation factor TFIIS [Benincasa hispida]	[more]
XP_023531955.1	1.1e-184	92.25	transcription elongation factor TFIIS-like [Cucurbita pepo subsp. pepo]	[more]
KAG6578486.1	1.5e-184	91.73	Transcription elongation factor TFIIS, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of PI0000338 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38560.1	4.1e-108	56.58	transcript elongation factor IIS	[more]
AT2G42730.1	2.7e-22	46.46	F-box family protein	[more]
AT4G18720.1	3.8e-21	48.00	Transcription factor IIS protein	[more]
AT5G42325.1	5.5e-12	34.04	Transcription factor IIS protein	[more]
AT5G25520.1	1.2e-09	39.76	SPOC domain / Transcription elongation factor S-II protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003617	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	SMART	SM00509	TFS2_5	coord: 8..87 e-value: 2.2E-24 score: 97.0
IPR003618	Transcription elongation factor S-II, central domain	SMART	SM00510	mid_6	coord: 199..307 e-value: 4.8E-36 score: 135.8
IPR003618	Transcription elongation factor S-II, central domain	PFAM	PF07500	TFIIS_M	coord: 199..315 e-value: 1.1E-31 score: 109.6
IPR003618	Transcription elongation factor S-II, central domain	PROSITE	PS51321	TFIIS_CENTRAL	coord: 201..324 score: 33.614571
IPR001222	Zinc finger, TFIIS-type	SMART	SM00440	Cys4_2	coord: 329..368 e-value: 9.7E-24 score: 94.9
IPR001222	Zinc finger, TFIIS-type	PFAM	PF01096	TFIIS_C	coord: 329..367 e-value: 1.1E-19 score: 70.0
IPR001222	Zinc finger, TFIIS-type	PROSITE	PS00466	ZF_TFIIS_1	coord: 331..366
IPR001222	Zinc finger, TFIIS-type	PROSITE	PS51133	ZF_TFIIS_2	coord: 327..367 score: 14.636859
IPR035100	Transcription elongation factor, IIS-type	PIRSF	PIRSF006704	TFIIS	coord: 2..369 e-value: 9.2E-99 score: 328.8
IPR035441	TFIIS/LEDGF domain superfamily	GENE3D	1.20.930.10	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 1..101 e-value: 4.4E-23 score: 82.8
IPR035441	TFIIS/LEDGF domain superfamily	SUPERFAMILY	47676	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 27..100
None	No IPR available	GENE3D	2.20.25.10		coord: 298..369 e-value: 1.4E-27 score: 97.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..107
None	No IPR available	PANTHER	PTHR11477:SF36	TRANSCRIPTION ELONGATION FACTOR TFIIS	coord: 1..369
None	No IPR available	PANTHER	PTHR11477	TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN	coord: 1..369
None	No IPR available	CDD	cd13749	Zn-ribbon_TFIIS	coord: 322..368 e-value: 4.49846E-30 score: 107.307
None	No IPR available	CDD	cd00183	TFIIS_I	coord: 24..85 e-value: 1.2723E-16 score: 71.9558
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 310..367
IPR036575	Transcription elongation factor S-II, central domain superfamily	GENE3D	1.10.472.30		coord: 173..297 e-value: 8.2E-27 score: 95.7
IPR036575	Transcription elongation factor S-II, central domain superfamily	SUPERFAMILY	46942	Elongation factor TFIIS domain 2	coord: 188..299
IPR006289	Transcription elongation factor, TFIIS	TIGRFAM	TIGR01385	TIGR01385	coord: 12..369 e-value: 3.1E-99 score: 330.4
IPR017923	Transcription factor IIS, N-terminal	PFAM	PF08711	Med26	coord: 36..85 e-value: 3.9E-11 score: 42.8
IPR017923	Transcription factor IIS, N-terminal	PROSITE	PS51319	TFIIS_N	coord: 10..88 score: 20.267712

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0000338.1	PI0000338.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006414	translational elongation
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding