PI0000323 (gene) Melon (PI 482460) v1

Overview


Name	PI0000323
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr11: 5934242 .. 5934925 (+)
RNA-Seq Expression	PI0000323
Synteny	PI0000323

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATTAATCAAACACCAAAGGCCCCTCAAAAAGCCCCAAAACCAAAACCCATTCTCTGCATTCTTTATTCTCTCTCTTTTTGTTCTTCTTTTTCTTTTTTCCTCAATCAAACAACTAAAACCAATTCTTCTTCTTCAACTTCTTCTTCTTCTTCTTGTCAGAGAAATGCAGTCCAAGATTGGATCTCAAGGTCTTCCTCTCTGTATTTCAGCCTTCACTCTCTCAAATCATTCCCTCTCTACTCAGTATTTTCCCTTAACCCTAAACCCAACTTTTCTCTTTCTCTAATTACACAATACACTCCTATTATCACGTTGCTCTGTTTTTTGAGTTGCAGGATAGCAGATCATGATCGAAGAAGGGAAGCCATGAAAACGAGAACGCAAAGATCAAGCAACATGAAAAACAGATTATTGGAAGCGATTAGAGAAGGAGATCTTGAGGATTTCGTCAATGAAATCGACTTCATTATTTGTGCTGCAAAAGCTGCTTAGATTAGGAAAACAGAGTATCCATGATCTGGGTTTGGATTTGATATGTTTTGTTAATTTTGATATGGGTTTGTTTTTTATGTATTGTTCTTGTTTGATATGAAATTGGATTTGTTCTGTTTCATGTACTTTGTAAGAGAGATTGGGAAAAAATTTGACTGATTATGAATGGGAATCTAGAAAAATTCAAGAA

mRNA sequence

GAATTAATCAAACACCAAAGGCCCCTCAAAAAGCCCCAAAACCAAAACCCATTCTCTGCATTCTTTATTCTCTCTCTTTTTGTTCTTCTTTTTCTTTTTTCCTCAATCAAACAACTAAAACCAATTCTTCTTCTTCAACTTCTTCTTCTTCTTCTTGTCAGAGAAATGCAGTCCAAGATTGGATCTCAAGGTCTTCCTCTCTGTATTTCAGCCTTCACTCTCTCAAATCATTCCCTCTCTACTCAGATAGCAGATCATGATCGAAGAAGGGAAGCCATGAAAACGAGAACGCAAAGATCAAGCAACATGAAAAACAGATTATTGGAAGCGATTAGAGAAGGAGATCTTGAGGATTTCGTCAATGAAATCGACTTCATTATTTGTGCTGCAAAAGCTGCTTAGATTAGGAAAACAGAGTATCCATGATCTGGGTTTGGATTTGATATGTTTTGTTAATTTTGATATGGGTTTGTTTTTTATGTATTGTTCTTGTTTGATATGAAATTGGATTTGTTCTGTTTCATGTACTTTGTAAGAGAGATTGGGAAAAAATTTGACTGATTATGAATGGGAATCTAGAAAAATTCAAGAA

Coding sequence (CDS)

ATGCAGTCCAAGATTGGATCTCAAGGTCTTCCTCTCTGTATTTCAGCCTTCACTCTCTCAAATCATTCCCTCTCTACTCAGATAGCAGATCATGATCGAAGAAGGGAAGCCATGAAAACGAGAACGCAAAGATCAAGCAACATGAAAAACAGATTATTGGAAGCGATTAGAGAAGGAGATCTTGAGGATTTCGTCAATGAAATCGACTTCATTATTTGTGCTGCAAAAGCTGCTTAG

Protein sequence

MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSSNMKNRLLEAIREGDLEDFVNEIDFIICAAKAA

Homology

[Close]

BLAST of PI0000323 vs. ExPASy TrEMBL
Match: A0A5D3CSY7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00460 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 9.7e-31
Identity = 73/78 (93.59%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSSNMKNRLLEAIREGD 60
          MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRS+NMK R LEAIREGD
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSNNMKYRYLEAIREGD 60

Query: 61 LEDFVNEIDFIICAAKAA 79
          LEDFVNE DF+ICAAKAA
Sbjct: 61 LEDFVNETDFMICAAKAA 78

[Close]

BLAST of PI0000323 vs. ExPASy TrEMBL
Match: A0A0A0KEP9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G290900 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.3e-30
Identity = 73/78 (93.59%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSSNMKNRLLEAIREGD 60
          MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRT+RSSNMK+RLLEAIREGD
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD 60

Query: 61 LEDFVNEIDFIICAAKAA 79
          LEDFVNE D +ICAAKAA
Sbjct: 61 LEDFVNENDLMICAAKAA 78

[Close]

BLAST of PI0000323 vs. ExPASy TrEMBL
Match: A0A6J1L6A3 (uncharacterized protein LOC111499567 OS=Cucurbita maxima OX=3661 GN=LOC111499567 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.7e-08
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSSN-----MKNRLLEA 60
          M SK+ S GLPLC+S F+LS+ SLST++ DHDRRREAM+ R   S++         +++A
Sbjct: 1  MPSKLVSPGLPLCLSGFSLSHRSLSTEMEDHDRRREAMRRRRSSSADAGGIGFTRYIIQA 60

Query: 61 IREGDLEDFVNEIDFIICAAKAA 79
          I +GDL D   +   +  AAKAA
Sbjct: 61 IGDGDLHDLCEKTK-LTSAAKAA 82

[Close]

BLAST of PI0000323 vs. NCBI nr
Match: KAA0035320.1 (hypothetical protein E6C27_scaffold228G001200 [Cucumis melo var. makuwa] >TYK14318.1 hypothetical protein E5676_scaffold84G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 142.1 bits (357), Expect = 2.0e-30
Identity = 73/78 (93.59%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSSNMKNRLLEAIREGD 60
          MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRS+NMK R LEAIREGD
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSNNMKYRYLEAIREGD 60

Query: 61 LEDFVNEIDFIICAAKAA 79
          LEDFVNE DF+ICAAKAA
Sbjct: 61 LEDFVNETDFMICAAKAA 78

[Close]

BLAST of PI0000323 vs. NCBI nr
Match: KGN47309.1 (hypothetical protein Csa_022984 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 2.6e-30
Identity = 73/78 (93.59%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSSNMKNRLLEAIREGD 60
          MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRT+RSSNMK+RLLEAIREGD
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD 60

Query: 61 LEDFVNEIDFIICAAKAA 79
          LEDFVNE D +ICAAKAA
Sbjct: 61 LEDFVNENDLMICAAKAA 78

[Close]

BLAST of PI0000323 vs. NCBI nr
Match: XP_023006923.1 (uncharacterized protein LOC111499567 [Cucurbita maxima])

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-07
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSSN-----MKNRLLEA 60
          M SK+ S GLPLC+S F+LS+ SLST++ DHDRRREAM+ R   S++         +++A
Sbjct: 1  MPSKLVSPGLPLCLSGFSLSHRSLSTEMEDHDRRREAMRRRRSSSADAGGIGFTRYIIQA 60

Query: 61 IREGDLEDFVNEIDFIICAAKAA 79
          I +GDL D   +   +  AAKAA
Sbjct: 61 IGDGDLHDLCEKTK-LTSAAKAA 82

[Close]

BLAST of PI0000323 vs. NCBI nr
Match: KAG6605527.1 (hypothetical protein SDJN03_02844, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035464.1 hypothetical protein SDJN02_02260 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-06
Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSSN-----MKNRLLEA 60
          M SK+ S GLPLC+S F+LS+  L+T++ DHDRRREAM+ R   S++         +++A
Sbjct: 1  MPSKLVSPGLPLCLSGFSLSHRPLTTEMEDHDRRREAMRRRRSSSADTGGIGFTRYIIQA 60

Query: 61 IREGDLEDFVNEIDFIICAAKAA 79
          I +GDL D   +   +  AAKAA
Sbjct: 61 IGDGDLHDLCEKTK-LTSAAKAA 82

The following BLAST results are available for this feature:

BLAST of PI0000323 vs.


Match Name	E-value	Identity	Description

BLAST of PI0000323 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CSY7	9.7e-31	93.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KEP9	1.3e-30	93.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G290900 PE=4 SV=1	[more]
A0A6J1L6A3	6.7e-08	46.99	uncharacterized protein LOC111499567 OS=Cucurbita maxima OX=3661 GN=LOC111499567...	[more]

BLAST of PI0000323 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035320.1	2.0e-30	93.59	hypothetical protein E6C27_scaffold228G001200 [Cucumis melo var. makuwa] >TYK143...	[more]
KGN47309.1	2.6e-30	93.59	hypothetical protein Csa_022984 [Cucumis sativus]	[more]
XP_023006923.1	1.4e-07	46.99	uncharacterized protein LOC111499567 [Cucurbita maxima]	[more]
KAG6605527.1	1.2e-06	44.58	hypothetical protein SDJN03_02844, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of PI0000323 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 74..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0000323.1	PI0000323.1	mRNA