PI0000285 (gene) Melon (PI 482460) v1

Overview
NamePI0000285
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionPol protein
Locationchr08: 12250413 .. 12250589 (+)
RNA-Seq ExpressionPI0000285
SyntenyPI0000285
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACCCTTATCCAACAACTCTTGCAACTGGACCTTCAATTCCTTCAACTCTGCTGGAGCCATTCTGTACGGAGCTCTAGAGATAGGGGCAGTACCTGGCTCTAGCTCAATAGCAAAGTCAACCTCTCTGACTGGAGGCAGACCTGGAAGCTCCTCAGGAAAAACATCTGGGTAG

mRNA sequence

ATGAAACCCTTATCCAACAACTCTTGCAACTGGACCTTCAATTCCTTCAACTCTGCTGGAGCCATTCTGTACGGAGCTCTAGAGATAGGGGCAGTACCTGGCTCTAGCTCAATAGCAAAGTCAACCTCTCTGACTGGAGGCAGACCTGGAAGCTCCTCAGGAAAAACATCTGGGTAG

Coding sequence (CDS)

ATGAAACCCTTATCCAACAACTCTTGCAACTGGACCTTCAATTCCTTCAACTCTGCTGGAGCCATTCTGTACGGAGCTCTAGAGATAGGGGCAGTACCTGGCTCTAGCTCAATAGCAAAGTCAACCTCTCTGACTGGAGGCAGACCTGGAAGCTCCTCAGGAAAAACATCTGGGTAG

Protein sequence

MKPLSNNSCNWTFNSFNSAGAILYGALEIGAVPGSSSIAKSTSLTGGRPGSSSGKTSG
Homology
BLAST of PI0000285 vs. ExPASy TrEMBL
Match: A0A5D3CR86 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1193G00090 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.7e-08
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 0

Query: 1  MKPLSNNSCNWTFNSFNSAGAILYGALEIGAVPGSSSIAKSTSLTGGRPGSSSGKTS 58
          M PLS +SCN  FNSF+S  AILYGA EIGAVPG++S+  S SL+GG+P  SSG TS
Sbjct: 1  MYPLSTSSCNCIFNSFSSLVAILYGACEIGAVPGNNSMVNSISLSGGKPDRSSGNTS 57

BLAST of PI0000285 vs. ExPASy TrEMBL
Match: A0A2G2Y9G3 (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_30616 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.2e-07
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 0

Query: 1  MKPLSNNSCNWTFNSFNSAGAILYGALEIGAVPGSSSIAKSTSLTGGRPGSSSGKTS 58
          M PLS  S N++FNS +SAGAILYG ++IG V G  S+ KS SL+GG P  SSGKTS
Sbjct: 1  MNPLSKRSFNYSFNSLSSAGAILYGKIDIGRVSGKRSMPKSISLSGGIPRRSSGKTS 57

BLAST of PI0000285 vs. ExPASy TrEMBL
Match: A0A2G2WY72 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_09898 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.4e-07
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 1   MKPLSNNSCNWTFNSFNSAGAILYGALEIGAVPGSSSIAKSTSLTGGRPGSSSGKTS 58
           M P S  S N +FNS NSAGAILY  +EIG+VPGS+SI  STS + G+P  SSG TS
Sbjct: 98  MNPFSRKSFNCSFNSHNSAGAILYEVMEIGSVPGSTSIPNSTSRSRGKPRKSSGNTS 154

BLAST of PI0000285 vs. ExPASy TrEMBL
Match: A0A0S3RFS9 (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G223100 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-05
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 0

Query: 5  SNNSCNWTFNSFNSAGAILYGALEIGAVPGSSSIAKSTSLTGGRPGSSSGKTS 58
          SN S    FNS +SAGAILYGA+E G  PG+ SI KS S  GG+PG+SSGKTS
Sbjct: 7  SNRSSICFFNSASSAGAILYGAIETGPAPGTRSIVKSISRLGGKPGTSSGKTS 59

BLAST of PI0000285 vs. ExPASy TrEMBL
Match: A0A0S3SAJ3 (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis OX=157739 GN=Vigan.06G090500 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-05
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 0

Query: 5  SNNSCNWTFNSFNSAGAILYGALEIGAVPGSSSIAKSTSLTGGRPGSSSGKTS 58
          SN S    FNS +SAGAILYGA+E G  PG+ SI KS S  GG+PG+SSGKTS
Sbjct: 7  SNRSSICFFNSASSAGAILYGAIETGPAPGTRSIVKSISRLGGKPGTSSGKTS 59

BLAST of PI0000285 vs. NCBI nr
Match: KAF5760469.1 (hypothetical protein HanXRQr2_Chr16g0753871 [Helianthus annuus])

HSP 1 Score: 73.9 bits (180), Expect = 5.0e-10
Identity = 40/57 (70.18%), Postives = 44/57 (77.19%), Query Frame = 0

Query: 1  MKPLSNNSCNWTFNSFNSAGAILYGALEIGAVPGSSSIAKSTSLTGGRPGSSSGKTS 58
          M P S +SCN +FNSFNS GAI YGALEIG+ PG  SI  STS +GG PGSSSGKTS
Sbjct: 22 MNPRSRSSCNCSFNSFNSNGAIRYGALEIGSAPGIRSIVNSTSRSGGNPGSSSGKTS 78

BLAST of PI0000285 vs. NCBI nr
Match: KAF5758623.1 (hypothetical protein HanXRQr2_Chr16g0731311 [Helianthus annuus])

HSP 1 Score: 68.2 bits (165), Expect = 2.7e-08
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 1  MKPLSNNSCNWTFNSFNSAGAILYGALEIGAVPGSSSIAKSTSLTGGRPGSSSGKTSG 59
          MKPL+++S +W  NSF S GA LYGAL  GA PG  SI  ST L+GG+PG SSGKTSG
Sbjct: 25 MKPLASSSSSWVLNSFISVGANLYGALATGAAPGMISILNSTCLSGGKPGRSSGKTSG 82

BLAST of PI0000285 vs. NCBI nr
Match: TYK14095.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 3.6e-08
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 0

Query: 1  MKPLSNNSCNWTFNSFNSAGAILYGALEIGAVPGSSSIAKSTSLTGGRPGSSSGKTS 58
          M PLS +SCN  FNSF+S  AILYGA EIGAVPG++S+  S SL+GG+P  SSG TS
Sbjct: 1  MYPLSTSSCNCIFNSFSSLVAILYGACEIGAVPGNNSMVNSISLSGGKPDRSSGNTS 57

BLAST of PI0000285 vs. NCBI nr
Match: CAA3028001.1 (suppressor of mec-8 and unc-52 homolog 1, partial [Olea europaea subsp. europaea])

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-07
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 1   MKPLSNNSCNWTFNSFNSAGAILYGALEIGAVPGSSSIAKSTSLTGGRPGSSSGKTS 58
           MKP S NS N  FNS++S GAI YGAL+ GA PG+ SI  ST L+GG PG SSG TS
Sbjct: 200 MKPFSINSSNCNFNSWSSFGAIRYGALDTGAAPGTKSIVNSTCLSGGMPGKSSGNTS 256

BLAST of PI0000285 vs. NCBI nr
Match: KAF5817431.1 (hypothetical protein HanXRQr2_Chr02g0052921 [Helianthus annuus])

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-07
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 1  MKPLSNNSCNWTFNSFNSAGAILYGALEIGAVPGSSSIAKSTSLTGGRPGSSSGKTSG 59
          +KPL++ S +   NSF S GA LYGAL IGA PG  SI  ST L+GG+PGSSSGKTSG
Sbjct: 26 IKPLASRSSSCVLNSFISVGANLYGALAIGAAPGMMSILNSTCLSGGKPGSSSGKTSG 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CR861.7e-0864.91Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1193G00090 P... [more]
A0A2G2Y9G37.2e-0761.40Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_30616 PE=4 SV=1[more]
A0A2G2WY729.4e-0761.40Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_09898 PE=4 SV=1[more]
A0A0S3RFS91.0e-0564.15Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis OX=157739 G... [more]
A0A0S3SAJ31.0e-0564.15Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis OX=157739 G... [more]
Match NameE-valueIdentityDescription
KAF5760469.15.0e-1070.18hypothetical protein HanXRQr2_Chr16g0753871 [Helianthus annuus][more]
KAF5758623.12.7e-0863.79hypothetical protein HanXRQr2_Chr16g0731311 [Helianthus annuus][more]
TYK14095.13.6e-0864.91pol protein [Cucumis melo var. makuwa][more]
CAA3028001.11.8e-0763.16suppressor of mec-8 and unc-52 homolog 1, partial [Olea europaea subsp. europaea... [more]
KAF5817431.11.8e-0763.79hypothetical protein HanXRQr2_Chr02g0052921 [Helianthus annuus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..58

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0000285.1PI0000285.1mRNA