PI0000272 (gene) Melon (PI 482460) v1

Overview


Name	PI0000272
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	serine/threonine-protein phosphatase 7 long form homolog isoform X1
Location	chr07: 8277208 .. 8277384 (-)
RNA-Seq Expression	PI0000272
Synteny	PI0000272

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACACAACTTACAAGCTTTGAACTCAATGTGTGATCAAACATTGGGAACCGTAGAACAAATTATTCAACAGACTAGACGACTCAATGTTGCCGACACAGATCGAAGACGCGTTCGACGTAGACGACGACAACAAGACAATGATGTCGTAAAGGGAGACCAAGATAATGCTTAG

mRNA sequence

ATGGAACACAACTTACAAGCTTTGAACTCAATGTGTGATCAAACATTGGGAACCGTAGAACAAATTATTCAACAGACTAGACGACTCAATGTTGCCGACACAGATCGAAGACGCGTTCGACGTAGACGACGACAACAAGACAATGATGTCGTAAAGGGAGACCAAGATAATGCTTAG

Coding sequence (CDS)

ATGGAACACAACTTACAAGCTTTGAACTCAATGTGTGATCAAACATTGGGAACCGTAGAACAAATTATTCAACAGACTAGACGACTCAATGTTGCCGACACAGATCGAAGACGCGTTCGACGTAGACGACGACAACAAGACAATGATGTCGTAAAGGGAGACCAAGATAATGCTTAG

Protein sequence

MEHNLQALNSMCDQTLGTVEQIIQQTRRLNVADTDRRRVRRRRRQQDNDVVKGDQDNA

Homology

[Close]

BLAST of PI0000272 vs. ExPASy TrEMBL
Match: A0A1S4E383 (serine/threonine-protein phosphatase 7 long form homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498663 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-12
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 1   MEHNLQALNSMCDQTLGTVEQIIQQTRRLNVADTDRRRVRRRRRQQDN----DVVKGDQD 59
           MEHNLQ L SMCDQ L  +E IIQQT+RLNVADTDRR +RR+RR+QDN    D+V+GDQD
Sbjct: 459 MEHNLQDLGSMCDQFLENIEHIIQQTKRLNVADTDRRCIRRKRRRQDNNVVDDIVEGDQD 518

[Close]

BLAST of PI0000272 vs. ExPASy TrEMBL
Match: A0A1S3CBQ7 (serine/threonine-protein phosphatase 7 long form homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498663 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-12
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 1   MEHNLQALNSMCDQTLGTVEQIIQQTRRLNVADTDRRRVRRRRRQQDN----DVVKGDQD 59
           MEHNLQ L SMCDQ L  +E IIQQT+RLNVADTDRR +RR+RR+QDN    D+V+GDQD
Sbjct: 441 MEHNLQDLGSMCDQFLENIEHIIQQTKRLNVADTDRRCIRRKRRRQDNNVVDDIVEGDQD 500

[Close]

BLAST of PI0000272 vs. ExPASy TrEMBL
Match: A0A5A7TY99 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold199G00140 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.3e-11
Identity = 38/57 (66.67%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 1   MEHNLQALNSMCDQTLGTVEQIIQQTRRLNVADTDRRRVRRRRRQQDNDVVKGDQDN 58
           +EH+++AL  +CD+T   V+ IIQQTRRL VADTDRRR+RRRRR+Q +DVVKGD+DN
Sbjct: 696 VEHDIEALGQLCDRTTERVDHIIQQTRRLTVADTDRRRMRRRRRRQGDDVVKGDEDN 752

[Close]

BLAST of PI0000272 vs. ExPASy TrEMBL
Match: A0A5A7TPE7 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G003010 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.8e-10
Identity = 37/57 (64.91%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 1   MEHNLQALNSMCDQTLGTVEQIIQQTRRLNVADTDRRRVRRRRRQQDNDVVKGDQDN 58
           +EHN++AL  +CD+T   V+ IIQ+TRRL VADTDRRR+RRRRR+Q +DVV+GD+DN
Sbjct: 229 VEHNIEALGQICDRTTERVDHIIQKTRRLTVADTDRRRMRRRRRRQGDDVVEGDEDN 285

[Close]

BLAST of PI0000272 vs. ExPASy TrEMBL
Match: A0A5A7TSW1 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00240 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-10
Identity = 37/57 (64.91%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 1   MEHNLQALNSMCDQTLGTVEQIIQQTRRLNVADTDRRRVRRRRRQQDNDVVKGDQDN 58
           +EH+++AL  +CD+T   V+ IIQQTRRL VADTDRRR+RRRRR+Q +DVV+GD+DN
Sbjct: 441 VEHDIEALGQICDRTTERVDHIIQQTRRLTVADTDRRRMRRRRRRQGDDVVEGDEDN 497

[Close]

BLAST of PI0000272 vs. NCBI nr
Match: XP_016902435.1 (PREDICTED: serine/threonine-protein phosphatase 7 long form homolog isoform X1 [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 4.1e-12
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 1   MEHNLQALNSMCDQTLGTVEQIIQQTRRLNVADTDRRRVRRRRRQQDN----DVVKGDQD 59
           MEHNLQ L SMCDQ L  +E IIQQT+RLNVADTDRR +RR+RR+QDN    D+V+GDQD
Sbjct: 459 MEHNLQDLGSMCDQFLENIEHIIQQTKRLNVADTDRRCIRRKRRRQDNNVVDDIVEGDQD 518

[Close]

BLAST of PI0000272 vs. NCBI nr
Match: XP_008459571.1 (PREDICTED: serine/threonine-protein phosphatase 7 long form homolog isoform X2 [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 4.1e-12
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 1   MEHNLQALNSMCDQTLGTVEQIIQQTRRLNVADTDRRRVRRRRRQQDN----DVVKGDQD 59
           MEHNLQ L SMCDQ L  +E IIQQT+RLNVADTDRR +RR+RR+QDN    D+V+GDQD
Sbjct: 441 MEHNLQDLGSMCDQFLENIEHIIQQTKRLNVADTDRRCIRRKRRRQDNNVVDDIVEGDQD 500

[Close]

BLAST of PI0000272 vs. NCBI nr
Match: KAA0047938.1 (serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-10
Identity = 38/57 (66.67%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 1   MEHNLQALNSMCDQTLGTVEQIIQQTRRLNVADTDRRRVRRRRRQQDNDVVKGDQDN 58
           +EH+++AL  +CD+T   V+ IIQQTRRL VADTDRRR+RRRRR+Q +DVVKGD+DN
Sbjct: 696 VEHDIEALGQLCDRTTERVDHIIQQTRRLTVADTDRRRMRRRRRRQGDDVVKGDEDN 752

[Close]

BLAST of PI0000272 vs. NCBI nr
Match: KAA0043956.1 (serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 3.8e-10
Identity = 37/57 (64.91%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 1   MEHNLQALNSMCDQTLGTVEQIIQQTRRLNVADTDRRRVRRRRRQQDNDVVKGDQDN 58
           +EHN++AL  +CD+T   V+ IIQ+TRRL VADTDRRR+RRRRR+Q +DVV+GD+DN
Sbjct: 229 VEHNIEALGQICDRTTERVDHIIQKTRRLTVADTDRRRMRRRRRRQGDDVVEGDEDN 285

[Close]

BLAST of PI0000272 vs. NCBI nr
Match: TYK03303.1 (serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa] >TYK12342.1 serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 5.0e-10
Identity = 37/57 (64.91%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 1   MEHNLQALNSMCDQTLGTVEQIIQQTRRLNVADTDRRRVRRRRRQQDNDVVKGDQDN 58
           +EH+++AL  +CD+T   V+ IIQQTRRL VADTDRRR+RRRRR+Q +DVV+GD+DN
Sbjct: 523 VEHDIEALGQICDRTTERVDHIIQQTRRLTVADTDRRRMRRRRRRQGDDVVEGDEDN 579

The following BLAST results are available for this feature:

BLAST of PI0000272 vs.


Match Name	E-value	Identity	Description

BLAST of PI0000272 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E383	2.0e-12	70.97	serine/threonine-protein phosphatase 7 long form homolog isoform X1 OS=Cucumis m...	[more]
A0A1S3CBQ7	2.0e-12	70.97	serine/threonine-protein phosphatase 7 long form homolog isoform X2 OS=Cucumis m...	[more]
A0A5A7TY99	6.3e-11	66.67	Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu...	[more]
A0A5A7TPE7	1.8e-10	64.91	Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu...	[more]
A0A5A7TSW1	2.4e-10	64.91	Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu...	[more]

BLAST of PI0000272 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902435.1	4.1e-12	70.97	PREDICTED: serine/threonine-protein phosphatase 7 long form homolog isoform X1 [...	[more]
XP_008459571.1	4.1e-12	70.97	PREDICTED: serine/threonine-protein phosphatase 7 long form homolog isoform X2 [...	[more]
KAA0047938.1	1.3e-10	66.67	serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumi...	[more]
KAA0043956.1	3.8e-10	64.91	serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumi...	[more]
TYK03303.1	5.0e-10	64.91	serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumi...	[more]

BLAST of PI0000272 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0000272.1	PI0000272.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity