PI0000201 (gene) Melon (PI 482460) v1

Overview
NamePI0000201
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionZinc finger BED domain-containing protein RICESLEEPER 3-like
Locationchr04: 17892665 .. 17893418 (-)
RNA-Seq ExpressionPI0000201
SyntenyPI0000201
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAATGTAGTGGAACAATGTTGTAGACGTCTCTTTCATGAGTATAGTTGTACTCGAAGTGGTAGTGGACCAGGATGTAGTAGTACTACTAGTACACAAACTGTCTCATCAGGCTTGGATGCGAATATTGATTTTGATCCAAATGAAAAGGTGGGTGAAGATTTTGTCTATGACACGATTGTTGAGGAATTTGAAGGTGATGCGATTACTACACCTTTCAAACAGGGGTTATTAGAGATTGATATATATTTGTTGGAAGCCAATGTTAGGAACGAAGGTGATTTTGACATACTACAGTCGTGGAAGATGAACAGTGATCGATTTGAGGTTCTTAGTCATATGGCTAGAGATATTTTGGCTATTCCAGTTTTTACTGTAGCGTCTGAGTCGACTTTTAGTACCGGAGGACGTGTAGTTGATTCATCACATTGCTCATTGGCTCTTAAAACAGTGAAGGCTCTCATATGTACTCAAAATTGGCTAAATTCTGATGCAATAGATCTTGAAGTTCAACGTGAATTGGAAGAGGCTTCAAAATTTGAAGAAGGTATTATTCAATTTTTTTAACGATGTGTCTTTTGTAATTTTAGTGAAATCTTAAATTATTTAATATTCATGATGTTGTCTTTCTCTTCTTACTCTTGATTTTGATTATATAGGATTCCAGGTGGTTATGGATAATGAAAAGGAGCTTGAAGACCTTACACATTTAGATAACTTGTCAATTACCAACTACGCGACTACTGACTAA

mRNA sequence

ATGGGAAATGTAGTGGAACAATGTTGTAGACGTCTCTTTCATGAGTATAGTTGTACTCGAAGTGGTAGTGGACCAGGATGTAGTAGTACTACTAGTACACAAACTGTCTCATCAGGCTTGGATGCGAATATTGATTTTGATCCAAATGAAAAGGTGGGTGAAGATTTTGTCTATGACACGATTGTTGAGGAATTTGAAGGATTCCAGGTGGTTATGGATAATGAAAAGGAGCTTGAAGACCTTACACATTTAGATAACTTGTCAATTACCAACTACGCGACTACTGACTAA

Coding sequence (CDS)

ATGGGAAATGTAGTGGAACAATGTTGTAGACGTCTCTTTCATGAGTATAGTTGTACTCGAAGTGGTAGTGGACCAGGATGTAGTAGTACTACTAGTACACAAACTGTCTCATCAGGCTTGGATGCGAATATTGATTTTGATCCAAATGAAAAGGTGGGTGAAGATTTTGTCTATGACACGATTGTTGAGGAATTTGAAGGATTCCAGGTGGTTATGGATAATGAAAAGGAGCTTGAAGACCTTACACATTTAGATAACTTGTCAATTACCAACTACGCGACTACTGACTAA

Protein sequence

MGNVVEQCCRRLFHEYSCTRSGSGPGCSSTTSTQTVSSGLDANIDFDPNEKVGEDFVYDTIVEEFEGFQVVMDNEKELEDLTHLDNLSITNYATTD
Homology
[Close]
BLAST of PI0000201 vs. ExPASy TrEMBL
Match: A0A5A7URG0 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold970G00400 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.0e-21
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 0 

Query: 1   MGNVVEQCCRRLFHEYSCTRSGSGPGCSST--TSTQTVSSGLDANIDFDPNEKVGEDFVY 60
           MGNVVEQCCRRLFHEYS TRSGS  GCSST  TSTQTV SGLDANIDFD NE VGEDFVY
Sbjct: 526 MGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSITSTQTV-SGLDANIDFDSNENVGEDFVY 585

Query: 61  DTIVEEFE 67
           DTIVEEFE
Sbjct: 586 DTIVEEFE 592

[Close]
BLAST of PI0000201 vs. ExPASy TrEMBL
Match: A0A5D3CXI1 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004160 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.0e-21
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 0 

Query: 1   MGNVVEQCCRRLFHEYSCTRSGSGPGCS--STTSTQTVSSGLDANIDFDPNEKVGEDFVY 60
           MGNVVEQCCRRLFHEYS TRSGS  GCS  STTSTQTV SGLDANIDFD NE VGEDFVY
Sbjct: 410 MGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV-SGLDANIDFDSNENVGEDFVY 469

Query: 61  DTIVEEFE 67
           DTIVEEFE
Sbjct: 470 DTIVEEFE 476

[Close]
BLAST of PI0000201 vs. ExPASy TrEMBL
Match: A0A5D3CR68 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G001050 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.0e-21
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 0 

Query: 1   MGNVVEQCCRRLFHEYSCTRSGSGPGCS--STTSTQTVSSGLDANIDFDPNEKVGEDFVY 60
           MGNVVEQCCRRLFHEYS TRSGS  GCS  STTSTQTV SGLDANIDFD NE VGEDFVY
Sbjct: 526 MGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV-SGLDANIDFDSNENVGEDFVY 585

Query: 61  DTIVEEFE 67
           DTIVEEFE
Sbjct: 586 DTIVEEFE 592

[Close]
BLAST of PI0000201 vs. ExPASy TrEMBL
Match: A0A5A7SX87 (Thiamine biosynthetic bifunctional enzyme TH1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G001560 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.0e-21
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 0 

Query: 1   MGNVVEQCCRRLFHEYSCTRSGSGPGCS--STTSTQTVSSGLDANIDFDPNEKVGEDFVY 60
           MGNVVEQCCRRLFHEYS TRSGS  GCS  STTSTQTV SGLDANIDFD NE VGEDFVY
Sbjct: 475 MGNVVEQCCRRLFHEYSTTRSGSRQGCSNTSTTSTQTV-SGLDANIDFDSNENVGEDFVY 534

Query: 61  DTIVEEFE 67
           DTIVEEFE
Sbjct: 535 DTIVEEFE 541

[Close]
BLAST of PI0000201 vs. ExPASy TrEMBL
Match: A0A5D3DAN8 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001750 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.0e-21
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 0 

Query: 1   MGNVVEQCCRRLFHEYSCTRSGSGPGCS--STTSTQTVSSGLDANIDFDPNEKVGEDFVY 60
           MGNVVEQCCRRLFHEYS TRSGS  GCS  STTSTQTV SGLDANIDFD NE VGEDFVY
Sbjct: 461 MGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV-SGLDANIDFDSNENVGEDFVY 520

Query: 61  DTIVEEFE 67
           DTIVEEFE
Sbjct: 521 DTIVEEFE 527

[Close]
BLAST of PI0000201 vs. NCBI nr
Match: KAA0035954.1 (thiamine biosynthetic bifunctional enzyme TH1 [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.1e-21
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 0 

Query: 1   MGNVVEQCCRRLFHEYSCTRSGSGPGCS--STTSTQTVSSGLDANIDFDPNEKVGEDFVY 60
           MGNVVEQCCRRLFHEYS TRSGS  GCS  STTSTQTV SGLDANIDFD NE VGEDFVY
Sbjct: 475 MGNVVEQCCRRLFHEYSTTRSGSRQGCSNTSTTSTQTV-SGLDANIDFDSNENVGEDFVY 534

Query: 61  DTIVEEFE 67
           DTIVEEFE
Sbjct: 535 DTIVEEFE 541

[Close]
BLAST of PI0000201 vs. NCBI nr
Match: KAA0057608.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.1e-21
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 0 

Query: 1  MGNVVEQCCRRLFHEYSCTRSGSGPGCS--STTSTQTVSSGLDANIDFDPNEKVGEDFVY 60
          MGNVVEQCCRRLFHEYS TRSGS  GCS  STTSTQTV SGLDANIDFD NE VGEDFVY
Sbjct: 1  MGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV-SGLDANIDFDSNENVGEDFVY 60

Query: 61 DTIVEEFE 67
          DTIVEEFE
Sbjct: 61 DTIVEEFE 67

[Close]
BLAST of PI0000201 vs. NCBI nr
Match: KAA0038019.1 (zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.1e-21
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 0 

Query: 1   MGNVVEQCCRRLFHEYSCTRSGSGPGCS--STTSTQTVSSGLDANIDFDPNEKVGEDFVY 60
           MGNVVEQCCRRLFHEYS TRSGS  GCS  STTSTQTV SGLDANIDFD NE VGEDFVY
Sbjct: 512 MGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV-SGLDANIDFDSNENVGEDFVY 571

Query: 61  DTIVEEFE 67
           DTIVEEFE
Sbjct: 572 DTIVEEFE 578

[Close]
BLAST of PI0000201 vs. NCBI nr
Match: KAA0057700.1 (zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa] >TYK27486.1 zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.1e-21
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 0 

Query: 1   MGNVVEQCCRRLFHEYSCTRSGSGPGCSST--TSTQTVSSGLDANIDFDPNEKVGEDFVY 60
           MGNVVEQCCRRLFHEYS TRSGS  GCSST  TSTQTV SGLDANIDFD NE VGEDFVY
Sbjct: 526 MGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSITSTQTV-SGLDANIDFDSNENVGEDFVY 585

Query: 61  DTIVEEFE 67
           DTIVEEFE
Sbjct: 586 DTIVEEFE 592

[Close]
BLAST of PI0000201 vs. NCBI nr
Match: TYK28895.1 (putative transposase [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.1e-21
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 0 

Query: 1   MGNVVEQCCRRLFHEYSCTRSGSGPGCS--STTSTQTVSSGLDANIDFDPNEKVGEDFVY 60
           MGNVVEQCCRRLFHEYS TRSGS  GCS  STTSTQTV SGLDANIDFD NE VGEDFVY
Sbjct: 319 MGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV-SGLDANIDFDSNENVGEDFVY 378

Query: 61  DTIVEEFE 67
           DTIVEEFE
Sbjct: 379 DTIVEEFE 385

The following BLAST results are available for this feature:
BLAST of PI0000201 vs.
Match NameE-valueIdentityDescription
BLAST of PI0000201 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7URG01.0e-2188.24Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var... [more]
A0A5D3CXI11.0e-2188.24Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var... [more]
A0A5D3CR681.0e-2188.24Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var... [more]
A0A5A7SX871.0e-2188.24Thiamine biosynthetic bifunctional enzyme TH1 OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3DAN81.0e-2188.24Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var... [more]
BLAST of PI0000201 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0035954.12.1e-2188.24thiamine biosynthetic bifunctional enzyme TH1 [Cucumis melo var. makuwa][more]
KAA0057608.12.1e-2188.24transposase [Cucumis melo var. makuwa][more]
KAA0038019.12.1e-2188.24zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. ... [more]
KAA0057700.12.1e-2188.24zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. ... [more]
TYK28895.12.1e-2188.24putative transposase [Cucumis melo var. makuwa][more]
BLAST of PI0000201 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0000201.1PI0000201.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016310 phosphorylation
biological_process GO:0009791 post-embryonic development
biological_process GO:0009228 thiamine biosynthetic process
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008972 phosphomethylpyrimidine kinase activity
molecular_function GO:0046983 protein dimerization activity