PI0000174 (gene) Melon (PI 482460) v1

Overview


Name	PI0000174
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr05: 19071589 .. 19072101 (+)
RNA-Seq Expression	PI0000174
Synteny	PI0000174

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAACATACACTATATGTACGATGTACCTATTGTACCTGCACCAGTTCAAAGGAGACGTGCTCGAGTGCAAGAGCCTGATGAATTGGAAGAAATTGAACAACAAGTGCAAGAAGTGTCTCCTGTGAGACAAACACAAAGCGGGACTGCTGACGTTAGTCCAATGATGATGATGCCGGCATTTGGAACAGGATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTAGGGACAGGATATTATAATTCAAAGGCAGGTCCATCATTGTCAAACTTTGGACAAGGATACTACGATTTAGGGACCGATCCATCGTCTTCATACATGCATGGACATGGACGTGGTCGTGGAGAACATAACGAATATTTGTACTACGAACCGCCTGCAGCGGTACCCGAGCAGCCAGATGAGCAACAACAAGAGAATCAGGAGAGACTAGAGCAACAAAGAGTGCATGGTCGACGACGGCAACCAGCAAGAAATCGAAGACGTCCAGGTTGTGGAACACATTGA

mRNA sequence

ATGGAGAACATACACTATATGTACGATGTACCTATTGTACCTGCACCAGTTCAAAGGAGACGTGCTCGAGTGCAAGAGCCTGATGAATTGGAAGAAATTGAACAACAAGTGCAAGAAGTGTCTCCTGTGAGACAAACACAAAGCGGGACTGCTGACGTTAGTCCAATGATGATGATGCCGGCATTTGGAACAGGATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTAGGGACAGGATATTATAATTCAAAGGCAGGTCCATCATTGTCAAACTTTGGACAAGGATACTACGATTTAGGGACCGATCCATCGTCTTCATACATGCATGGACATGGACGTGGTCGTGGAGAACATAACGAATATTTGTACTACGAACCGCCTGCAGCGGTACCCGAGCAGCCAGATGAGCAACAACAAGAGAATCAGGAGAGACTAGAGCAACAAAGAGTGCATGGTCGACGACGGCAACCAGCAAGAAATCGAAGACGTCCAGGTTGTGGAACACATTGA

Coding sequence (CDS)

ATGGAGAACATACACTATATGTACGATGTACCTATTGTACCTGCACCAGTTCAAAGGAGACGTGCTCGAGTGCAAGAGCCTGATGAATTGGAAGAAATTGAACAACAAGTGCAAGAAGTGTCTCCTGTGAGACAAACACAAAGCGGGACTGCTGACGTTAGTCCAATGATGATGATGCCGGCATTTGGAACAGGATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTAGGGACAGGATATTATAATTCAAAGGCAGGTCCATCATTGTCAAACTTTGGACAAGGATACTACGATTTAGGGACCGATCCATCGTCTTCATACATGCATGGACATGGACGTGGTCGTGGAGAACATAACGAATATTTGTACTACGAACCGCCTGCAGCGGTACCCGAGCAGCCAGATGAGCAACAACAAGAGAATCAGGAGAGACTAGAGCAACAAAGAGTGCATGGTCGACGACGGCAACCAGCAAGAAATCGAAGACGTCCAGGTTGTGGAACACATTGA

Protein sequence

MENIHYMYDVPIVPAPVQRRRARVQEPDELEEIEQQVQEVSPVRQTQSGTADVSPMMMMPAFGTGYYDSGVGQSSDLGTGYYNSKAGPSLSNFGQGYYDLGTDPSSSYMHGHGRGRGEHNEYLYYEPPAAVPEQPDEQQQENQERLEQQRVHGRRRQPARNRRRPGCGTH

Homology

[Close]

BLAST of PI0000174 vs. ExPASy TrEMBL
Match: A0A5A7UKC7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G001140 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 6.5e-64
Identity = 135/186 (72.58%), Postives = 148/186 (79.57%), Query Frame = 0


Query: 1   MENIHYMYDVPIVPAPVQRRRARVQEPDELEEIEQQVQEVSPVRQTQSGTADVSPMMMMP 60
           MENIHYMYDVPIVPAPVQRRR  VQEPD+LEE++Q  +EV P+ QT+S    VSP+MMMP
Sbjct: 599 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTKSEHNYVSPVMMMP 658

Query: 61  AFGTGYYDSGVGQSSDLGTGYYNSKAGPSLSNFGQGYYDLGTDPSSSYMHGHGRGRGEHN 120
            FGT YYDSGVGQSSD G GYYNS+AG S ++FGQ YYDLG+DPSSSYMHGHGRGRGEHN
Sbjct: 659 TFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHN 718

Query: 121 EYLYYEPPAAVPEQPDE----------------QQQENQERLEQQRVHGRRRQPARNRRR 171
           EYLYYE PAAVPEQ DE                QQQENQE ++QQRV  RRRQPARNRRR
Sbjct: 719 EYLYYEVPAAVPEQSDELQQQENAAVPGQSDGQQQQENQEEIQQQRVQSRRRQPARNRRR 778

[Close]

BLAST of PI0000174 vs. ExPASy TrEMBL
Match: A0A5A7SU33 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00810 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 8.5e-64
Identity = 135/186 (72.58%), Postives = 148/186 (79.57%), Query Frame = 0


Query: 1   MENIHYMYDVPIVPAPVQRRRARVQEPDELEEIEQQVQEVSPVRQTQSGTADVSPMMMMP 60
           MENIHYMYDVPIVPAPVQRRR  VQEPD+LEE++Q  +EV P+ QTQS    VSP+MMMP
Sbjct: 591 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMP 650

Query: 61  AFGTGYYDSGVGQSSDLGTGYYNSKAGPSLSNFGQGYYDLGTDPSSSYMHGHGRGRGEHN 120
            FGT YYDSGVGQSSD G GYYNS+AG S ++FGQ YYDLG+DPSSSYMHGHGRGRGEHN
Sbjct: 651 TFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHN 710

Query: 121 EYLYYEPPAAVPEQPDE----------------QQQENQERLEQQRVHGRRRQPARNRRR 171
           EYLYYE PAAVPEQ +E                QQQENQE ++QQRV  RRRQPARNRRR
Sbjct: 711 EYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQSRRRQPARNRRR 770

[Close]

BLAST of PI0000174 vs. ExPASy TrEMBL
Match: A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 1.1e-63
Identity = 135/186 (72.58%), Postives = 147/186 (79.03%), Query Frame = 0


Query: 1    MENIHYMYDVPIVPAPVQRRRARVQEPDELEEIEQQVQEVSPVRQTQSGTADVSPMMMMP 60
            MENIHYMYDVPIVPAPVQRRR  VQEPD+LEE++Q  +EV P+ QTQS    VSP+MMMP
Sbjct: 1090 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQSEHNYVSPVMMMP 1149

Query: 61   AFGTGYYDSGVGQSSDLGTGYYNSKAGPSLSNFGQGYYDLGTDPSSSYMHGHGRGRGEHN 120
             FGT YYDSGVGQSSD G GYYNSKAG S ++FGQ YYDLG+DPSSSYMHGHGRGRG+HN
Sbjct: 1150 TFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGKHN 1209

Query: 121  EYLYYEPPAAVPEQPDE----------------QQQENQERLEQQRVHGRRRQPARNRRR 171
            EYLYYE PAAVPEQ DE                QQQEN E ++QQRV  RRRQPARNRRR
Sbjct: 1210 EYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEIQQQRVQSRRRQPARNRRR 1269

[Close]

BLAST of PI0000174 vs. ExPASy TrEMBL
Match: A0A5A7T598 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00500 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 1.1e-63
Identity = 135/186 (72.58%), Postives = 147/186 (79.03%), Query Frame = 0


Query: 1   MENIHYMYDVPIVPAPVQRRRARVQEPDELEEIEQQVQEVSPVRQTQSGTADVSPMMMMP 60
           MENIHYMYDVPIVPAPVQRRR  VQEPD+LEE++Q  +EV P+ QTQS    VSP+MMMP
Sbjct: 329 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQSEHNYVSPVMMMP 388

Query: 61  AFGTGYYDSGVGQSSDLGTGYYNSKAGPSLSNFGQGYYDLGTDPSSSYMHGHGRGRGEHN 120
            FGT YYDSGVGQSSD G GYYNSKAG S ++FGQ YYDLG+DPSSSYMHGHGRGRG+HN
Sbjct: 389 TFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGKHN 448

Query: 121 EYLYYEPPAAVPEQPDE----------------QQQENQERLEQQRVHGRRRQPARNRRR 171
           EYLYYE PAAVPEQ DE                QQQEN E ++QQRV  RRRQPARNRRR
Sbjct: 449 EYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEIQQQRVQSRRRQPARNRRR 508

[Close]

BLAST of PI0000174 vs. ExPASy TrEMBL
Match: A0A5A7VIP6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001330 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 7.2e-63
Identity = 134/186 (72.04%), Postives = 147/186 (79.03%), Query Frame = 0


Query: 1   MENIHYMYDVPIVPAPVQRRRARVQEPDELEEIEQQVQEVSPVRQTQSGTADVSPMMMMP 60
           MENIHYMYDVPIVPAPVQRRR  VQEPD+LEE++Q  +EV P+ QTQS    VSP+MMMP
Sbjct: 442 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMP 501

Query: 61  AFGTGYYDSGVGQSSDLGTGYYNSKAGPSLSNFGQGYYDLGTDPSSSYMHGHGRGRGEHN 120
            FGT YYDS VGQSSD G GYYNS+AG S ++FGQ YYDLG+DPSSSYMHGHGRGRGEHN
Sbjct: 502 TFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHN 561

Query: 121 EYLYYEPPAAVPEQPDE----------------QQQENQERLEQQRVHGRRRQPARNRRR 171
           EYLYYE PAAVPEQ +E                QQQENQE ++QQRV  RRRQPARNRRR
Sbjct: 562 EYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQSRRRQPARNRRR 621

[Close]

BLAST of PI0000174 vs. NCBI nr
Match: KAA0055624.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 253.4 bits (646), Expect = 1.3e-63
Identity = 135/186 (72.58%), Postives = 148/186 (79.57%), Query Frame = 0


Query: 1   MENIHYMYDVPIVPAPVQRRRARVQEPDELEEIEQQVQEVSPVRQTQSGTADVSPMMMMP 60
           MENIHYMYDVPIVPAPVQRRR  VQEPD+LEE++Q  +EV P+ QT+S    VSP+MMMP
Sbjct: 599 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTKSEHNYVSPVMMMP 658

Query: 61  AFGTGYYDSGVGQSSDLGTGYYNSKAGPSLSNFGQGYYDLGTDPSSSYMHGHGRGRGEHN 120
            FGT YYDSGVGQSSD G GYYNS+AG S ++FGQ YYDLG+DPSSSYMHGHGRGRGEHN
Sbjct: 659 TFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHN 718

Query: 121 EYLYYEPPAAVPEQPDE----------------QQQENQERLEQQRVHGRRRQPARNRRR 171
           EYLYYE PAAVPEQ DE                QQQENQE ++QQRV  RRRQPARNRRR
Sbjct: 719 EYLYYEVPAAVPEQSDELQQQENAAVPGQSDGQQQQENQEEIQQQRVQSRRRQPARNRRR 778

[Close]

BLAST of PI0000174 vs. NCBI nr
Match: KAA0034013.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 253.1 bits (645), Expect = 1.7e-63
Identity = 135/186 (72.58%), Postives = 148/186 (79.57%), Query Frame = 0


Query: 1   MENIHYMYDVPIVPAPVQRRRARVQEPDELEEIEQQVQEVSPVRQTQSGTADVSPMMMMP 60
           MENIHYMYDVPIVPAPVQRRR  VQEPD+LEE++Q  +EV P+ QTQS    VSP+MMMP
Sbjct: 591 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMP 650

Query: 61  AFGTGYYDSGVGQSSDLGTGYYNSKAGPSLSNFGQGYYDLGTDPSSSYMHGHGRGRGEHN 120
            FGT YYDSGVGQSSD G GYYNS+AG S ++FGQ YYDLG+DPSSSYMHGHGRGRGEHN
Sbjct: 651 TFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHN 710

Query: 121 EYLYYEPPAAVPEQPDE----------------QQQENQERLEQQRVHGRRRQPARNRRR 171
           EYLYYE PAAVPEQ +E                QQQENQE ++QQRV  RRRQPARNRRR
Sbjct: 711 EYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQSRRRQPARNRRR 770

[Close]

BLAST of PI0000174 vs. NCBI nr
Match: KAA0036767.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 252.7 bits (644), Expect = 2.3e-63
Identity = 135/186 (72.58%), Postives = 147/186 (79.03%), Query Frame = 0


Query: 1   MENIHYMYDVPIVPAPVQRRRARVQEPDELEEIEQQVQEVSPVRQTQSGTADVSPMMMMP 60
           MENIHYMYDVPIVPAPVQRRR  VQEPD+LEE++Q  +EV P+ QTQS    VSP+MMMP
Sbjct: 329 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQSEHNYVSPVMMMP 388

Query: 61  AFGTGYYDSGVGQSSDLGTGYYNSKAGPSLSNFGQGYYDLGTDPSSSYMHGHGRGRGEHN 120
            FGT YYDSGVGQSSD G GYYNSKAG S ++FGQ YYDLG+DPSSSYMHGHGRGRG+HN
Sbjct: 389 TFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGKHN 448

Query: 121 EYLYYEPPAAVPEQPDE----------------QQQENQERLEQQRVHGRRRQPARNRRR 171
           EYLYYE PAAVPEQ DE                QQQEN E ++QQRV  RRRQPARNRRR
Sbjct: 449 EYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEIQQQRVQSRRRQPARNRRR 508

[Close]

BLAST of PI0000174 vs. NCBI nr
Match: TYJ95836.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 252.7 bits (644), Expect = 2.3e-63
Identity = 135/186 (72.58%), Postives = 147/186 (79.03%), Query Frame = 0


Query: 1    MENIHYMYDVPIVPAPVQRRRARVQEPDELEEIEQQVQEVSPVRQTQSGTADVSPMMMMP 60
            MENIHYMYDVPIVPAPVQRRR  VQEPD+LEE++Q  +EV P+ QTQS    VSP+MMMP
Sbjct: 1090 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQSEHNYVSPVMMMP 1149

Query: 61   AFGTGYYDSGVGQSSDLGTGYYNSKAGPSLSNFGQGYYDLGTDPSSSYMHGHGRGRGEHN 120
             FGT YYDSGVGQSSD G GYYNSKAG S ++FGQ YYDLG+DPSSSYMHGHGRGRG+HN
Sbjct: 1150 TFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGKHN 1209

Query: 121  EYLYYEPPAAVPEQPDE----------------QQQENQERLEQQRVHGRRRQPARNRRR 171
            EYLYYE PAAVPEQ DE                QQQEN E ++QQRV  RRRQPARNRRR
Sbjct: 1210 EYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEIQQQRVQSRRRQPARNRRR 1269

[Close]

BLAST of PI0000174 vs. NCBI nr
Match: KAA0067080.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 250.0 bits (637), Expect = 1.5e-62
Identity = 134/186 (72.04%), Postives = 147/186 (79.03%), Query Frame = 0


Query: 1   MENIHYMYDVPIVPAPVQRRRARVQEPDELEEIEQQVQEVSPVRQTQSGTADVSPMMMMP 60
           MENIHYMYDVPIVPAPVQRRR  VQEPD+LEE++Q  +EV P+ QTQS    VSP+MMMP
Sbjct: 442 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMP 501

Query: 61  AFGTGYYDSGVGQSSDLGTGYYNSKAGPSLSNFGQGYYDLGTDPSSSYMHGHGRGRGEHN 120
            FGT YYDS VGQSSD G GYYNS+AG S ++FGQ YYDLG+DPSSSYMHGHGRGRGEHN
Sbjct: 502 TFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHN 561

Query: 121 EYLYYEPPAAVPEQPDE----------------QQQENQERLEQQRVHGRRRQPARNRRR 171
           EYLYYE PAAVPEQ +E                QQQENQE ++QQRV  RRRQPARNRRR
Sbjct: 562 EYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQSRRRQPARNRRR 621

The following BLAST results are available for this feature:

BLAST of PI0000174 vs.


Match Name	E-value	Identity	Description

BLAST of PI0000174 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKC7	6.5e-64	72.58	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7SU33	8.5e-64	72.58	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5D3BAB0	1.1e-63	72.58	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7T598	1.1e-63	72.58	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7VIP6	7.2e-63	72.04	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of PI0000174 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055624.1	1.3e-63	72.58	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0034013.1	1.7e-63	72.58	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0036767.1	2.3e-63	72.58	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
TYJ95836.1	2.3e-63	72.58	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0067080.1	1.5e-62	72.04	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of PI0000174 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0000174.1	PI0000174.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance
molecular_function	GO:0008270	zinc ion binding