Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAACCTTATGATCAAAGGAAAAGCTTGATTCAGTTTGGAACTCTCGAACCTATAGTTGTTCGATTCCAACAAAAGATCGTGACGATAGATTCCCAAAACAAAGACGAGACTGTTGAGGATGATGGCGAAGGATGGACAGTCATGACTCGTCAAAAAGGGAGACAACCAAATTCCATTCAAAAGAAGCTGCACTTCCATCAAAAGCATGGAAAAGGAAACATCTCTCATAAAAAGAAGGGAAAAAGAAATAAGAAGACGTGGAAGTCTAAGCCTATGCAGGAGGAAGACGATGATCTCCTACAACCTCAACGATCGCTAACTTTGTCAAAGTTCCTCCTTGATGATCATCCAGAGGAAGTTTTAGAAGTCATTGCATGTCATGCTATCAACATAGTAGAAGTCGACAATAATCATGCATCTTTTGAAGAAGTCGACAATTCAAAGGAAATCAAGCAAAGGACTACTGTCTTCGATCGTATCAAGCCTTCAACTGCTCGATCTCCAGTCTTTCAAAGGTTGAGTATGACCATGAAAGAAGAAGAAAACCAATGTCTAATGCTACTTCCACTCGAACTTCAACTTTCAAAAGGCTAA
mRNA sequence
ATGCAACCTTATGATCAAAGGAAAAGCTTGATTCAGTTTGGAACTCTCGAACCTATAGTTGTTCGATTCCAACAAAAGATCGTGACGATAGATTCCCAAAACAAAGACGAGACTGTTGAGGATGATGGCGAAGGATGGACAGTCATGACTCGTCAAAAAGGGAGACAACCAAATTCCATTCAAAAGAAGCTGCACTTCCATCAAAAGCATGGAAAAGGAAACATCTCTCATAAAAAGAAGGGAAAAAGAAATAAGAAGACGTGGAAGTCTAAGCCTATGCAGGAGGAAGACGATGATCTCCTACAACCTCAACGATCGCTAACTTTGTCAAAGTTCCTCCTTGATGATCATCCAGAGGAAGTTTTAGAAGTCATTGCATGTCATGCTATCAACATAGTAGAAGTCGACAATAATCATGCATCTTTTGAAGAAGTCGACAATTCAAAGGAAATCAAGCAAAGGACTACTGTCTTCGATCGTATCAAGCCTTCAACTGCTCGATCTCCAGTCTTTCAAAGGTTGAGTATGACCATGAAAGAAGAAGAAAACCAATGTCTAATGCTACTTCCACTCGAACTTCAACTTTCAAAAGGCTAA
Coding sequence (CDS)
ATGCAACCTTATGATCAAAGGAAAAGCTTGATTCAGTTTGGAACTCTCGAACCTATAGTTGTTCGATTCCAACAAAAGATCGTGACGATAGATTCCCAAAACAAAGACGAGACTGTTGAGGATGATGGCGAAGGATGGACAGTCATGACTCGTCAAAAAGGGAGACAACCAAATTCCATTCAAAAGAAGCTGCACTTCCATCAAAAGCATGGAAAAGGAAACATCTCTCATAAAAAGAAGGGAAAAAGAAATAAGAAGACGTGGAAGTCTAAGCCTATGCAGGAGGAAGACGATGATCTCCTACAACCTCAACGATCGCTAACTTTGTCAAAGTTCCTCCTTGATGATCATCCAGAGGAAGTTTTAGAAGTCATTGCATGTCATGCTATCAACATAGTAGAAGTCGACAATAATCATGCATCTTTTGAAGAAGTCGACAATTCAAAGGAAATCAAGCAAAGGACTACTGTCTTCGATCGTATCAAGCCTTCAACTGCTCGATCTCCAGTCTTTCAAAGGTTGAGTATGACCATGAAAGAAGAAGAAAACCAATGTCTAATGCTACTTCCACTCGAACTTCAACTTTCAAAAGGCTAA
Protein sequence
MQPYDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKKLHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQPQRSLTLSKFLLDDHPEEVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMKEEENQCLMLLPLELQLSKG
Homology
BLAST of PI0000159 vs. ExPASy TrEMBL
Match:
A0A5D3DBR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00850 PE=4 SV=1)
HSP 1 Score: 256.1 bits (653), Expect = 1.2e-64
Identity = 130/186 (69.89%), Postives = 155/186 (83.33%), Query Frame = 0
Query: 4 YDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKK 63
YDQRKSLIQFGT +PI+VRFQQKI+T +SQNK+E +ED+GE W V+ +K RQ +SIQ K
Sbjct: 228 YDQRKSLIQFGTFKPILVRFQQKIMTSNSQNKEEPIEDEGEEWIVVAHKKERQTSSIQTK 287
Query: 64 LHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQPQRSLTLSKFL----LDDHPE 123
HFHQK+ KGNISH KKG+RNKK WK KPM+ +D+D LQP+RS+TL+KFL L+DHPE
Sbjct: 288 SHFHQKYSKGNISHNKKGRRNKKMWKPKPMKGKDEDFLQPRRSITLAKFLPRNFLEDHPE 347
Query: 124 EVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMK 183
E+LEV ACH +IVEVDNN+ S+EEVDNS EIKQRT+VF+RIKP T RS VFQRLSM K
Sbjct: 348 EILEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSVFNRIKPLTTRSSVFQRLSMATK 407
Query: 184 EEENQC 186
EEENQC
Sbjct: 408 EEENQC 413
BLAST of PI0000159 vs. ExPASy TrEMBL
Match:
A0A5A7U3T4 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001930 PE=4 SV=1)
HSP 1 Score: 252.7 bits (644), Expect = 1.3e-63
Identity = 128/187 (68.45%), Postives = 156/187 (83.42%), Query Frame = 0
Query: 4 YDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKK 63
YDQR+SLIQFGT EPI+VRFQQKI+T +SQNK+E +ED GE W V+ +K RQ +S+Q K
Sbjct: 251 YDQRESLIQFGTFEPILVRFQQKIMTSNSQNKEEPIEDKGEEWIVVALKKERQTSSVQTK 310
Query: 64 LHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQPQRSLTLSKFL----LDDHPE 123
HFHQKH KGNISHKKKG+RNKK WKSKP++ +D+D LQP+RS+TL++FL L+DHPE
Sbjct: 311 SHFHQKHSKGNISHKKKGRRNKKMWKSKPIKGKDEDFLQPRRSITLAEFLLRSFLEDHPE 370
Query: 124 EVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMK 183
E+LEV ACH +IVEVDNN+ S+EE+DNS EIKQRT+VFDR KP T RS VFQRLSM K
Sbjct: 371 EILEVTACHTTSIVEVDNNYDSYEEMDNSNEIKQRTSVFDRNKPLTTRSSVFQRLSMATK 430
Query: 184 EEENQCL 187
+EE+QCL
Sbjct: 431 KEEDQCL 437
BLAST of PI0000159 vs. ExPASy TrEMBL
Match:
A0A5A7TGM1 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold333G00260 PE=4 SV=1)
HSP 1 Score: 252.3 bits (643), Expect = 1.7e-63
Identity = 125/186 (67.20%), Postives = 155/186 (83.33%), Query Frame = 0
Query: 4 YDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKK 63
YDQR+SLIQFGT EPI+VRFQQK++T +SQNK+E +ED+GE W V+ +K RQ +S+Q
Sbjct: 320 YDQRESLIQFGTFEPILVRFQQKVMTSNSQNKEEPIEDEGEEWIVVAHKKERQTSSVQTN 379
Query: 64 LHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQPQRSLTLSKF----LLDDHPE 123
HFHQKH KGNISHKKKG+RNKK WKSKP++ +D+D LQP++S+TL++F L+DHP+
Sbjct: 380 SHFHQKHSKGNISHKKKGRRNKKMWKSKPIKGKDEDFLQPRQSITLAEFFPRSFLEDHPK 439
Query: 124 EVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMK 183
E+LEV ACH +IVE DNN+ S+EEVDNS EIKQRT+VFDRIKP T RS VFQRLS+T K
Sbjct: 440 EILEVTACHTTSIVEFDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSITTK 499
Query: 184 EEENQC 186
EEENQC
Sbjct: 500 EEENQC 505
BLAST of PI0000159 vs. ExPASy TrEMBL
Match:
A0A5D3CCI8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00350 PE=4 SV=1)
HSP 1 Score: 251.5 bits (641), Expect = 2.9e-63
Identity = 127/186 (68.28%), Postives = 154/186 (82.80%), Query Frame = 0
Query: 4 YDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKK 63
YDQ++SLIQFGT EPI+VR QQKI+T +SQNK+E +ED+GE W V+ +K RQ NS+Q K
Sbjct: 394 YDQKESLIQFGTFEPILVRLQQKIMTSNSQNKEEPIEDEGEEWIVVAHKKERQTNSVQTK 453
Query: 64 LHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQPQRSLTLSKFL----LDDHPE 123
HFHQKH KGNISHKKKG+RNKK WK KP++ +++D LQP+RS+TL++FL L+DH E
Sbjct: 454 SHFHQKHSKGNISHKKKGRRNKKMWKPKPIKGKEEDFLQPRRSITLAEFLSRSFLEDHSE 513
Query: 124 EVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMK 183
EVLEV ACH +IVEVDNN+ S+EEVDNS EIKQRT+VFDRIKP T RS VFQRLSM K
Sbjct: 514 EVLEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATK 573
Query: 184 EEENQC 186
EE+NQC
Sbjct: 574 EEKNQC 579
BLAST of PI0000159 vs. ExPASy TrEMBL
Match:
A0A5A7V7A0 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001760 PE=4 SV=1)
HSP 1 Score: 251.1 bits (640), Expect = 3.7e-63
Identity = 129/185 (69.73%), Postives = 156/185 (84.32%), Query Frame = 0
Query: 5 DQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKKL 64
DQRKSLIQFGT PI+V FQQ+IVTI+SQNK+ +DDGEGW ++TRQKGRQPNSIQK+L
Sbjct: 160 DQRKSLIQFGTSAPILVLFQQRIVTINSQNKEAHGKDDGEGWIIVTRQKGRQPNSIQKEL 219
Query: 65 HFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQPQRSLTLSKFL----LDDHPEE 124
FHQK+ KG+ISHKKKG+RNKK W KP++ +D+D LQ + ++TL++FL L+DHPEE
Sbjct: 220 RFHQKYAKGSISHKKKGRRNKKMWNPKPIKGKDEDFLQLRLTITLAEFLPRSFLEDHPEE 279
Query: 125 VLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMKE 184
+LEV ACHA +IVEVDNN+ S +EV+NS EI QRT+VFDRIKPST RS VFQRLSMT KE
Sbjct: 280 ILEVTACHAASIVEVDNNYGSSKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSMTTKE 339
Query: 185 EENQC 186
EENQC
Sbjct: 340 EENQC 344
BLAST of PI0000159 vs. NCBI nr
Match:
TYK20938.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 256.1 bits (653), Expect = 2.4e-64
Identity = 130/186 (69.89%), Postives = 155/186 (83.33%), Query Frame = 0
Query: 4 YDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKK 63
YDQRKSLIQFGT +PI+VRFQQKI+T +SQNK+E +ED+GE W V+ +K RQ +SIQ K
Sbjct: 228 YDQRKSLIQFGTFKPILVRFQQKIMTSNSQNKEEPIEDEGEEWIVVAHKKERQTSSIQTK 287
Query: 64 LHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQPQRSLTLSKFL----LDDHPE 123
HFHQK+ KGNISH KKG+RNKK WK KPM+ +D+D LQP+RS+TL+KFL L+DHPE
Sbjct: 288 SHFHQKYSKGNISHNKKGRRNKKMWKPKPMKGKDEDFLQPRRSITLAKFLPRNFLEDHPE 347
Query: 124 EVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMK 183
E+LEV ACH +IVEVDNN+ S+EEVDNS EIKQRT+VF+RIKP T RS VFQRLSM K
Sbjct: 348 EILEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSVFNRIKPLTTRSSVFQRLSMATK 407
Query: 184 EEENQC 186
EEENQC
Sbjct: 408 EEENQC 413
BLAST of PI0000159 vs. NCBI nr
Match:
KAA0050543.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 252.7 bits (644), Expect = 2.7e-63
Identity = 128/187 (68.45%), Postives = 156/187 (83.42%), Query Frame = 0
Query: 4 YDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKK 63
YDQR+SLIQFGT EPI+VRFQQKI+T +SQNK+E +ED GE W V+ +K RQ +S+Q K
Sbjct: 251 YDQRESLIQFGTFEPILVRFQQKIMTSNSQNKEEPIEDKGEEWIVVALKKERQTSSVQTK 310
Query: 64 LHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQPQRSLTLSKFL----LDDHPE 123
HFHQKH KGNISHKKKG+RNKK WKSKP++ +D+D LQP+RS+TL++FL L+DHPE
Sbjct: 311 SHFHQKHSKGNISHKKKGRRNKKMWKSKPIKGKDEDFLQPRRSITLAEFLLRSFLEDHPE 370
Query: 124 EVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMK 183
E+LEV ACH +IVEVDNN+ S+EE+DNS EIKQRT+VFDR KP T RS VFQRLSM K
Sbjct: 371 EILEVTACHTTSIVEVDNNYDSYEEMDNSNEIKQRTSVFDRNKPLTTRSSVFQRLSMATK 430
Query: 184 EEENQCL 187
+EE+QCL
Sbjct: 431 KEEDQCL 437
BLAST of PI0000159 vs. NCBI nr
Match:
KAA0040811.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 252.3 bits (643), Expect = 3.5e-63
Identity = 125/186 (67.20%), Postives = 155/186 (83.33%), Query Frame = 0
Query: 4 YDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKK 63
YDQR+SLIQFGT EPI+VRFQQK++T +SQNK+E +ED+GE W V+ +K RQ +S+Q
Sbjct: 320 YDQRESLIQFGTFEPILVRFQQKVMTSNSQNKEEPIEDEGEEWIVVAHKKERQTSSVQTN 379
Query: 64 LHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQPQRSLTLSKF----LLDDHPE 123
HFHQKH KGNISHKKKG+RNKK WKSKP++ +D+D LQP++S+TL++F L+DHP+
Sbjct: 380 SHFHQKHSKGNISHKKKGRRNKKMWKSKPIKGKDEDFLQPRQSITLAEFFPRSFLEDHPK 439
Query: 124 EVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMK 183
E+LEV ACH +IVE DNN+ S+EEVDNS EIKQRT+VFDRIKP T RS VFQRLS+T K
Sbjct: 440 EILEVTACHTTSIVEFDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSITTK 499
Query: 184 EEENQC 186
EEENQC
Sbjct: 500 EEENQC 505
BLAST of PI0000159 vs. NCBI nr
Match:
TYK08944.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 251.5 bits (641), Expect = 5.9e-63
Identity = 127/186 (68.28%), Postives = 154/186 (82.80%), Query Frame = 0
Query: 4 YDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKK 63
YDQ++SLIQFGT EPI+VR QQKI+T +SQNK+E +ED+GE W V+ +K RQ NS+Q K
Sbjct: 394 YDQKESLIQFGTFEPILVRLQQKIMTSNSQNKEEPIEDEGEEWIVVAHKKERQTNSVQTK 453
Query: 64 LHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQPQRSLTLSKFL----LDDHPE 123
HFHQKH KGNISHKKKG+RNKK WK KP++ +++D LQP+RS+TL++FL L+DH E
Sbjct: 454 SHFHQKHSKGNISHKKKGRRNKKMWKPKPIKGKEEDFLQPRRSITLAEFLSRSFLEDHSE 513
Query: 124 EVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMK 183
EVLEV ACH +IVEVDNN+ S+EEVDNS EIKQRT+VFDRIKP T RS VFQRLSM K
Sbjct: 514 EVLEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATK 573
Query: 184 EEENQC 186
EE+NQC
Sbjct: 574 EEKNQC 579
BLAST of PI0000159 vs. NCBI nr
Match:
KAA0061611.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 251.1 bits (640), Expect = 7.7e-63
Identity = 129/185 (69.73%), Postives = 156/185 (84.32%), Query Frame = 0
Query: 5 DQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKKL 64
DQRKSLIQFGT PI+V FQQ+IVTI+SQNK+ +DDGEGW ++TRQKGRQPNSIQK+L
Sbjct: 160 DQRKSLIQFGTSAPILVLFQQRIVTINSQNKEAHGKDDGEGWIIVTRQKGRQPNSIQKEL 219
Query: 65 HFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQPQRSLTLSKFL----LDDHPEE 124
FHQK+ KG+ISHKKKG+RNKK W KP++ +D+D LQ + ++TL++FL L+DHPEE
Sbjct: 220 RFHQKYAKGSISHKKKGRRNKKMWNPKPIKGKDEDFLQLRLTITLAEFLPRSFLEDHPEE 279
Query: 125 VLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMKE 184
+LEV ACHA +IVEVDNN+ S +EV+NS EI QRT+VFDRIKPST RS VFQRLSMT KE
Sbjct: 280 ILEVTACHAASIVEVDNNYGSSKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSMTTKE 339
Query: 185 EENQC 186
EENQC
Sbjct: 340 EENQC 344
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DBR8 | 1.2e-64 | 69.89 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| A0A5A7U3T4 | 1.3e-63 | 68.45 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
| A0A5A7TGM1 | 1.7e-63 | 67.20 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
| A0A5D3CCI8 | 2.9e-63 | 68.28 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| A0A5A7V7A0 | 3.7e-63 | 69.73 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| TYK20938.1 | 2.4e-64 | 69.89 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| KAA0050543.1 | 2.7e-63 | 68.45 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| KAA0040811.1 | 3.5e-63 | 67.20 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| TYK08944.1 | 5.9e-63 | 68.28 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| KAA0061611.1 | 7.7e-63 | 69.73 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
