PI0000121 (gene) Melon (PI 482460) v1

Overview


Name	PI0000121
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	protein FAR-RED ELONGATED HYPOCOTYL 3-like
Location	chr04: 17676318 .. 17677527 (+)
RNA-Seq Expression	PI0000121
Synteny	PI0000121

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCAAAATGTTCCTTCAATTCCATCTCACCTTCATTTTATCTCGAAATACAATATGGGTGTGAATGTTGTGCAATCATTAAGTCCACTGAATGATAGCGTAGTTCCACTAGAGTTGGGAGATGATATGGATGAATTTTTGAACATGGATTTTGTACTAGATGTTGACACAACAACAGATTCTAATATGAATATTATTGTGGAGGATGTGGACTTTTTCGAGGGTGATGTTCGTGTGGAATCAATGAACGATGAAACATTAGTAACCGTAAAAATAGGGTCAACCTACAATGTAGAATCACATACTGATGGAGGACCATTGGAAGAGAGTAGCCCGACAAGCAATGATGAAGATCCTACAGCTCCATTACAAGTTTTGAATCAGGTATCGCTTCTTGGAAAAAGGAAGCGTAACACTGAATTAAGTATGAACCCCATTGTTATCTCGTTAGACTCAAACGTAGAAGAAGTTGATGTTGGTAATCTATTTCCAAGCAAGAAAGATTTATGTAAGACATTATCTGTCATTGCCATTCATTTTTTTATATCGTGTTGATAGATCTACGAAGAAACTATTTGTTGTAAAATGTGTATACTTGACATGTAAATGGAAAGTTATGGTGGTTGTAAGTAAGGATTCTGATTGTTCAAAATCACAAAATACGTTAGTTCACACATGTCGAAAAGTCCTAAAGAAGAAAAGGTCAGAAACAAGCTAGAAGTTGGATTATTGGTGAACTATAAAGTCCAAGTACCAAGAAGTCGGTCGTAGTTACAAACCAAAGAAGATCATTCAGAACGTTTGAAAGGATTACGATGTGAACCTAAGCTACGAAAGGAAGTAGTGGGCTAGAAAATTTACGTTGACATTAGCTAGAGATTAGGAAGGCATTTCTTTACTTCCAAGGTTTATGGAAGGCATTGAAGATTGTCAACTCTAGCTCTCATTACGAATTGGATTTGGATTTTGATGGGCACTTCAAATATTTGTATATGGCACTTGGGGTGGCAGTAAGTTATGTTCGACCTATACTTGTAGTGGATGCAATTCATTTGAAAGGCAATTACAAAGGTATTATGCTTGTAGTTGTTTTAATTGATGCTAACAAACAAATATATCATGTGTTGCTTTGGTTTAAGGGATAGAGAAAACAGCGTTCATAGACATGGTTCATGAGAAGGTTGTAGGAAACACTTGGCGTGGTTAA

mRNA sequence

ATGGCTCAAAATGTTCCTTCAATTCCATCTCACCTTCATTTTATCTCGAAATACAATATGGGTGTGAATGTTGTGCAATCATTAAGTCCACTGAATGATAGCGTAGTTCCACTAGAGTTGGGAGATGATATGGATGAATTTTTGAACATGGATTTTGTACTAGATGTTGACACAACAACAGATTCTAATATGAATATTATTGTGGAGGATGTGGACTTTTTCGAGGGTGATGTTCGTGTGGAATCAATGAACGATGAAACATTAGTAACCGTAAAAATAGGGTCAACCTACAATGTAGAATCACATACTGATGGAGGACCATTGGAAGAGAGTAGCCCGACAAGCAATGATGAAGATCCTACAGCTCCATTACAAGTTTTGAATCAGGTATCGCTTCTTGGAAAAAGGAAGCGTAACACTGAATTAAGTATGAACCCCATTGTTATCTCGTTAGACTCAAACGTAGAAGAAGTTGATGTTGGTAATCTATTTCCAAGCAAGAAAGATTTATGTTTATGGAAGGCATTGAAGATTGTCAACTCTAGCTCTCATTACGAATTGGATTTGGATTTTGATGGGCACTTCAAATATTTGTATATGGCACTTGGGGTGGCAGTAAGTTATGTTCGACCTATACTTGTAGTGGATGCAATTCATTTGAAAGGCAATTACAAAGGGATAGAGAAAACAGCGTTCATAGACATGGTTCATGAGAAGGTTGTAGGAAACACTTGGCGTGGTTAA

Coding sequence (CDS)

ATGGCTCAAAATGTTCCTTCAATTCCATCTCACCTTCATTTTATCTCGAAATACAATATGGGTGTGAATGTTGTGCAATCATTAAGTCCACTGAATGATAGCGTAGTTCCACTAGAGTTGGGAGATGATATGGATGAATTTTTGAACATGGATTTTGTACTAGATGTTGACACAACAACAGATTCTAATATGAATATTATTGTGGAGGATGTGGACTTTTTCGAGGGTGATGTTCGTGTGGAATCAATGAACGATGAAACATTAGTAACCGTAAAAATAGGGTCAACCTACAATGTAGAATCACATACTGATGGAGGACCATTGGAAGAGAGTAGCCCGACAAGCAATGATGAAGATCCTACAGCTCCATTACAAGTTTTGAATCAGGTATCGCTTCTTGGAAAAAGGAAGCGTAACACTGAATTAAGTATGAACCCCATTGTTATCTCGTTAGACTCAAACGTAGAAGAAGTTGATGTTGGTAATCTATTTCCAAGCAAGAAAGATTTATGTTTATGGAAGGCATTGAAGATTGTCAACTCTAGCTCTCATTACGAATTGGATTTGGATTTTGATGGGCACTTCAAATATTTGTATATGGCACTTGGGGTGGCAGTAAGTTATGTTCGACCTATACTTGTAGTGGATGCAATTCATTTGAAAGGCAATTACAAAGGGATAGAGAAAACAGCGTTCATAGACATGGTTCATGAGAAGGTTGTAGGAAACACTTGGCGTGGTTAA

Protein sequence

MAQNVPSIPSHLHFISKYNMGVNVVQSLSPLNDSVVPLELGDDMDEFLNMDFVLDVDTTTDSNMNIIVEDVDFFEGDVRVESMNDETLVTVKIGSTYNVESHTDGGPLEESSPTSNDEDPTAPLQVLNQVSLLGKRKRNTELSMNPIVISLDSNVEEVDVGNLFPSKKDLCLWKALKIVNSSSHYELDLDFDGHFKYLYMALGVAVSYVRPILVVDAIHLKGNYKGIEKTAFIDMVHEKVVGNTWRG

Homology

[Close]

BLAST of PI0000121 vs. ExPASy TrEMBL
Match: A0A6J1DL12 (uncharacterized protein LOC111022077 OS=Momordica charantia OX=3673 GN=LOC111022077 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-07
Identity = 30/62 (48.39%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 174 KALKIVNSSSHYELDLDFDGHFKYLYMALGVAV----SYVRPILVVDAIHLKGNYKGIEK 232
           +ALK+VN+ + +E++L+ D +FKY +MALG  +    S +RP+LV+D  HLKG YKG+  
Sbjct: 276 EALKVVNTGTIFEMELEEDKYFKYAFMALGCCIRGFSSCIRPVLVIDGAHLKGKYKGVIL 335

[Close]

BLAST of PI0000121 vs. ExPASy TrEMBL
Match: A0A6J1D1Z5 (protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Momordica charantia OX=3673 GN=LOC111016624 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.0e-06
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 174 KALKIVNSSSHYELDLDFDGHFKYLYMALGVAV----SYVRPILVVDAIHLKGNYKGIEK 232
           +ALK VN  + + + L+ D  FKY++MALG ++    S +RPILVVD  HLKG YKG+  
Sbjct: 41  EALKAVNEGTVFHMKLEDDTFFKYVFMALGCSIRGFGSCIRPILVVDGAHLKGKYKGVLL 100

[Close]

BLAST of PI0000121 vs. ExPASy TrEMBL
Match: A0A6J1DU12 (protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Momordica charantia OX=3673 GN=LOC111023994 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.9e-06
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 174 KALKIVNSSSHYELDLDFDGHFKYLYMALGVAV----SYVRPILVVDAIHLKGNYKGIEK 232
           +ALK VN  + + + L+ D  FKY +MALG ++    S +RPILVVD  HLKG YKG+  
Sbjct: 167 EALKAVNEGTVFHMKLEDDTFFKYAFMALGCSIRGFGSCIRPILVVDGAHLKGKYKGVLL 226

[Close]

BLAST of PI0000121 vs. ExPASy TrEMBL
Match: A0A6J1DS25 (protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Momordica charantia OX=3673 GN=LOC111023776 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.9e-06
Identity = 28/63 (44.44%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 174 KALKIVNSSSHYELDLDFDGHFKYLYMALGVAV----SYVRPILVVDAIHLKGNYKGIEK 233
           +ALK+VN+S  +E++L+ D +F Y +MALG  +    S +RP+LV+D  HLKG Y+G+  
Sbjct: 186 EALKVVNASIIFEVELEEDKYFNYAFMALGCCIRGFSSCIRPVLVIDDAHLKGKYRGVIH 245

[Close]

BLAST of PI0000121 vs. ExPASy TrEMBL
Match: A0A6J1DU86 (uncharacterized protein LOC111024486 OS=Momordica charantia OX=3673 GN=LOC111024486 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.9e-06
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 174 KALKIVNSSSHYELDLDFDGHFKYLYMALGVAV----SYVRPILVVDAIHLKGNYKGIEK 232
           +ALK VN  + + + L+ D  FKY +MALG ++    S +RPILVVD  HLKG YKG+  
Sbjct: 41  QALKAVNEGTVFHMKLEDDTFFKYAFMALGCSIRGFGSCIRPILVVDGAHLKGKYKGVLL 100

[Close]

BLAST of PI0000121 vs. NCBI nr
Match: XP_022154930.1 (uncharacterized protein LOC111022077 [Momordica charantia])

HSP 1 Score: 66.2 bits (160), Expect = 4.4e-07
Identity = 30/62 (48.39%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 174 KALKIVNSSSHYELDLDFDGHFKYLYMALGVAV----SYVRPILVVDAIHLKGNYKGIEK 232
           +ALK+VN+ + +E++L+ D +FKY +MALG  +    S +RP+LV+D  HLKG YKG+  
Sbjct: 276 EALKVVNTGTIFEMELEEDKYFKYAFMALGCCIRGFSSCIRPVLVIDGAHLKGKYKGVIL 335

[Close]

BLAST of PI0000121 vs. NCBI nr
Match: XP_022147769.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia])

HSP 1 Score: 62.0 bits (149), Expect = 8.3e-06
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 174 KALKIVNSSSHYELDLDFDGHFKYLYMALGVAV----SYVRPILVVDAIHLKGNYKGIEK 232
           +ALK VN  + + + L+ D  FKY++MALG ++    S +RPILVVD  HLKG YKG+  
Sbjct: 41  EALKAVNEGTVFHMKLEDDTFFKYVFMALGCSIRGFGSCIRPILVVDGAHLKGKYKGVLL 100

[Close]

BLAST of PI0000121 vs. NCBI nr
Match: XP_022156943.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-05
Identity = 28/63 (44.44%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 174 KALKIVNSSSHYELDLDFDGHFKYLYMALGVAV----SYVRPILVVDAIHLKGNYKGIEK 233
           +ALK+VN+S  +E++L+ D +F Y +MALG  +    S +RP+LV+D  HLKG Y+G+  
Sbjct: 186 EALKVVNASIIFEVELEEDKYFNYAFMALGCCIRGFSSCIRPVLVIDDAHLKGKYRGVIH 245

[Close]

BLAST of PI0000121 vs. NCBI nr
Match: XP_022157237.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-05
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 174 KALKIVNSSSHYELDLDFDGHFKYLYMALGVAV----SYVRPILVVDAIHLKGNYKGIEK 232
           +ALK VN  + + + L+ D  FKY +MALG ++    S +RPILVVD  HLKG YKG+  
Sbjct: 167 EALKAVNEGTVFHMKLEDDTFFKYAFMALGCSIRGFGSCIRPILVVDGAHLKGKYKGVLL 226

[Close]

BLAST of PI0000121 vs. NCBI nr
Match: XP_022157875.1 (uncharacterized protein LOC111024486 [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-05
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 174 KALKIVNSSSHYELDLDFDGHFKYLYMALGVAV----SYVRPILVVDAIHLKGNYKGIEK 232
           +ALK VN  + + + L+ D  FKY +MALG ++    S +RPILVVD  HLKG YKG+  
Sbjct: 41  QALKAVNEGTVFHMKLEDDTFFKYAFMALGCSIRGFGSCIRPILVVDGAHLKGKYKGVLL 100

The following BLAST results are available for this feature:

BLAST of PI0000121 vs.


Match Name	E-value	Identity	Description

BLAST of PI0000121 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DL12	2.1e-07	48.39	uncharacterized protein LOC111022077 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1D1Z5	4.0e-06	50.00	protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1DU12	6.9e-06	50.00	protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1DS25	6.9e-06	44.44	protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1DU86	6.9e-06	50.00	uncharacterized protein LOC111024486 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of PI0000121 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154930.1	4.4e-07	48.39	uncharacterized protein LOC111022077 [Momordica charantia]	[more]
XP_022147769.1	8.3e-06	50.00	protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia]	[more]
XP_022156943.1	1.4e-05	44.44	protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia]	[more]
XP_022157237.1	1.4e-05	50.00	protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia]	[more]
XP_022157875.1	1.4e-05	50.00	uncharacterized protein LOC111024486 [Momordica charantia]	[more]

BLAST of PI0000121 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0000121.1	PI0000121.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding