PI0000107 (gene) Melon (PI 482460) v1

Overview


Name	PI0000107
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ty3/gypsy retrotransposon protein
Location	chr04: 25977728 .. 25978018 (-)
RNA-Seq Expression	PI0000107
Synteny	PI0000107

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTTTGTAGAGTCCTATGGAGTTGATGAGATACCTACAGTCGCTAAATCGATTCCAGCACTGTTGACTAAGTTTGAGGATGTGTTTGATTGGCCAGAGGAACTCCTACCAAGAAGGAGTATTAAACATATCCATTTGAAAAACGAGACTGATCCAGTCAATGTACGACCACATCATTATGCATATAAACAAAATGAAGAAATAGACAAGTTAGTGGATGAGATGTTAGCTTCAGGGGTTATTCGCCCTAGTACGAGTCCATACTCGAGCCCTGTCCTTTTGGTGTAG

mRNA sequence

ATGACTTTTGTAGAGTCCTATGGAGTTGATGAGATACCTACAGTCGCTAAATCGATTCCAGCACTGTTGACTAAGTTTGAGGATGTGTTTGATTGGCCAGAGGAACTCCTACCAAGAAGGAGTATTAAACATATCCATTTGAAAAACGAGACTGATCCAGTCAATGTACGACCACATCATTATGCATATAAACAAAATGAAGAAATAGACAAGTTAGTGGATGAGATGTTAGCTTCAGGGGTTATTCGCCCTAGTACGAGTCCATACTCGAGCCCTGTCCTTTTGGTGTAG

Coding sequence (CDS)

ATGACTTTTGTAGAGTCCTATGGAGTTGATGAGATACCTACAGTCGCTAAATCGATTCCAGCACTGTTGACTAAGTTTGAGGATGTGTTTGATTGGCCAGAGGAACTCCTACCAAGAAGGAGTATTAAACATATCCATTTGAAAAACGAGACTGATCCAGTCAATGTACGACCACATCATTATGCATATAAACAAAATGAAGAAATAGACAAGTTAGTGGATGAGATGTTAGCTTCAGGGGTTATTCGCCCTAGTACGAGTCCATACTCGAGCCCTGTCCTTTTGGTGTAG

Protein sequence

MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIKHIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV

Homology

[Close]

BLAST of PI0000107 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.7e-06
Identity = 25/77 (32.47%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 21  ALLTKFEDVFDWP-EELLPRRSIKHIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLAS 80
           +LL +F  +F+ P   +    ++K     N  DP+  + + Y      E+++ +DE+L  
Sbjct: 90  SLLGEFPRIFEPPLSGMSVETAVKAEIRTNTQDPIYAKSYPYPVNMRGEVERQIDELLQD 149

Query: 81  GVIRPSTSPYSSPVLLV 97
           G+IRPS SPY+SP+ +V
Sbjct: 150 GIIRPSNSPYNSPIWIV 166

[Close]

BLAST of PI0000107 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 7.0e-04
Identity = 26/79 (32.91%), Postives = 41/79 (51.90%), Query Frame = 0


Query: 19  IPALLTKFEDV-FDWPEELLPRRSIKHIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEML 78
           +  LL KF ++ +   E+L    +IKH+       P+  + +  A     E++  V EML
Sbjct: 171 LKGLLNKFRNLEYKEGEKLTFTNTIKHVLNTTHNSPIYSKQYPLAQTHEIEVENQVQEML 230

Query: 79  ASGVIRPSTSPYSSPVLLV 97
             G+IR S SPY+SP  +V
Sbjct: 231 NQGLIRESNSPYNSPTWVV 249

[Close]

BLAST of PI0000107 vs. ExPASy TrEMBL
Match: A0A5A7VHH6 (Retrovirus-related Pol polyprotein from transposon opus OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00040 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 7.7e-30
Identity = 70/97 (72.16%), Postives = 81/97 (83.51%), Query Frame = 0


Query: 1   MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIK-HIHLKNETDPVNVRPH 60
           MTF E YGVD+I TV KSIP LL ++EDVFDWPEEL P+  I+ HIHLKN T+P+NVR +
Sbjct: 123 MTFAEFYGVDDILTVNKSIPELLGRYEDVFDWPEELPPKGGIEHHIHLKNSTNPINVRLY 182

Query: 61  HYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV 97
            YAY+Q EE++KLVDEMLASGVIR STSPY SPVLLV
Sbjct: 183 RYAYQQKEEMEKLVDEMLASGVIRLSTSPYPSPVLLV 219

[Close]

BLAST of PI0000107 vs. ExPASy TrEMBL
Match: A0A5A7VAW7 (Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001230 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.0e-29
Identity = 71/97 (73.20%), Postives = 79/97 (81.44%), Query Frame = 0


Query: 1   MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIK-HIHLKNETDPVNVRPH 60
           MTF E Y VDEIPTV +SIP LL KFE+ FDW EELLPR SI+ HIHLK   DP+NVRP+
Sbjct: 92  MTFAELYEVDEIPTVNESIPTLLAKFENAFDWQEELLPRPSIEHHIHLKKGIDPINVRPY 151

Query: 61  HYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV 97
            YAY+Q EE++KLVDEMLA GVIR STSPYSS VLLV
Sbjct: 152 QYAYQQKEEMEKLVDEMLAPGVIRLSTSPYSSHVLLV 188

[Close]

BLAST of PI0000107 vs. ExPASy TrEMBL
Match: A0A5A7SPQ8 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00710 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.0e-26
Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = 0


Query: 1   MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIK-HIHLKNETDPVNVRPH 60
           + F E YG+D +PT+ KSIP +L K+ED+F WP  L P R+I+ HIHLK  T+ VNVRP+
Sbjct: 438 IAFAELYGIDAVPTIHKSIPTVLAKYEDIFYWPGGLPPHRAIEHHIHLKKGTNLVNVRPY 497

Query: 61  HYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLL 96
            YAY+Q EE ++LVDEM+ASG+I+PSTSPYSSPVLL
Sbjct: 498 RYAYQQKEETERLVDEMMASGIIKPSTSPYSSPVLL 533

[Close]

BLAST of PI0000107 vs. ExPASy TrEMBL
Match: A0A5A7TE05 (Ty3-gypsy retroelement transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G001330 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.8e-26
Identity = 62/97 (63.92%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 1   MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSI-KHIHLKNETDPVNVRPH 60
           +T  E Y  + IPT+ KSIPALL K+EDVF+WPEEL P+  +  HIHLK  T+PVNVRP+
Sbjct: 23  LTMEELYDEEVIPTICKSIPALLAKYEDVFNWPEELPPKTDVGYHIHLKKGTNPVNVRPY 82

Query: 61  HYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV 97
            YA++Q EE++K VDEML SGVI PS +PYSSPVLLV
Sbjct: 83  RYAHQQKEEMEKFVDEMLTSGVIPPSNNPYSSPVLLV 119

[Close]

BLAST of PI0000107 vs. ExPASy TrEMBL
Match: A0A5A7TQA2 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G00260 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.0e-26
Identity = 64/97 (65.98%), Postives = 77/97 (79.38%), Query Frame = 0


Query: 1  MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIK-HIHLKNETDPVNVRPH 60
          MT  E YGVDE+ T+ +SI  +L KF DVF+WPE+L  RRSI+ HIHLK +T+P+NVRP 
Sbjct: 1  MTMAEFYGVDEVYTIEESILVVLDKFADVFNWPEKLPARRSIEHHIHLKKDTNPINVRPS 60

Query: 61 HYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV 97
           YAY+Q EE+DK V EML+SGVIRPS SPYSS VLLV
Sbjct: 61 RYAYQQKEEMDKRVGEMLSSGVIRPSISPYSSLVLLV 97

[Close]

BLAST of PI0000107 vs. NCBI nr
Match: KAA0066630.1 (Retrovirus-related Pol polyprotein from transposon opus [Cucumis melo var. makuwa] >TYK04077.1 Retrovirus-related Pol polyprotein from transposon opus [Cucumis melo var. makuwa])

HSP 1 Score: 139.4 bits (350), Expect = 1.6e-29
Identity = 70/97 (72.16%), Postives = 81/97 (83.51%), Query Frame = 0


Query: 1   MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIK-HIHLKNETDPVNVRPH 60
           MTF E YGVD+I TV KSIP LL ++EDVFDWPEEL P+  I+ HIHLKN T+P+NVR +
Sbjct: 123 MTFAEFYGVDDILTVNKSIPELLGRYEDVFDWPEELPPKGGIEHHIHLKNSTNPINVRLY 182

Query: 61  HYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV 97
            YAY+Q EE++KLVDEMLASGVIR STSPY SPVLLV
Sbjct: 183 RYAYQQKEEMEKLVDEMLASGVIRLSTSPYPSPVLLV 219

[Close]

BLAST of PI0000107 vs. NCBI nr
Match: KAA0065442.1 (peroxidase 64 [Cucumis melo var. makuwa])

HSP 1 Score: 139.0 bits (349), Expect = 2.1e-29
Identity = 71/97 (73.20%), Postives = 79/97 (81.44%), Query Frame = 0


Query: 1   MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIK-HIHLKNETDPVNVRPH 60
           MTF E Y VDEIPTV +SIP LL KFE+ FDW EELLPR SI+ HIHLK   DP+NVRP+
Sbjct: 92  MTFAELYEVDEIPTVNESIPTLLAKFENAFDWQEELLPRPSIEHHIHLKKGIDPINVRPY 151

Query: 61  HYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV 97
            YAY+Q EE++KLVDEMLA GVIR STSPYSS VLLV
Sbjct: 152 QYAYQQKEEMEKLVDEMLAPGVIRLSTSPYSSHVLLV 188

[Close]

BLAST of PI0000107 vs. NCBI nr
Match: KAA0031986.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK16806.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 2.2e-26
Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = 0


Query: 1   MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIK-HIHLKNETDPVNVRPH 60
           + F E YG+D +PT+ KSIP +L K+ED+F WP  L P R+I+ HIHLK  T+ VNVRP+
Sbjct: 438 IAFAELYGIDAVPTIHKSIPTVLAKYEDIFYWPGGLPPHRAIEHHIHLKKGTNLVNVRPY 497

Query: 61  HYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLL 96
            YAY+Q EE ++LVDEM+ASG+I+PSTSPYSSPVLL
Sbjct: 498 RYAYQQKEETERLVDEMMASGIIKPSTSPYSSPVLL 533

[Close]

BLAST of PI0000107 vs. NCBI nr
Match: KAA0041188.1 (ty3-gypsy retroelement transposase [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 3.7e-26
Identity = 62/97 (63.92%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 1   MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSI-KHIHLKNETDPVNVRPH 60
           +T  E Y  + IPT+ KSIPALL K+EDVF+WPEEL P+  +  HIHLK  T+PVNVRP+
Sbjct: 23  LTMEELYDEEVIPTICKSIPALLAKYEDVFNWPEELPPKTDVGYHIHLKKGTNPVNVRPY 82

Query: 61  HYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV 97
            YA++Q EE++K VDEML SGVI PS +PYSSPVLLV
Sbjct: 83  RYAHQQKEEMEKFVDEMLTSGVIPPSNNPYSSPVLLV 119

[Close]

BLAST of PI0000107 vs. NCBI nr
Match: KAA0043595.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 8.2e-26
Identity = 64/97 (65.98%), Postives = 77/97 (79.38%), Query Frame = 0


Query: 1  MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIK-HIHLKNETDPVNVRPH 60
          MT  E YGVDE+ T+ +SI  +L KF DVF+WPE+L  RRSI+ HIHLK +T+P+NVRP 
Sbjct: 1  MTMAEFYGVDEVYTIEESILVVLDKFADVFNWPEKLPARRSIEHHIHLKKDTNPINVRPS 60

Query: 61 HYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV 97
           YAY+Q EE+DK V EML+SGVIRPS SPYSS VLLV
Sbjct: 61 RYAYQQKEEMDKRVGEMLSSGVIRPSISPYSSLVLLV 97

The following BLAST results are available for this feature:

BLAST of PI0000107 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8I7P9	5.7e-06	32.47	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P20825	7.0e-04	32.91	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]

BLAST of PI0000107 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VHH6	7.7e-30	72.16	Retrovirus-related Pol polyprotein from transposon opus OS=Cucumis melo var. mak...	[more]
A0A5A7VAW7	1.0e-29	73.20	Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001230 ...	[more]
A0A5A7SPQ8	1.0e-26	62.50	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7TE05	1.8e-26	63.92	Ty3-gypsy retroelement transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A5A7TQA2	4.0e-26	65.98	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of PI0000107 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066630.1	1.6e-29	72.16	Retrovirus-related Pol polyprotein from transposon opus [Cucumis melo var. makuw...	[more]
KAA0065442.1	2.1e-29	73.20	peroxidase 64 [Cucumis melo var. makuwa]	[more]
KAA0031986.1	2.2e-26	62.50	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK16806.1 Tran...	[more]
KAA0041188.1	3.7e-26	63.92	ty3-gypsy retroelement transposase [Cucumis melo var. makuwa]	[more]
KAA0043595.1	8.2e-26	65.98	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0000107 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 39..96 e-value: 8.8E-15 score: 56.6
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 17..96
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 17..96
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 22..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0000107.1	PI0000107.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004601	peroxidase activity