PI0000002 (gene) Melon (PI 482460) v1

Overview


Name	PI0000002
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	THO complex subunit 4A-like
Location	chr11: 6487894 .. 6492191 (+)
RNA-Seq Expression	PI0000002
Synteny	PI0000002

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAATCAGCCTCCATCCCCAAATCTCTTTTCCCAAACCCTTTCACCATCGACGAATCTCCGAAACCCTAATTTCCCATTTTCTTCTGTCTTCCTTTTCGATTACTCCTTCACTGTGTTTCCGTTCAATTTCTCTTCAACTATGGCCGCTCCTTTGGATATGAGTCTTGACGATATCATAAAGAACAACAAGAAATCCAGATCCGGAAATTCTAGAGGTCGCGGAAGAGGTTCTGGACCTGGTCCCGTCCGTCGATTCCCCAATCGCGCCGCTAACCGCACACCTTATTCCGCTCCCAAGGTATGGTTTCGAGTTTCTCGAGGTTTATGTCGATTTGGCCCCTTGAATTCTGGATTTAGGTTTTGTTTTGAACGTTTTTGATTTGGTAAACGTTAGGCCCCGGAGACAACGTGGCAACATGATATGTTCGCCGATCCGAGTTCTGGATTCCCTGTGCAAGGTGGGCGAGCTTCTGCTATTCAAACTGGGACTAAGCTTTATATATCTAATTTGGATTACGGTGTTTCTAACGAAGATATTAAGGTATTTATACCTCTTGTGGATGAGTGGAACGAAAAGATATATTTCCTTTTTGTTTGCTTTTGTTGACAGTCTTTGTGTTTGCAGGAACTTTTTTCTGAAGTCGGTGATATGAAACGCCACGGAATCCATTATGACAAAAGTGGGAGATCCAAGGTATCTTACGAGGCCTGGAATAAGATACTGGTTCTTGTGCATTATCTATTTTTGGGCGAAGTTAAGAAATTCTCTTTGTCTGCAGGGAACAGCGGAAGTAGTTTTCTCACGACGACTAGATGCTGTTGCGGCTGTCAAGAAGTACAACAACGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACGCCTGCTGTTAATCCTACCGCTGCTGTGAACCCTTTCGAAAATTCAAATGGGGCTCCGAGAAGGTATAAATCCTATTATGTTTTCATGCCTAATCATTGAAATTAGAACACGGATTTGTTTATAATTGGATGGAATAGTTAACTACATCACCATACTATAACATAATATATCATGAATTGCAAGTCGTGTTTGGATATCAGTTGATTGATATTAGCTGTTTTCAGACTCTTGAGTCTGATTATAACTGTTAAAATTTTCTTCCCCTTGTTTTGGTGACCTTTATTTCTGCTTATAAAGAATTTGTATTACGGTCTCTTCATTTGTTGTAGTAGTGAACTTATGGTATATTTTAGGTGAAGTATGCTGTTGTATGTCTTCTCTGGGAAATTTGTCTCTGATACAGACAAATATGGCATATGAATTCCGACTTGAATCACTTTTTTACATATTTGTATAATGATACAAGACAAAGATGGTTGGAGCCATTTTTTTTCATTTGTAGTGTGCCCCTTGTATTCAAATCTCTTTATATTTTGAGCTCAGTTTATTTGGCTTTGTTTTACATTTGTTTATATAGTCAGCAGTACCATCCTCTGAGCCATCCATATCATAGTGACATTCATTTTATAACGAAACAGGCAGCAAGGTAGGGGTGGTCTGCCATCACGTCAACGTGGTCGTGGTTTTGGAAGGGGGCGTGGGCGGGGAAGAGGCCCAAGTGAAAAGGTTTCTGCTGAAGATCTTGATGCCGACTTGGAAAAGTATCATGCTGAGTCTATGCAGATAAATTAGTTGGTTCTTATATATGCTTTTGGTTCGACGAGCACCATCTGTTCTCTGTATCACCACCATTGTCTAGACTTGGCAGAAAAGGGCTATAGTTTTTCCGTGAATTGGTTTGAATTTCTTTACAGCTTTCAGGCTTTCTATTGTTAGCTTTCGTATGACTTCAGCACGGTAATGTAATTGACGAACAGTAGTCAGTGTGTACTTGCTTTCATTCATTAAGTCCTTTCTGTTTCATTTAATGAGTTGGGAATCAAAGGATCTACTATTTCCCTTAGCCTGATCACATCTACGAGGGTGACATTGGTTGGAATAAAACGCTGGCTGCTAATTATACAACAAATGAGTTGCGGTTCCCCATTGAGGTAGATGTCTATTTTTGTGCTGCTAATTTCCATATTTTTCTCTCATGATTGTAACTAATGATGTTTCTCTTTTAATTTTTCTTCTCAGGGAACCTCAACTCAATAAATCTAATATGTGTAGGCATTGAACCGAGAGTTGGCTAACGTGCTAAAAGATGAACAGTCTTCATAGCTATGGGATCCGACTCGAGTCAAATGAAATTAAGAAATTTCCAAGATGAATAAGCCTTTGTTGGTGTTTGGAATCTTTGCCTGCGTTTTATAGTAAAAATGCCTGATAACAGGTGAGATATCATTATTTTAAAGTAATTGTCGTTCAAATGTGTGCAACGTGGTGGTGGTATTCTACTGCTGTGCTTGTGGAGAAAATCCGCAGAGCAATTTGCCGCAACTCAGAGGCCTGCATATGAGGTACCATACCATCACTGTTGAGGGACAGTATCAAGTTTTTATACTGCTCGAGTGCTAGTCTTGCAACATGATCTCCTTCCTTAGACGATGGATAGCATCATGGCATTTTGACCCTGATCAACGAGCGGTAAAAACTTGGTCTCTTCGGAATCATATGCAATGCATTTACATTTGTTTGAATATTTGAAAACAACCTGCCTGTGGATTGTGTTTGTAGACGAATATGTGTAGGGGTAAGGAGTAATGCCATTGGATTTTCATATGATTCTTTTCATGACATATAGGTATCAATAGCGTAAATAGGTATGTTGATATCAGCTTCTTCATATTTCCATACTCCCCCCGATTAAACTTGAGCCAGTTTTGATGGTTTATTTGTACAAAGCTATAATGTGATATTGACATAATGTGTATGTCGATATCGATTTACGAAGTGTGGTTTATATGGATAATAGGGGGATGTATAGTGTTCTAATTTATAGAAATATTGCGTAGCTGGTCTGAATAGCACAAATTAATATGTATTCTAATAGTATATTGCGATGTTCAATGTGAAATAGAATATCAGACTGGAAGTCTTTTGATTCCATAGTTGAATGTGGATGTATATATGTGATTGCACAATGGAATCAGATTGTGTCACGGCTTTGAAGACAGCTACTCTCCACTTGGAAGCCTTATTTATTTTTTTATCTTTCTAAAAAAGAACAATACCAAACAATCAAACGTTGTTCTTTACACTAAGTCCTCATTTAGGCCTTTGTGTGAAGTTTAGGGTACTTGGAATCTTTTAAATCGGTCTATATCCTATTTTGGCTTGAATCTTGAATCTTATTGTATTTTGGTCCACACTTAAGGTATTGTAGTCTAATCTTTTAAAAGTGTTTAGTTTGATCTTTGCTATTAAATATTTTAGTGAAAAATACCTTTTTGGTGTCTTAGCTTTTCTGGGATAGGTGCGTTTGGTTAAGGGTTTCTGAAATGGTCATTTTGGTCTCGAAGGTGTAAGAATAGGTTTAATAAGAATAGGTTTAATAGGACCTCAAACTGTTAAAAACAAACAGGAAATTGACACCTTGAATTGAAAATAAAAAGGTTTTAAACATAGATTCTTTCTTCTGTTTCTACATGATTCTATTCTCTTTTTTTTTTCTCATTCGCCTCTATCAAGTGTCATTTACCTCTATGTAGCATTCTCCCCATTCTAAAACATCCATCATTGGGTCTCCTCTCTCCAGATGTTTCTTTCTCAATTTTCTCAAGTATTTCGTGAAAGACTCCATTGATTAGGCAACTTTTTACAAGAAATGCAATCTCTTCCCTTTTACTAACTGCTTTGGTTTTCTTATGTGATTTTATACAAAGAAACTCAATTTATTTTTGTCGGGATTGTCAAAATTTTTAATTTTCAAATGGTTTTCATGATGTTAAATTTACGGAGGAAGAATGTAGGAAGAAAATCTTGATACGAGATCCCAATCTCCGAAATCTTCATCCGTAACTCACGTTGCTGCCTATCTGACTCCATATGGATTGAGGGACTTATCCCGTTTCATGAAATTGAATCCAAATTTAGGGCCGACTTGCTCCATCAAGTTGGATATGTGAGATGAAACTAGGGAATCCAATTCCAAGACTCCGTCAAATCCTAATCCTAATTCAGACTCAATTCTGAGTGCAATTTACAAAATCCCCAAGCGAAGTAGTCGGTTCCTTGTAGTAGTAATTCTCGTATTTGATGAAGCATCTGTCGAGGAAGATCCAGTGACGGTGGTAAATTTACAGAGACCCGTTTCTTGAAATTAAACCCAAACACAAACACTTTTTAGATG

mRNA sequence

GAAAATCAGCCTCCATCCCCAAATCTCTTTTCCCAAACCCTTTCACCATCGACGAATCTCCGAAACCCTAATTTCCCATTTTCTTCTGTCTTCCTTTTCGATTACTCCTTCACTGTGTTTCCGTTCAATTTCTCTTCAACTATGGCCGCTCCTTTGGATATGAGTCTTGACGATATCATAAAGAACAACAAGAAATCCAGATCCGGAAATTCTAGAGGTCGCGGAAGAGGTTCTGGACCTGGTCCCGTCCGTCGATTCCCCAATCGCGCCGCTAACCGCACACCTTATTCCGCTCCCAAGGCCCCGGAGACAACGTGGCAACATGATATGTTCGCCGATCCGAGTTCTGGATTCCCTGTGCAAGGTGGGCGAGCTTCTGCTATTCAAACTGGGACTAAGCTTTATATATCTAATTTGGATTACGGTGTTTCTAACGAAGATATTAAGGAACTTTTTTCTGAAGTCGGTGATATGAAACGCCACGGAATCCATTATGACAAAAGTGGGAGATCCAAGGGAACAGCGGAAGTAGTTTTCTCACGACGACTAGATGCTGTTGCGGCTGTCAAGAAGTACAACAACGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACGCCTGCTGTTAATCCTACCGCTGCTGTGAACCCTTTCGAAAATTCAAATGGGGCTCCGAGAAGGCAGCAAGGTAGGGGTGGTCTGCCATCACGTCAACGTGGTCGTGGTTTTGGAAGGGGGCGTGGGCGGGGAAGAGGCCCAAGTGAAAAGGTTTCTGCTGAAGATCTTGATGCCGACTTGGAAAAGTATCATGCTGAGTCTATGCAGATAAATTAGTTGGTTCTTATATATGCTTTTGGTTCGACGAGCACCATCTGTTCTCTGTATCACCACCATTGTCTAGACTTGGCAGAAAAGGGCTATAGTTTTTCCGTGAATTGGTTTGAATTTCTTTACAGCTTTCAGGCTTTCTATTGTTAGCTTTCGTATGACTTCAGCACGGTAATGTAATTGACGAACAGTAGTCAGTGTGTACTTGCTTTCATTCATTAAGTCCTTTCTGTTTCATTTAATGAGTTGGGAATCAAAGGATCTACTATTTCCCTTAGCCTGATCACATCTACGAGGGTGACATTGGTTGGAATAAAACGCTGGCTGCTAATTATACAACAAATGAGTTGCGGTTCCCCATTGAGGGAACCTCAACTCAATAAATCTAATATGTGTAGGCATTGAACCGAGAGTTGGCTAACGTGCTAAAAGATGAACAGTCTTCATAGCTATGGGATCCGACTCGAGTCAAATGAAATTAAGAAATTTCCAAGATGAATAAGCCTTTGTTGGTGTTTGGAATCTTTGCCTGCGTTTTATAGTAAAAATGCCTGATAACAGGTGAGATATCATTATTTTAAAGTAATTGTCGTTCAAATGTGTGCAACGTGGTGGTGGTATTCTACTGCTGTGCTTGTGGAGAAAATCCGCAGAGCAATTTGCCGCAACTCAGAGGCCTGCATATGAGGTACCATACCATCACTGTTGAGGGACAGTATCAAGTTTTTATACTGCTCGAGTGCTAGTCTTGCAACATGATCTCCTTCCTTAGACGATGGATAGCATCATGGCATTTTGACCCTGATCAACGAGCGGTAAAAACTTGGTCTCTTCGGAATCATATGCAATGCATTTACATTTGTTTGAATATTTGAAAACAACCTGCCTGTGGATTGTGTTTGTAGACGAATATGTGTAGGGGTAAGGAGTAATGCCATTGGATTTTCATATGATTCTTTTCATGACATATAGGTATCAATAGCGTAAATAGGTATGTTGATATCAGCTTCTTCATATTTCCATACTCCCCCCGATTAAACTTGAGCCAGTTTTGATGGTTTATTTGTACAAAGCTATAATGTGATATTGACATAATGTGTATGTCGATATCGATTTACGAAGTGTGGTTTATATGGATAATAGGGGGATGTATAGTGTTCTAATTTATAGAAATATTGCGTAGCTGGTCTGAATAGCACAAATTAATATGTATTCTAATAGTATATTGCGATGTTCAATGTGAAATAGAATATCAGACTGGAAGTCTTTTGATTCCATAGTTGAATGTGGATGTATATATGTGATTGCACAATGGAATCAGATTGTGTCACGGCTTTGAAGACAGCTACTCTCCACTTGGAAGCCTTATTTATTTTTTTATCTTTCTAAAAAAGAACAATACCAAACAATCAAACGTTGTTCTTTACACTAAGTCCTCATTTAGGCCTTTGTGTGAAGTTTAGGGTACTTGGAATCTTTTAAATCGGTCTATATCCTATTTTGGCTTGAATCTTGAATCTTATTGTATTTTGGTCCACACTTAAGGTATTGTAGTCTAATCTTTTAAAAGTGTTTAGTTTGATCTTTGCTATTAAATATTTTAGTGAAAAATACCTTTTTGGTGTCTTAGCTTTTCTGGGATAGGTGCGTTTGGTTAAGGGTTTCTGAAATGGTCATTTTGGTCTCGAAGGTGTAAGAATAGGTTTAATAAGAATAGGTTTAATAGGACCTCAAACTGTTAAAAACAAACAGGAAATTGACACCTTGAATTGAAAATAAAAAGGTTTTAAACATAGATTCTTTCTTCTGTTTCTACATGATTCTATTCTCTTTTTTTTTTCTCATTCGCCTCTATCAAGTGTCATTTACCTCTATGTAGCATTCTCCCCATTCTAAAACATCCATCATTGGGTCTCCTCTCTCCAGATGTTTCTTTCTCAATTTTCTCAAGTATTTCGTGAAAGACTCCATTGATTAGGCAACTTTTTACAAGAAATGCAATCTCTTCCCTTTTACTAACTGCTTTGGTTTTCTTATGTGATTTTATACAAAGAAACTCAATTTATTTTTGTCGGGATTGTCAAAATTTTTAATTTTCAAATGGTTTTCATGATGTTAAATTTACGGAGGAAGAATGTAGGAAGAAAATCTTGATACGAGATCCCAATCTCCGAAATCTTCATCCGTAACTCACGTTGCTGCCTATCTGACTCCATATGGATTGAGGGACTTATCCCGTTTCATGAAATTGAATCCAAATTTAGGGCCGACTTGCTCCATCAAGTTGGATATGTGAGATGAAACTAGGGAATCCAATTCCAAGACTCCGTCAAATCCTAATCCTAATTCAGACTCAATTCTGAGTGCAATTTACAAAATCCCCAAGCGAAGTAGTCGGTTCCTTGTAGTAGTAATTCTCGTATTTGATGAAGCATCTGTCGAGGAAGATCCAGTGACGGTGGTAAATTTACAGAGACCCGTTTCTTGAAATTAAACCCAAACACAAACACTTTTTAGATG

Coding sequence (CDS)

ATGGCCGCTCCTTTGGATATGAGTCTTGACGATATCATAAAGAACAACAAGAAATCCAGATCCGGAAATTCTAGAGGTCGCGGAAGAGGTTCTGGACCTGGTCCCGTCCGTCGATTCCCCAATCGCGCCGCTAACCGCACACCTTATTCCGCTCCCAAGGCCCCGGAGACAACGTGGCAACATGATATGTTCGCCGATCCGAGTTCTGGATTCCCTGTGCAAGGTGGGCGAGCTTCTGCTATTCAAACTGGGACTAAGCTTTATATATCTAATTTGGATTACGGTGTTTCTAACGAAGATATTAAGGAACTTTTTTCTGAAGTCGGTGATATGAAACGCCACGGAATCCATTATGACAAAAGTGGGAGATCCAAGGGAACAGCGGAAGTAGTTTTCTCACGACGACTAGATGCTGTTGCGGCTGTCAAGAAGTACAACAACGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACGCCTGCTGTTAATCCTACCGCTGCTGTGAACCCTTTCGAAAATTCAAATGGGGCTCCGAGAAGGCAGCAAGGTAGGGGTGGTCTGCCATCACGTCAACGTGGTCGTGGTTTTGGAAGGGGGCGTGGGCGGGGAAGAGGCCCAAGTGAAAAGGTTTCTGCTGAAGATCTTGATGCCGACTTGGAAAAGTATCATGCTGAGTCTATGCAGATAAATTAG

Protein sequence

MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFPVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVNPTAAVNPFENSNGAPRRQQGRGGLPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

Homology

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BLAST of PI0000002 vs. ExPASy Swiss-Prot
Match: Q8L773 (THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.8e-69
Identity = 158/251 (62.95%), Postives = 189/251 (75.30%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPE 60
           M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TTWQHDMFADPSSGFPVQGGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHG 120
           +TW HDMF+D S     + GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVG++KR+ 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVNPTAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NPFENSNGAP-RRQQGRGGLPSRQRG--------RGFGRGRGRGRGPSEKVSAEDLDADL 238
           N   NSNGAP R  QGRGG   +QRG         G GRGR  G+GP+EK+SAEDLDADL
Sbjct: 181 N--GNSNGAPWRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADL 240

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BLAST of PI0000002 vs. ExPASy Swiss-Prot
Match: Q8L719 (THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 4.8e-62
Identity = 159/290 (54.83%), Postives = 181/290 (62.41%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-P 60
           M+  LDMSLDDIIK+N+K      RG            G GS  GP RRF NR   RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSAP----KAPETTWQHDMFADPSSGFPVQG-------GRASAIQTGTKLYISNLDYGVS 120
           YS P    +A +  WQ+D+FA  +S     G       G  S+I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKI 180
           NEDIKELFSEVGD+KR+GIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNISTPAVNPTAAVN-PF----------ENSNG-------APRRQQGRGGLPSRQR 236
           EIVGTN+S PA+   A    PF          EN NG          R +GRGG   R R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

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BLAST of PI0000002 vs. ExPASy Swiss-Prot
Match: Q6NQ72 (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 4.2e-42
Identity = 125/293 (42.66%), Postives = 161/293 (54.95%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGN---SRGRGR-----GSGPGPVRRFPNRAANRTPYS-- 60
           M+  L+M+LD+I+K  K +RSG    SRGRGR     G G GP RR P  A N  P S  
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGGGGRGAGPARRGP-LAVNARPSSFT 60

Query: 61  ----APKAPETTWQHDMFADPSSGFPVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFS 120
                 +     WQ  +F D      ++   AS ++ GT+L+++NLD GV+NEDI+ELFS
Sbjct: 61  INKPVRRVRSLPWQSGLFED-----GLRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFS 120

Query: 121 EVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNIST 180
           E+G+++R+ IHYDK+GR  GTAEVV+ RR DA  A+KKYNNV LDG+PM++EI+G N S+
Sbjct: 121 EIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSS 180

Query: 181 PA-------VN--------------------------------PTAAVN---PFENSNGA 235
            A       VN                                P   V+   P  N  G 
Sbjct: 181 EAPLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGG 240

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BLAST of PI0000002 vs. ExPASy Swiss-Prot
Match: Q3T0I4 (THO complex subunit 4 OS=Bos taurus OX=9913 GN=ALYREF PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-41
Identity = 118/265 (44.53%), Postives = 151/265 (56.98%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRG-------------------SGPGPVRRFPN 60
           MA  +DMSLDDIIK N+  R G   GRGRG                    G GP+R  P 
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPA 60

Query: 61  RA--------ANR-TPYSAPKAPETTWQHDMFADPSSGFPVQGGRASAIQTGTKLYISNL 120
            A         NR  PYS PK     WQHD+F    SGF    G  + ++TG KL +SNL
Sbjct: 61  IARGAAGGGGRNRPAPYSRPKQLPDKWQHDLF---DSGF----GGGAGVETGGKLLVSNL 120

Query: 121 DYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDG 180
           D+GVS+ DI+ELF+E G +K+  +HYD+SGRS GTA+V F R+ DA+ A+K+YN V LDG
Sbjct: 121 DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG 180

Query: 181 KPMKIEIVGTNISTPAVNPTAAVNPFENSNGAPRRQQGRGGL----PSRQRGRGFGRGRG 232
           +PM I++V + I T    P  +VN      G   R +G GG      +R+  RG  RGRG
Sbjct: 181 RPMNIQLVTSQIDTQR-RPAQSVN-----RGGMTRNRGSGGFGGGGGTRRGTRGGSRGRG 240

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BLAST of PI0000002 vs. ExPASy Swiss-Prot
Match: O08583 (THO complex subunit 4 OS=Mus musculus OX=10090 GN=Alyref PE=1 SV=3)

HSP 1 Score: 170.6 bits (431), Expect = 2.1e-41
Identity = 112/258 (43.41%), Postives = 146/258 (56.59%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRG-------------------SGPGPVRRFPN 60
           MA  +DMSLDDIIK N+  R G   GRGRG                    G GP+R  P 
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGAVQAAARVNRGGGPMRNRPA 60

Query: 61  RA-------ANR-TPYSAPKAPETTWQHDMFADPSSGFPVQGGRASAIQTGTKLYISNLD 120
            A        NR  PYS PK     WQHD+F    SGF    G  + ++TG KL +SNLD
Sbjct: 61  IARGAAGGGRNRPAPYSRPKQLPDKWQHDLF---DSGF----GGGAGVETGGKLLVSNLD 120

Query: 121 YGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGK 180
           +GVS+ DI+ELF+E G +K+  +HYD+SGRS GTA+V F R+ DA+ A+K+YN V LDG+
Sbjct: 121 FGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR 180

Query: 181 PMKIEIVGTNISTPAVNPTAAVNPFENSNGAPRRQQGRGGLPSRQRGRGFGRGRGRGRGP 232
           PM I++V + I T    P  ++N    +        G GG     RG   GRGRG GR  
Sbjct: 181 PMNIQLVTSQIDTQR-RPAQSINRGGMTRNRGSGGFGGGGTRRGTRGGSRGRGRGTGRNS 240

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BLAST of PI0000002 vs. ExPASy TrEMBL
Match: A0A0A0KBU2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G193610 PE=4 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 3.5e-124
Identity = 233/237 (98.31%), Postives = 233/237 (98.31%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFPVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120
           HDMFADPSSGF VQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK
Sbjct: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVNPTAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAV PTAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGLPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238
           SNGAPRRQQGRGG PSRQRG GFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237

[Close]

BLAST of PI0000002 vs. ExPASy TrEMBL
Match: A0A1S3BK70 (THO complex subunit 4A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490589 PE=4 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 2.3e-123
Identity = 232/237 (97.89%), Postives = 233/237 (98.31%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFPVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120
           HDMFADPSSGF  QGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK
Sbjct: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVNPTAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAV PTAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGLPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238
           SNGAPRRQQGRGG PSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237

[Close]

BLAST of PI0000002 vs. ExPASy TrEMBL
Match: A0A6J1G721 (THO complex subunit 4A-like OS=Cucurbita moschata OX=3662 GN=LOC111451345 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 1.5e-114
Identity = 220/238 (92.44%), Postives = 224/238 (94.12%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGISRGRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFPVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120
           HDMF D  +GFPVQ GRAS+IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKR+GIHYDK
Sbjct: 61  HDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVNPTAAVNPFEN 180
           SGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNI+T AV P AAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGLPSRQR-GRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238
            NGAPRRQQGRGGLPSRQR GRG GRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 FNGAPRRQQGRGGLPSRQRGGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238

[Close]

BLAST of PI0000002 vs. ExPASy TrEMBL
Match: A0A6J1L1M6 (THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111499593 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.3e-114
Identity = 219/238 (92.02%), Postives = 223/238 (93.70%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGISRGRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFPVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120
           HDMF D  +GFPVQ GRAS+IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKR+GIHYDK
Sbjct: 61  HDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVNPTAAVNPFEN 180
           SGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNI+T AV P AAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGLPSRQR-GRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238
            NG PRRQQGRGGLPSRQR GRG GRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 FNGVPRRQQGRGGLPSRQRGGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238

[Close]

BLAST of PI0000002 vs. ExPASy TrEMBL
Match: A0A6J1D4W8 (THO complex subunit 4A-like OS=Momordica charantia OX=3673 GN=LOC111017043 PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 2.3e-112
Identity = 219/243 (90.12%), Postives = 224/243 (92.18%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSR-GRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTW 60
           MAAPLDMSLDDIIKNNKKSRSGNSR GRGR SGPGPVRRFPNRAANRTPY+APKAPET W
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60

Query: 61  QHDMFADPSSGFPVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYD 120
           QHDMF D +SGF VQ GRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMK + IHYD
Sbjct: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKHYSIHYD 120

Query: 121 KSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVNPTAAVNPFE 180
           KSGRSKGTAEVVFSRR+DAVAAVKKYNNVQLDGKPMKIEIVGTNI+TPA  PTAAV PFE
Sbjct: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180

Query: 181 NSNGAPRRQQGRGGLPSRQR-----GRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 238
           N NG PRRQQGRGGLPSRQR     GRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM
Sbjct: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 240

[Close]

BLAST of PI0000002 vs. NCBI nr
Match: XP_004143092.1 (THO complex subunit 4A [Cucumis sativus] >KGN47175.1 hypothetical protein Csa_020836 [Cucumis sativus])

HSP 1 Score: 454.1 bits (1167), Expect = 7.2e-124
Identity = 233/237 (98.31%), Postives = 233/237 (98.31%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFPVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120
           HDMFADPSSGF VQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK
Sbjct: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVNPTAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAV PTAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGLPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238
           SNGAPRRQQGRGG PSRQRG GFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237

[Close]

BLAST of PI0000002 vs. NCBI nr
Match: XP_008448384.1 (PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_008448386.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_008448387.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_016900540.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo])

HSP 1 Score: 451.4 bits (1160), Expect = 4.7e-123
Identity = 232/237 (97.89%), Postives = 233/237 (98.31%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFPVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120
           HDMFADPSSGF  QGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK
Sbjct: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVNPTAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAV PTAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGLPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238
           SNGAPRRQQGRGG PSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237

[Close]

BLAST of PI0000002 vs. NCBI nr
Match: XP_038901991.1 (THO complex subunit 4A-like [Benincasa hispida])

HSP 1 Score: 448.0 bits (1151), Expect = 5.2e-122
Identity = 230/237 (97.05%), Postives = 231/237 (97.47%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFPVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120
           HDMFADP SGF  QGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKR+GIHYDK
Sbjct: 61  HDMFADPGSGFAGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVNPTAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAV PTAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGLPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238
            NGAPRRQQGRGG PSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 LNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237

[Close]

BLAST of PI0000002 vs. NCBI nr
Match: KAG7035419.1 (THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 422.2 bits (1084), Expect = 3.0e-114
Identity = 220/238 (92.44%), Postives = 224/238 (94.12%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQ
Sbjct: 9   MAAPLDMSLDDIIKNNKKSRSGISRGRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTWQ 68

Query: 61  HDMFADPSSGFPVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120
           HDMF D  +GFPVQ GRAS+IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKR+GIHYDK
Sbjct: 69  HDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 128

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVNPTAAVNPFEN 180
           SGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNI+T AV P AAVNPFEN
Sbjct: 129 SGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFEN 188

Query: 181 SNGAPRRQQGRGGLPSRQR-GRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238
            NGAPRRQQGRGGLPSRQR GRG GRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 189 FNGAPRRQQGRGGLPSRQRGGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 246

[Close]

BLAST of PI0000002 vs. NCBI nr
Match: XP_022947495.1 (THO complex subunit 4A-like [Cucurbita moschata])

HSP 1 Score: 422.2 bits (1084), Expect = 3.0e-114
Identity = 220/238 (92.44%), Postives = 224/238 (94.12%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGISRGRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFPVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120
           HDMF D  +GFPVQ GRAS+IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKR+GIHYDK
Sbjct: 61  HDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVNPTAAVNPFEN 180
           SGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNI+T AV P AAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGLPSRQR-GRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238
            NGAPRRQQGRGGLPSRQR GRG GRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 FNGAPRRQQGRGGLPSRQRGGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238

[Close]

BLAST of PI0000002 vs. TAIR 10
Match: AT5G59950.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 263.8 bits (673), Expect = 1.3e-70
Identity = 158/251 (62.95%), Postives = 189/251 (75.30%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPE 60
           M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TTWQHDMFADPSSGFPVQGGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHG 120
           +TW HDMF+D S     + GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVG++KR+ 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVNPTAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NPFENSNGAP-RRQQGRGGLPSRQRG--------RGFGRGRGRGRGPSEKVSAEDLDADL 238
           N   NSNGAP R  QGRGG   +QRG         G GRGR  G+GP+EK+SAEDLDADL
Sbjct: 181 N--GNSNGAPWRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADL 240

[Close]

BLAST of PI0000002 vs. TAIR 10
Match: AT5G59950.5 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 263.5 bits (672), Expect = 1.7e-70
Identity = 158/252 (62.70%), Postives = 189/252 (75.00%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPE 60
           M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TTWQHDMFADPSSGFPVQGGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHG 120
           +TW HDMF+D S     + GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVG++KR+ 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVNPTAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NPFENSNGAP--RRQQGRGGLPSRQRG--------RGFGRGRGRGRGPSEKVSAEDLDAD 238
           N   NSNGAP  R  QGRGG   +QRG         G GRGR  G+GP+EK+SAEDLDAD
Sbjct: 181 N--GNSNGAPWSRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDAD 240

[Close]

BLAST of PI0000002 vs. TAIR 10
Match: AT5G59950.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 257.7 bits (657), Expect = 9.2e-69
Identity = 157/251 (62.55%), Postives = 188/251 (74.90%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPE 60
           M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY +  APE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQS--APE 60

Query: 61  TTWQHDMFADPSSGFPVQGGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHG 120
           +TW HDMF+D S     + GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVG++KR+ 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVNPTAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NPFENSNGAP-RRQQGRGGLPSRQRG--------RGFGRGRGRGRGPSEKVSAEDLDADL 238
           N   NSNGAP R  QGRGG   +QRG         G GRGR  G+GP+EK+SAEDLDADL
Sbjct: 181 N--GNSNGAPWRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADL 240

[Close]

BLAST of PI0000002 vs. TAIR 10
Match: AT5G02530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 239.2 bits (609), Expect = 3.4e-63
Identity = 159/290 (54.83%), Postives = 181/290 (62.41%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-P 60
           M+  LDMSLDDIIK+N+K      RG            G GS  GP RRF NR   RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSAP----KAPETTWQHDMFADPSSGFPVQG-------GRASAIQTGTKLYISNLDYGVS 120
           YS P    +A +  WQ+D+FA  +S     G       G  S+I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKI 180
           NEDIKELFSEVGD+KR+GIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNISTPAVNPTAAVN-PF----------ENSNG-------APRRQQGRGGLPSRQR 236
           EIVGTN+S PA+   A    PF          EN NG          R +GRGG   R R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

[Close]

BLAST of PI0000002 vs. TAIR 10
Match: AT5G02530.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 237.7 bits (605), Expect = 9.9e-63
Identity = 158/288 (54.86%), Postives = 180/288 (62.50%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-P 60
           M+  LDMSLDDIIK+N+K      RG            G GS  GP RRF NR   RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSAP----KAPETTWQHDMFADPSSGFPVQG-------GRASAIQTGTKLYISNLDYGVS 120
           YS P    +A +  WQ+D+FA  +S     G       G  S+I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKI 180
           NEDIKELFSEVGD+KR+GIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNISTPAVNPTAAVN-PF----------ENSNGAPRRQ-----QGRGGLPSRQRGR 236
           EIVGTN+S PA+   A    PF          EN NG          +GRGG   R RG 
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGGFMGRPRGG 240

The following BLAST results are available for this feature:

BLAST of PI0000002 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L773	1.8e-69	62.95	THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1	[more]
Q8L719	4.8e-62	54.83	THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1	[more]
Q6NQ72	4.2e-42	42.66	THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1	[more]
Q3T0I4	1.2e-41	44.53	THO complex subunit 4 OS=Bos taurus OX=9913 GN=ALYREF PE=2 SV=1	[more]
O08583	2.1e-41	43.41	THO complex subunit 4 OS=Mus musculus OX=10090 GN=Alyref PE=1 SV=3	[more]

BLAST of PI0000002 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBU2	3.5e-124	98.31	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G193610 PE=4 SV...	[more]
A0A1S3BK70	2.3e-123	97.89	THO complex subunit 4A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490589 P...	[more]
A0A6J1G721	1.5e-114	92.44	THO complex subunit 4A-like OS=Cucurbita moschata OX=3662 GN=LOC111451345 PE=4 S...	[more]
A0A6J1L1M6	4.3e-114	92.02	THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111499593 PE=4 SV=...	[more]
A0A6J1D4W8	2.3e-112	90.12	THO complex subunit 4A-like OS=Momordica charantia OX=3673 GN=LOC111017043 PE=4 ...	[more]

BLAST of PI0000002 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143092.1	7.2e-124	98.31	THO complex subunit 4A [Cucumis sativus] >KGN47175.1 hypothetical protein Csa_02...	[more]
XP_008448384.1	4.7e-123	97.89	PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_008448386.1...	[more]
XP_038901991.1	5.2e-122	97.05	THO complex subunit 4A-like [Benincasa hispida]	[more]
KAG7035419.1	3.0e-114	92.44	THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022947495.1	3.0e-114	92.44	THO complex subunit 4A-like [Cucurbita moschata]	[more]

BLAST of PI0000002 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59950.1	1.3e-70	62.95	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.5	1.7e-70	62.70	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.3	9.2e-69	62.55	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.1	3.4e-63	54.83	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.2	9.9e-63	54.86	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 86..158 e-value: 9.3E-17 score: 71.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 87..155 e-value: 2.7E-14 score: 52.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 85..162 score: 15.698528
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 161..237 e-value: 1.7E-11 score: 54.2
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 175..232 e-value: 1.8E-9 score: 38.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 74..219 e-value: 5.7E-25 score: 90.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..237
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..77
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..236
None	No IPR available	PANTHER	PTHR19965:SF74	CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED	coord: 1..236
None	No IPR available	CDD	cd12680	RRM_THOC4	coord: 85..159 e-value: 2.26249E-47 score: 149.327
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 20..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0000002.1	PI0000002.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding