Moc11g31530 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc11g31530
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionPhotosystem I P700 chlorophyll a apoprotein A2
Locationchr11: 23016949 .. 23017425 (+)
RNA-Seq ExpressionMoc11g31530
SyntenyMoc11g31530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCACCCACCAAATTTAACGATTTTTATCCCAAAAAATCAGAACTACAACTTGGCTCTGATACCAATTGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCGCATGACTTCGAAAGTCATGATGATATTACTGAAGAACGTCGAAGGGATGTGAATCCCGGAGCGGAAGCGGATTTTCGTTGCTGTTTTTCGGGATACAAAATCGGATTTCAAAAAAGGAAAATACAGAGGAAATTCAATACCTTTGAAGAACGTTTCTTCAACAAAATTCCGACGAACACCACCACCGAGCCTTCCTCGCTATCCTCTGGGTACGAGATCGTTTTCGTGGGAGAAATTCTTTGGAACGAGAGGGAAAGTTTGATAGAGAGATTGCACGAGAGAGAAGCTTGGGAGTTCTGTAACATCTCTGTTTTCTGTAACCTTTCCTGGGTTTTGCAGAAAAAACAGTGA

mRNA sequence

ATGAAATCACCCACCAAATTTAACGATTTTTATCCCAAAAAATCAGAACTACAACTTGGCTCTGATACCAATTGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCGCATGACTTCGAAAGTCATGATGATATTACTGAAGAACGTCGAAGGGATGTGAATCCCGGAGCGGAAGCGGATTTTCGTTGCTGTTTTTCGGGATACAAAATCGGATTTCAAAAAAGGAAAATACAGAGGAAATTCAATACCTTTGAAGAACGTTTCTTCAACAAAATTCCGACGAACACCACCACCGAGCCTTCCTCGCTATCCTCTGGGTACGAGATCGTTTTCGTGGGAGAAATTCTTTGGAACGAGAGGGAAAGTTTGATAGAGAGATTGCACGAGAGAGAAGCTTGGGAGTTCTGTAACATCTCTGTTTTCTGTAACCTTTCCTGGGTTTTGCAGAAAAAACAGTGA

Coding sequence (CDS)

ATGAAATCACCCACCAAATTTAACGATTTTTATCCCAAAAAATCAGAACTACAACTTGGCTCTGATACCAATTGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCGCATGACTTCGAAAGTCATGATGATATTACTGAAGAACGTCGAAGGGATGTGAATCCCGGAGCGGAAGCGGATTTTCGTTGCTGTTTTTCGGGATACAAAATCGGATTTCAAAAAAGGAAAATACAGAGGAAATTCAATACCTTTGAAGAACGTTTCTTCAACAAAATTCCGACGAACACCACCACCGAGCCTTCCTCGCTATCCTCTGGGTACGAGATCGTTTTCGTGGGAGAAATTCTTTGGAACGAGAGGGAAAGTTTGATAGAGAGATTGCACGAGAGAGAAGCTTGGGAGTTCTGTAACATCTCTGTTTTCTGTAACCTTTCCTGGGTTTTGCAGAAAAAACAGTGA

Protein sequence

MKSPTKFNDFYPKKSELQLGSDTNCLAQDPTTRRIWFGIATAHDFESHDDITEERRRDVNPGAEADFRCCFSGYKIGFQKRKIQRKFNTFEERFFNKIPTNTTTEPSSLSSGYEIVFVGEILWNERESLIERLHEREAWEFCNISVFCNLSWVLQKKQ
Homology
[Close]
BLAST of Moc11g31530 vs. NCBI nr
Match: YP_007026724.1 (photosystem I P700 apoprotein A2 [Lolium multiflorum] >AFV62904.1 photosystem I P700 apoprotein A2 [Lolium multiflorum])

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-08
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 16 ELQLGSDTNCLAQDPTTRRIWFGIATAHDFESHDDITEER 56
          EL+    +  LAQDPTTRRIWFGIATAHDFESHDDITEER
Sbjct: 2  ELRFARFSQGLAQDPTTRRIWFGIATAHDFESHDDITEER 41

[Close]
BLAST of Moc11g31530 vs. NCBI nr
Match: QTD87095.1 (photosystem I P700 apoprotein A2 [Themeda tremula])

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-08
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 16 ELQLGSDTNCLAQDPTTRRIWFGIATAHDFESHDDITEER 56
          EL+    +  LAQDPTTRRIWFGIATAHDFESHDDITEER
Sbjct: 2  ELRFPRFSQSLAQDPTTRRIWFGIATAHDFESHDDITEER 41

[Close]
BLAST of Moc11g31530 vs. NCBI nr
Match: YP_007026552.1 (photosystem I P700 apoprotein A2 [Festuca ovina] >QFU80202.1 photosystem I P700 apoprotein A2 [Festuca brevipila] >QTJ28575.1 photosystem I P700 apoprotein A2 [Colpodium humile] >AFV62732.1 photosystem I P700 apoprotein A2 [Festuca ovina] >QCD14860.1 photosystem I P700 apoprotein A2 [Festuca ovina] >QFU80365.1 photosystem I P700 apoprotein A2 [Festuca ovina])

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-08
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 16 ELQLGSDTNCLAQDPTTRRIWFGIATAHDFESHDDITEER 56
          EL+    +  LAQDPTTRRIWFGIATAHDFESHDDITEER
Sbjct: 2  ELRFPKFSQGLAQDPTTRRIWFGIATAHDFESHDDITEER 41

[Close]
BLAST of Moc11g31530 vs. NCBI nr
Match: AFA27178.1 (photosystem I P700 apoprotein A2, partial [Flagellaria indica])

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-08
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 16 ELQLGSDTNCLAQDPTTRRIWFGIATAHDFESHDDITEER 56
          EL+    +  LAQDPTTRRIWFGIATAHDFESHDDITEER
Sbjct: 2  ELRFPGFSQGLAQDPTTRRIWFGIATAHDFESHDDITEER 41

[Close]
BLAST of Moc11g31530 vs. NCBI nr
Match: ASD35381.1 (photosystem I P700 apoprotein A2 [Aegilops comosa])

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-08
Identity = 32/40 (80.00%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 16 ELQLGSDTNCLAQDPTTRRIWFGIATAHDFESHDDITEER 56
          EL+       LAQDPTTRRIWFGIATAHDFESHDDITEER
Sbjct: 2  ELRFXXXXQGLAQDPTTRRIWFGIATAHDFESHDDITEER 41

[Close]
BLAST of Moc11g31530 vs. ExPASy Swiss-Prot
Match: A1EA07 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Agrostis stolonifera OX=63632 GN=psaB PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.4e-11
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 16 ELQLGSDTNCLAQDPTTRRIWFGIATAHDFESHDDITEER 56
          EL+    +  LAQDPTTRRIWFGIATAHDFESHDDITEER
Sbjct: 2  ELRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEER 41

[Close]
BLAST of Moc11g31530 vs. ExPASy Swiss-Prot
Match: A1E9J0 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Hordeum vulgare OX=4513 GN=psaB PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.4e-11
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 16 ELQLGSDTNCLAQDPTTRRIWFGIATAHDFESHDDITEER 56
          EL+    +  LAQDPTTRRIWFGIATAHDFESHDDITEER
Sbjct: 2  ELRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEER 41

[Close]
BLAST of Moc11g31530 vs. ExPASy Swiss-Prot
Match: P04967 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Zea mays OX=4577 GN=psaB PE=3 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 4.4e-11
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 16 ELQLGSDTNCLAQDPTTRRIWFGIATAHDFESHDDITEER 56
          EL+    +  LAQDPTTRRIWFGIATAHDFESHDDITEER
Sbjct: 2  ELRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEER 41

[Close]
BLAST of Moc11g31530 vs. ExPASy Swiss-Prot
Match: Q6ENH5 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Oryza nivara OX=4536 GN=psaB PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.4e-11
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 16 ELQLGSDTNCLAQDPTTRRIWFGIATAHDFESHDDITEER 56
          EL+    +  LAQDPTTRRIWFGIATAHDFESHDDITEER
Sbjct: 2  ELRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEER 41

[Close]
BLAST of Moc11g31530 vs. ExPASy Swiss-Prot
Match: P0C356 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Oryza sativa OX=4530 GN=psaB PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.4e-11
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 16 ELQLGSDTNCLAQDPTTRRIWFGIATAHDFESHDDITEER 56
          EL+    +  LAQDPTTRRIWFGIATAHDFESHDDITEER
Sbjct: 2  ELRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEER 41

[Close]
BLAST of Moc11g31530 vs. ExPASy TrEMBL
Match: K4PMW0 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Lolium multiflorum OX=4521 GN=psaB PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.5e-09
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 16 ELQLGSDTNCLAQDPTTRRIWFGIATAHDFESHDDITEER 56
          EL+    +  LAQDPTTRRIWFGIATAHDFESHDDITEER
Sbjct: 2  ELRFARFSQGLAQDPTTRRIWFGIATAHDFESHDDITEER 41

[Close]
BLAST of Moc11g31530 vs. ExPASy TrEMBL
Match: K4PCB3 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Festuca ovina OX=98750 GN=psaB PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 16 ELQLGSDTNCLAQDPTTRRIWFGIATAHDFESHDDITEER 56
          EL+    +  LAQDPTTRRIWFGIATAHDFESHDDITEER
Sbjct: 2  ELRFPKFSQGLAQDPTTRRIWFGIATAHDFESHDDITEER 41

[Close]
BLAST of Moc11g31530 vs. ExPASy TrEMBL
Match: A0A4D6J738 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Catapodium marinum OX=1053335 GN=psaB PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 16 ELQLGSDTNCLAQDPTTRRIWFGIATAHDFESHDDITEER 56
          EL+    +  LAQDPTTRRIWFGIATAHDFESHDDITEER
Sbjct: 2  ELRFPKFSQGLAQDPTTRRIWFGIATAHDFESHDDITEER 41

[Close]
BLAST of Moc11g31530 vs. ExPASy TrEMBL
Match: H6SZE9 (Photosystem I (Fragment) OS=Flagellaria indica OX=13529 GN=psaB PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 16 ELQLGSDTNCLAQDPTTRRIWFGIATAHDFESHDDITEER 56
          EL+    +  LAQDPTTRRIWFGIATAHDFESHDDITEER
Sbjct: 2  ELRFPGFSQGLAQDPTTRRIWFGIATAHDFESHDDITEER 41

[Close]
BLAST of Moc11g31530 vs. ExPASy TrEMBL
Match: A0A5P9NW64 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Festuca brevipila OX=98746 GN=psaB PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 16 ELQLGSDTNCLAQDPTTRRIWFGIATAHDFESHDDITEER 56
          EL+    +  LAQDPTTRRIWFGIATAHDFESHDDITEER
Sbjct: 2  ELRFPKFSQGLAQDPTTRRIWFGIATAHDFESHDDITEER 41

[Close]
BLAST of Moc11g31530 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 67.8 bits (164), Expect = 9.0e-12
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 26 LAQDPTTRRIWFGIATAHDFESHDDITEER 56
          LAQDPTTRRIWFGIATAHDFESHDDITEER
Sbjct: 12 LAQDPTTRRIWFGIATAHDFESHDDITEER 41

The following BLAST results are available for this feature:
BLAST of Moc11g31530 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_007026724.12.0e-0880.00photosystem I P700 apoprotein A2 [Lolium multiflorum] >AFV62904.1 photosystem I ... [more]
QTD87095.12.0e-0880.00photosystem I P700 apoprotein A2 [Themeda tremula][more]
YP_007026552.12.5e-0880.00photosystem I P700 apoprotein A2 [Festuca ovina] >QFU80202.1 photosystem I P700 ... [more]
AFA27178.12.5e-0880.00photosystem I P700 apoprotein A2, partial [Flagellaria indica][more]
ASD35381.12.5e-0880.00photosystem I P700 apoprotein A2 [Aegilops comosa][more]
BLAST of Moc11g31530 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A1EA074.4e-1180.00Photosystem I P700 chlorophyll a apoprotein A2 OS=Agrostis stolonifera OX=63632 ... [more]
A1E9J04.4e-1180.00Photosystem I P700 chlorophyll a apoprotein A2 OS=Hordeum vulgare OX=4513 GN=psa... [more]
P049674.4e-1180.00Photosystem I P700 chlorophyll a apoprotein A2 OS=Zea mays OX=4577 GN=psaB PE=3 ... [more]
Q6ENH54.4e-1180.00Photosystem I P700 chlorophyll a apoprotein A2 OS=Oryza nivara OX=4536 GN=psaB P... [more]
P0C3564.4e-1180.00Photosystem I P700 chlorophyll a apoprotein A2 OS=Oryza sativa OX=4530 GN=psaB P... [more]
BLAST of Moc11g31530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
K4PMW09.5e-0980.00Photosystem I P700 chlorophyll a apoprotein A2 OS=Lolium multiflorum OX=4521 GN=... [more]
K4PCB31.2e-0880.00Photosystem I P700 chlorophyll a apoprotein A2 OS=Festuca ovina OX=98750 GN=psaB... [more]
A0A4D6J7381.2e-0880.00Photosystem I P700 chlorophyll a apoprotein A2 OS=Catapodium marinum OX=1053335 ... [more]
H6SZE91.2e-0880.00Photosystem I (Fragment) OS=Flagellaria indica OX=13529 GN=psaB PE=3 SV=1[more]
A0A5P9NW641.2e-0880.00Photosystem I P700 chlorophyll a apoprotein A2 OS=Festuca brevipila OX=98746 GN=... [more]
BLAST of Moc11g31530 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00340.19.0e-12100.00Photosystem I, PsaA/PsaB protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036408Photosystem I PsaA/PsaB superfamilyGENE3D1.20.1130.10Photosystem I PsaA/PsaBcoord: 16..60
e-value: 1.9E-8
score: 34.8
IPR036408Photosystem I PsaA/PsaB superfamilySUPERFAMILY81558Photosystem I subunits PsaA/PsaBcoord: 18..55
IPR001280Photosystem I PsaA/PsaBPFAMPF00223PsaA_PsaBcoord: 25..58
e-value: 8.5E-8
score: 30.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc11g31530.1Moc11g31530.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
biological_process GO:0015979 photosynthesis
biological_process GO:0018298 protein-chromophore linkage
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0009579 thylakoid
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0000287 magnesium ion binding