Moc11g31230 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc11g31230
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Locationchr11: 22828292 .. 22829167 (+)
RNA-Seq ExpressionMoc11g31230
SyntenyMoc11g31230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAGCAAGCTGGAACGAAAATCAAAGAACTCCTAATTAGGGTAGAGGAGGAAGAAGACCATCCGGTCGATTTGGATCTACTAATACAAAGGGAGAATTTAAACAAGATAATCGGAATTGGGAAGAAAAGAATGAACCCTTCGAAGGAGGAGATGAGAAACCAAAAGCACCATCTAAGTGGACAGCCCACAATCGGCAAGAACTCAATCTCAAAGCAAGAAAATCCATATGCAAGACCTTCAAATTTAAAGAAATGTTATAGATGTGGTCAAACTGGCCATTTCTCCAATGAATGCTCCGAAAGAAAGAAGCTTGCATTGATGGAAGAAGGCTCCGAACAAGAAGACAGCGGTGAAAAAGAGGAGAAATTTTCTAGAAATGAACAGGAAATCTTTGAAGAAGGAGATGATGGTGAGTGGGTAATTTGTGTCCTCCAAAGACTTTTGTTAAATTCAAGAATGGAAGTGAATACTATTCAATGACATGCCCTATTTAAGACTAGATGTACTGTGAATAATAAGGTGTGTGATGTGATAATTGATAGTGGGAGTTGCGAAAATGTTGTGTCCAATGCTTTAGTTGAAGCTCTTAGATTGGAAATCGAACCTCATCCTAATCCTTATAAAATAGGATGGATCAAGAAAAGAAATGAAGTGGCTATCACAAAAATTTGCACAATTCCACTGTCCATTGGAAAACATTACAAAGATCAAATTATTTGCGAAGTTATAGACATGGATGCATGCCACATCTTGCTCAGAGACCTTGACAATTTGATCTTTCGACAATTCACAAAGGAAGGGAGAACACTTACGAATTTAATTGTCTTGGTAAGAAAATCACCCTACTACCCAATAAGCAAAAAGAGGTAA

mRNA sequence

ATGGACAAGCAAGCTGGAACGAAAATCAAAGAACTCCTAATTAGGGTAGAGGAGGAAGAAGACCATCCGGTCGATTTGGATCTACTAATACAAAGGGAGAATTTAAACAAGATAATCGGAATTGGGAAGAAAAGAATGAACCCTTCGAAGGAGGAGATGAGAAACCAAAAGCACCATCTAAGTGGACAGCCCACAATCGGCAAGAACTCAATCTCAAAGCAAGAAAATCCATATGCAAGACCTTCAAATTTAAAGAAATGTTATAGATGTGGTCAAACTGGCCATTTCTCCAATGAATGCTCCGAAAGAAAGAAGCTTGCATTGATGGAAGAAGGCTCCGAACAAGAAGACAGCGGTGAAAAAGAGGAGAAATTTTCTAGAAATGAACAGGAAATCTTTGAAGAAGGAGATGATGGTGAGTGGGTGTGTGATGTGATAATTGATAGTGGGAGTTGCGAAAATGTTGTGTCCAATGCTTTAGTTGAAGCTCTTAGATTGGAAATCGAACCTCATCCTAATCCTTATAAAATAGGATGGATCAAGAAAAGAAATGAAGTGGCTATCACAAAAATTTGCACAATTCCACTGTCCATTGGAAAACATTACAAAGATCAAATTATTTGCGAAGTTATAGACATGGATGCATGCCACATCTTGCTCAGAGACCTTGACAATTTGATCTTTCGACAATTCACAAAGGAAGGGAGAACACTTACGAATTTAATTGTCTTGGTAAGAAAATCACCCTACTACCCAATAAGCAAAAAGAGGTAA

Coding sequence (CDS)

ATGGACAAGCAAGCTGGAACGAAAATCAAAGAACTCCTAATTAGGGTAGAGGAGGAAGAAGACCATCCGGTCGATTTGGATCTACTAATACAAAGGGAGAATTTAAACAAGATAATCGGAATTGGGAAGAAAAGAATGAACCCTTCGAAGGAGGAGATGAGAAACCAAAAGCACCATCTAAGTGGACAGCCCACAATCGGCAAGAACTCAATCTCAAAGCAAGAAAATCCATATGCAAGACCTTCAAATTTAAAGAAATGTTATAGATGTGGTCAAACTGGCCATTTCTCCAATGAATGCTCCGAAAGAAAGAAGCTTGCATTGATGGAAGAAGGCTCCGAACAAGAAGACAGCGGTGAAAAAGAGGAGAAATTTTCTAGAAATGAACAGGAAATCTTTGAAGAAGGAGATGATGGTGAGTGGGTGTGTGATGTGATAATTGATAGTGGGAGTTGCGAAAATGTTGTGTCCAATGCTTTAGTTGAAGCTCTTAGATTGGAAATCGAACCTCATCCTAATCCTTATAAAATAGGATGGATCAAGAAAAGAAATGAAGTGGCTATCACAAAAATTTGCACAATTCCACTGTCCATTGGAAAACATTACAAAGATCAAATTATTTGCGAAGTTATAGACATGGATGCATGCCACATCTTGCTCAGAGACCTTGACAATTTGATCTTTCGACAATTCACAAAGGAAGGGAGAACACTTACGAATTTAATTGTCTTGGTAAGAAAATCACCCTACTACCCAATAAGCAAAAAGAGGTAA

Protein sequence

MDKQAGTKIKELLIRVEEEEDHPVDLDLLIQRENLNKIIGIGKKRMNPSKEEMRNQKHHLSGQPTIGKNSISKQENPYARPSNLKKCYRCGQTGHFSNECSERKKLALMEEGSEQEDSGEKEEKFSRNEQEIFEEGDDGEWVCDVIIDSGSCENVVSNALVEALRLEIEPHPNPYKIGWIKKRNEVAITKICTIPLSIGKHYKDQIICEVIDMDACHILLRDLDNLIFRQFTKEGRTLTNLIVLVRKSPYYPISKKR
Homology
BLAST of Moc11g31230 vs. NCBI nr
Match: TYK16316.1 (zf-CCHC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 153.7 bits (387), Expect = 2.2e-33
Identity = 88/211 (41.71%), Postives = 115/211 (54.50%), Query Frame = 0

Query: 73  KQENPYARPSNLKKCYRCGQTGHFSNECSERKKLALMEEGSEQEDSGEKEEKFSRNEQEI 132
           K +N Y RPS L KC+RCG+  H SN C +RK +AL E+        ++EE+    E E+
Sbjct: 173 KTQNNYTRPS-LGKCFRCGEPDHLSNNCPQRKTIALAEDEDTYTSETDREEE---EETEL 232

Query: 133 FEEGDDGE--------------------------------WVCDVIIDSGSCENVVSNAL 192
            E  D+                                   VCDVII+SGS EN V+  L
Sbjct: 233 IEADDEDRISCIIQRVLITPKEETNPQRHNLFKTRCTINGKVCDVIINSGSSENFVARKL 292

Query: 193 VEALRLEIEPHPNPYKIGWIKKRNEVAITKICTIPLSIGKHYKDQIICEVIDMDACHILL 252
           V AL L+ +PHP+PYKIGW+KK  E  I +ICTIPLSIG  YKDQI+C+VI+MD CH+LL
Sbjct: 293 VTALNLKTDPHPDPYKIGWVKKGGETLINEICTIPLSIGNSYKDQIVCDVIEMDVCHLLL 352

BLAST of Moc11g31230 vs. NCBI nr
Match: KAA0063032.1 (zf-CCHC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 2.9e-33
Identity = 88/211 (41.71%), Postives = 115/211 (54.50%), Query Frame = 0

Query: 73  KQENPYARPSNLKKCYRCGQTGHFSNECSERKKLALMEEGSEQEDSGEKEEKFSRNEQEI 132
           K +N Y RPS L KC+RCG+  H SN C +RK +AL E+        ++EE+    E E+
Sbjct: 173 KTQNNYTRPS-LGKCFRCGEPDHLSNNCPQRKTIALAEDEDTYTSETDREEE---EETEL 232

Query: 133 FEEGDDGE--------------------------------WVCDVIIDSGSCENVVSNAL 192
            E  D+                                   VCDVII+SGS EN V+  L
Sbjct: 233 IEANDEDRISCIIQRVLITPKEETNPQRHSLFKTRCTINGKVCDVIINSGSSENFVARKL 292

Query: 193 VEALRLEIEPHPNPYKIGWIKKRNEVAITKICTIPLSIGKHYKDQIICEVIDMDACHILL 252
           V AL L+ +PHP+PYKIGW+KK  E  I +ICTIPLSIG  YKDQI+C+VI+MD CH+LL
Sbjct: 293 VTALNLKTDPHPDPYKIGWVKKGGETLINEICTIPLSIGNSYKDQIVCDVIEMDVCHLLL 352

BLAST of Moc11g31230 vs. NCBI nr
Match: XP_031741035.1 (uncharacterized protein LOC116403692 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 8.3e-33
Identity = 98/243 (40.33%), Postives = 128/243 (52.67%), Query Frame = 0

Query: 33  ENLNKIIGIGKKRMN-PSKEEMRNQKHHLSGQPTIGKNSISKQ----------------- 92
           E + ++I I  K +N  S  E  + K   + QP+    +  K+                 
Sbjct: 332 ETVEEMIAIRSKNLNRRSAWETNSTKSKTNDQPSTSTKAKGKEIDNQEVAVERKKEQTFK 391

Query: 93  ---ENPYARPSNLKKCYRCGQTGHFSNECSERKKLALMEEGSE-QEDSGEKEEKFSRNEQ 152
              +N Y+RPS L KC+RCGQTGH S+ C +RK +A+ EEG +  EDS E EE     E 
Sbjct: 392 PSGQNSYSRPS-LGKCFRCGQTGHLSDNCPQRKTIAIAEEGGQISEDSIEAEE-----ET 451

Query: 153 EIFEEGDDGE---------------------------------WVCDVIIDSGSCENVVS 212
           E+  E DDGE                                  VCDVIIDSGS EN V+
Sbjct: 452 ELI-EADDGERVSCVIQRLLITPKEEKNLQRHCLFKTRCTINGRVCDVIIDSGSSENFVA 511

Query: 213 NALVEALRLEIEPHPNPYKIGWIKKRNEVAITKICTIPLSIGKHYKDQIICEVIDMDACH 221
             LV  L L+ E HPNPYKIGW++K  E  +++ICT+PLSIG  YKDQI+C+VI+MD CH
Sbjct: 512 KKLVTVLNLKAEAHPNPYKIGWVRKGGEATVSEICTVPLSIGNAYKDQIVCDVIEMDVCH 567

BLAST of Moc11g31230 vs. NCBI nr
Match: XP_031744062.1 (uncharacterized protein LOC116404773 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 4.1e-32
Identity = 102/260 (39.23%), Postives = 131/260 (50.38%), Query Frame = 0

Query: 16  VEEEEDHPVDLDLLIQRENLNKIIGIGKKRMN-PSKEEMRNQKHHLSGQPTIGKNSISKQ 75
           + E E H V        E + ++I I  K +N  S  E  + K   + QP+       K+
Sbjct: 150 LSENEQHQV---ARFVGETVEEMIAIRSKNLNRRSAWETTSTKSKTNDQPSTSTKGKGKE 209

Query: 76  --------------------ENPYARPSNLKKCYRCGQTGHFSNECSERKKLALMEEGSE 135
                               +N Y+RPS L KC+RCGQTGH SN C +RK +A+ EEG +
Sbjct: 210 VDNQEVAVERKKEQTFKPSGQNSYSRPS-LGKCFRCGQTGHLSNNCPQRKTIAIAEEGGQ 269

Query: 136 -QEDSGEKEEKFSRNEQEIFEEGDDGE--------------------------------- 195
             EDS E EE     E E+  E DDGE                                 
Sbjct: 270 TSEDSIEAEE-----ETELI-EADDGERVSCFIQRVLIMPKEEKNLQRHCLFKTRCTING 329

Query: 196 WVCDVIIDSGSCENVVSNALVEALRLEIEPHPNPYKIGWIKKRNEVAITKICTIPLSIGK 221
            VCDVIIDSGS EN V+  LV  L L+ E HP PYKIGW++K  E  +++ICT+PLSIG 
Sbjct: 330 RVCDVIIDSGSSENFVAKKLVIVLNLKAEAHPTPYKIGWVRKGGEATVSEICTVPLSIGN 389

BLAST of Moc11g31230 vs. NCBI nr
Match: XP_038976596.1 (uncharacterized protein LOC113461736 [Phoenix dactylifera])

HSP 1 Score: 149.1 bits (375), Expect = 5.4e-32
Identity = 74/155 (47.74%), Postives = 107/155 (69.03%), Query Frame = 0

Query: 73  KQENPYARPSNLKKCYRCGQTGHFSNECSERKKLALMEEGSEQEDSGEKEEKFSRNEQEI 132
           K  NPYAR +++ KCYRCG+ GH SNEC  RK + L+    E E+  E+EE+    +  +
Sbjct: 378 KNSNPYARATSV-KCYRCGKPGHRSNECPARKPVNLI----EPEEESEEEEEQLVYDNGV 437

Query: 133 FEEGD-------DGEWVCDVIIDSGSCENVVSNALVEALRLEIEPHPNPYKIGWIKKRNE 192
           +E  D         + +C++IID+GSC+N V+  LV+ LRL  E HP+PY IGW+KK  +
Sbjct: 438 YERHDIFQSLCTINKKICNLIIDNGSCDNFVAKRLVDHLRLATEAHPSPYFIGWVKKGPK 497

Query: 193 VAITKICTIPLSIGKHYKDQIICEVIDMDACHILL 221
           V +T++C +P+SIGKHYKD+++C+VIDMDA H+LL
Sbjct: 498 VKVTEVCKVPISIGKHYKDEVVCDVIDMDASHVLL 527

BLAST of Moc11g31230 vs. ExPASy TrEMBL
Match: A0A5D3D0X3 (Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00930 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.1e-33
Identity = 88/211 (41.71%), Postives = 115/211 (54.50%), Query Frame = 0

Query: 73  KQENPYARPSNLKKCYRCGQTGHFSNECSERKKLALMEEGSEQEDSGEKEEKFSRNEQEI 132
           K +N Y RPS L KC+RCG+  H SN C +RK +AL E+        ++EE+    E E+
Sbjct: 173 KTQNNYTRPS-LGKCFRCGEPDHLSNNCPQRKTIALAEDEDTYTSETDREEE---EETEL 232

Query: 133 FEEGDDGE--------------------------------WVCDVIIDSGSCENVVSNAL 192
            E  D+                                   VCDVII+SGS EN V+  L
Sbjct: 233 IEADDEDRISCIIQRVLITPKEETNPQRHNLFKTRCTINGKVCDVIINSGSSENFVARKL 292

Query: 193 VEALRLEIEPHPNPYKIGWIKKRNEVAITKICTIPLSIGKHYKDQIICEVIDMDACHILL 252
           V AL L+ +PHP+PYKIGW+KK  E  I +ICTIPLSIG  YKDQI+C+VI+MD CH+LL
Sbjct: 293 VTALNLKTDPHPDPYKIGWVKKGGETLINEICTIPLSIGNSYKDQIVCDVIEMDVCHLLL 352

BLAST of Moc11g31230 vs. ExPASy TrEMBL
Match: A0A5A7V462 (Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001440 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.4e-33
Identity = 88/211 (41.71%), Postives = 115/211 (54.50%), Query Frame = 0

Query: 73  KQENPYARPSNLKKCYRCGQTGHFSNECSERKKLALMEEGSEQEDSGEKEEKFSRNEQEI 132
           K +N Y RPS L KC+RCG+  H SN C +RK +AL E+        ++EE+    E E+
Sbjct: 173 KTQNNYTRPS-LGKCFRCGEPDHLSNNCPQRKTIALAEDEDTYTSETDREEE---EETEL 232

Query: 133 FEEGDDGE--------------------------------WVCDVIIDSGSCENVVSNAL 192
            E  D+                                   VCDVII+SGS EN V+  L
Sbjct: 233 IEANDEDRISCIIQRVLITPKEETNPQRHSLFKTRCTINGKVCDVIINSGSSENFVARKL 292

Query: 193 VEALRLEIEPHPNPYKIGWIKKRNEVAITKICTIPLSIGKHYKDQIICEVIDMDACHILL 252
           V AL L+ +PHP+PYKIGW+KK  E  I +ICTIPLSIG  YKDQI+C+VI+MD CH+LL
Sbjct: 293 VTALNLKTDPHPDPYKIGWVKKGGETLINEICTIPLSIGNSYKDQIVCDVIEMDVCHLLL 352

BLAST of Moc11g31230 vs. ExPASy TrEMBL
Match: A0A5D3CJ99 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00470 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 4.4e-32
Identity = 78/148 (52.70%), Postives = 97/148 (65.54%), Query Frame = 0

Query: 73  KQENPYARPSNLKKCYRCGQTGHFSNECSERKKLALMEEGSEQEDSGEKEEKFSRNEQEI 132
           K +N Y RPS L KC+RC QT + SN C +RK +AL E   E+ DS   + K    E + 
Sbjct: 358 KVQNNYNRPS-LGKCFRCDQTSYLSNTCPQRKTIALAE---EEYDSARDDSKTVEEETKC 417

Query: 133 FEEGDDGEWVCDVIIDSGSCENVVSNALVEALRLEIEPHPNPYKIGWIKKRNEVAITKIC 192
              G     VCDVIIDSGS EN ++  LV  L L+ E HPNP+KIGW+ K  E  +++IC
Sbjct: 418 TINGK----VCDVIIDSGSSENFIAKTLVTTLNLKAETHPNPFKIGWVNKGGETLVSEIC 477

Query: 193 TIPLSIGKHYKDQIICEVIDMDACHILL 221
           T+PLSIG  YKDQIIC+VIDMD CH+LL
Sbjct: 478 TVPLSIGSGYKDQIICDVIDMDVCHLLL 497

BLAST of Moc11g31230 vs. ExPASy TrEMBL
Match: A0A2P5EC93 (Zinc finger, CCHC-type OS=Trema orientale OX=63057 GN=TorRG33x02_211300 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.8e-32
Identity = 85/180 (47.22%), Postives = 106/180 (58.89%), Query Frame = 0

Query: 76  NPYARPSNLKKCYRCGQTGHFSNECSERKKLALMEEGSEQEDSGEKEEKFSRN--EQEIF 135
           +PYARP NL KC+RC Q GH SN C  R+ + L++     ED GE E+    +  E   F
Sbjct: 114 DPYARP-NLGKCFRCNQPGHLSNNCPNRRSIKLVD-----EDGGEDEQVLEEDIYEGAEF 173

Query: 136 EEGDDGE---------------------------------WVCDVIIDSGSCENVVSNAL 195
            EGD+GE                                  VC+VIIDSGS ENVVS AL
Sbjct: 174 AEGDEGEEVACIIQRLLFTPKKLDDSQRHKIFQTRSTIRNKVCNVIIDSGSSENVVSKAL 233

Query: 196 VEALRLEIEPHPNPYKIGWIKKRNEVAITKICTIPLSIGKHYKDQIICEVIDMDACHILL 221
           V+ L L+ E HP+PYKI WIKK  EV + ++C IPLSIGK+YK +I+C+V+DMDACHILL
Sbjct: 234 VKTLNLKNEKHPSPYKIAWIKKGPEVQVLEVCKIPLSIGKYYKYEIVCDVMDMDACHILL 287

BLAST of Moc11g31230 vs. ExPASy TrEMBL
Match: A0A5D3DJB8 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00510 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 9.9e-32
Identity = 82/183 (44.81%), Postives = 107/183 (58.47%), Query Frame = 0

Query: 70  SISKQENPYARPSNLKKCYRCGQTGHFSNECSERKKLALMEEGSEQEDSGEKEEKFSRNE 129
           S  K +N Y RPS LKKC+RCGQ+GH SN C +RK +AL  E S      +KEE    +E
Sbjct: 228 SKGKSQNTYTRPS-LKKCFRCGQSGHLSNNCPQRKTIALAHEESNSISEDDKEE----DE 287

Query: 130 QEIFEEGDDGE-------------------W-------------VCDVIIDSGSCENVVS 189
           +  F E DDG+                   W             VCDVII+S S +N V+
Sbjct: 288 EAKFIEADDGDRISCVIQRVLIAKEETNPKWHNIFKMRCTINGRVCDVIINSESSQNFVA 347

Query: 190 NALVEALRLEIEPHPNPYKIGWIKKRNEVAITKICTIPLSIGKHYKDQIICEVIDMDACH 221
             LV  L L+ +PHPNPYKIGW++K  E +I +ICT+PLSIG  YKDQI+ ++I++D CH
Sbjct: 348 RKLVTILNLKTDPHPNPYKIGWVRKGGEASINEICTVPLSIGSGYKDQIVRDIIEIDVCH 405

BLAST of Moc11g31230 vs. TAIR 10
Match: AT4G13320.1 (unknown protein; Has 68 Blast hits to 67 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 1.7e-04
Identity = 21/73 (28.77%), Postives = 45/73 (61.64%), Query Frame = 0

Query: 143 CDVIIDSGSCENVVSNALVEALRLE-IEPHPNPYKIGWIKKRNEVAITKICTIPLSIGKH 202
           C +++  G+  N++S  LV+ L+L+ ++ +P+   +    +R +    + C +P+SIG  
Sbjct: 110 CRLVLYGGN--NIISKGLVKQLKLKTLKKYPSVRVMA--TRREDKVAEETCRVPVSIGDF 169

Query: 203 YKDQIICEVIDMD 215
           YKD++ C V++M+
Sbjct: 170 YKDKVTCYVVNME 178

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK16316.12.2e-3341.71zf-CCHC domain-containing protein [Cucumis melo var. makuwa][more]
KAA0063032.12.9e-3341.71zf-CCHC domain-containing protein [Cucumis melo var. makuwa][more]
XP_031741035.18.3e-3340.33uncharacterized protein LOC116403692 [Cucumis sativus][more]
XP_031744062.14.1e-3239.23uncharacterized protein LOC116404773 [Cucumis sativus][more]
XP_038976596.15.4e-3247.74uncharacterized protein LOC113461736 [Phoenix dactylifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D0X31.1e-3341.71Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7V4621.4e-3341.71Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3CJ994.4e-3252.70Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22... [more]
A0A2P5EC935.8e-3247.22Zinc finger, CCHC-type OS=Trema orientale OX=63057 GN=TorRG33x02_211300 PE=4 SV=... [more]
A0A5D3DJB89.9e-3244.81CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
Match NameE-valueIdentityDescription
AT4G13320.11.7e-0428.77unknown protein; Has 68 Blast hits to 67 proteins in 12 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 86..102
e-value: 1.2E-4
score: 31.4
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 85..101
e-value: 5.1E-7
score: 29.5
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 86..102
score: 10.65817
NoneNo IPR availableGENE3D4.10.60.10coord: 79..107
e-value: 4.5E-7
score: 31.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..78
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 142..220
NoneNo IPR availablePANTHERPTHR24559:SF327REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 142..220
NoneNo IPR availableCDDcd00303retropepsin_likecoord: 142..220
e-value: 2.75581E-8
score: 48.4868
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 138..221
e-value: 1.0E-5
score: 27.3
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 81..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc11g31230.1Moc11g31230.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding