Moc11g30880 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g30880
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CCHC-type domain-containing protein
Location	chr11: 22582980 .. 22584658 (-)
RNA-Seq Expression	Moc11g30880
Synteny	Moc11g30880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGTGACAGATGTTATTACATACAAGAAAATACACAAAACCCTGAAAGAACAACCAGCTACTCGGATGACAGATAAGGAATGGACGGAGATGGATGAAAAGGCTGTAGCGATCATTAGGTTGTGTTTGTCAACGAATGTGGCAAGTCTCGTGGCGAGTCAGAAAACAGCGATGGGGTTGATGAAGGCACTGACGGAAAAATATGAAAAACTCTCTTCCAATAGCAAGGTGTATCTCATTATGATATACTTCAACATTCATATGGAGGAAGACTCGTCGGTGAACTCCCACGTCAATGAGGTGACTAAATTGATGAATAAGTTAGAGTCGATGGAGATCACATTTTCAAGAGAGGTGAAGGCTATAAAGTTGTTGTCTTCTTTGCCTAACAATTGGAAAACGATGAAGACGGCGATGTCAAATTTTTTGGGAGACAAGAGTCTAAAATTTTCAGATATTTGTGATGCTGCAATTGCTAAGGAGATTCAAAGGAAAGGAAGTGGGGAGATTCCACATCCACGTCTGGTGGTGAGAACCATTTAGAGTCAGAATTGGAAGCGTAGAGCAAAGGAAAAAGGAAGATGAATTACGGGAAACAATAAAGACATGACCAGAGGAGTGGGAGCGGCGAGATTGAATGTTTTAACTGCAATAAGAAGGGCCACTTCAAAAACACTGCAAGAAGCTTAAAGAGGATCGAGCAAAGGAAATATGGACAGATGTTTTGTCAGATGACATGTTGTTAGCATGCGTTGAAAGTGACACAACATTTGTGGATTAATCATAAGAATGAGTAGTGGATAGTACAACATTCGTGCATATATCTTCAGACAGGAGTTGGTTCACGTCCCTCACTACAAGCAGTCATGGCATGGTGAGGACAGGGAATGATAGACTCTCCAAGGTCAGAGGAATTGGGTAGGTGTGTCTGAAGACTGATAGTGAGACCTGAGTTAGTTTTGTATGGTTTCAAGTATGTACCAGTTTCAAAATGAATTTGATATCAACAGGGAAGATGGATGACAAAGACTACAGAAGTGAGTTTTCAGAAAATATGTGGAAACTCATGACGGGATCCGAAGTAGTGGTTCTTGGCCACAGAAAAGCTACAGTGTATGTGTCGAGGTTTAATGTTACTAGAGGATCAGAGAGATAGGTTATGTACAGGGGAAGTAGAGGAAAGGGAAAGAAGAACAGCCTAGTGAGGTGTTCAGTAGACTGTCAGGATAAGGCCCCAGTTTTCAGATGGTTTGGCGAGCTGATGAAGTCACATAGGTGAAATGGTGCATTGAGAAAGATTACAGTTGGTGCTAAGGTCGAGGGTGAGGTTTCTAGAGTGGCAACAGATTTGGGTGGGAGTGCCAAGCGATCAATGAATAAATCTTCTTTTAGGAGTCGTTTGGTGCGATCGCAAAAGGAAGCATCGGGGCCACTTAGTTCGAGTGGGTGCACATGACTGTGTCTCCTACATCTAAGAGATAAGACCACGTAGGATTGCTCAGTCTCATGGAAATCACAGATGAAATCTTGGTTGGAGCCAAGAAGACGTTAGAAGTTGTCGCTGCAATGAGAGTAGAGCCTTGGTCGGTGCCAAGAAGATAATGTTGATCGGTTATAAGTTGTTGATGCTGTCAGAACTGAGACACGAGAGACACTATCGTTTCAGTGGGAAGTAA

mRNA sequence

ATGAAAGTGACAGATGTTATTACATACAAGAAAATACACAAAACCCTGAAAGAACAACCAGCTACTCGGATGACAGATAAGGAATGGACGGAGATGGATGAAAAGGCTGTAGCGATCATTAGGTTGTGTTTGTCAACGAATGTGGCAAGTCTCGTGGCGAGTCAGAAAACAGCGATGGGGTTGATGAAGGCACTGACGGAAAAATATGAAAAACTCTCTTCCAATAGCAAGGTGTATCTCATTATGATATACTTCAACATTCATATGGAGGAAGACTCGTCGGTGAACTCCCACGTCAATGAGGTGACTAAATTGATGAATAAGTTAGAGTCGATGGAGATCACATTTTCAAGAGAGGTGAAGGCTATAAAGTTGTTGTCTTCTTTGCCTAACAATTGGAAAACGATGAAGACGGCGATGTCAAATTTTTTGGGAGACAAGAGTCTAAAATTTTCAGATATTTGTGATGCTGCAATTGCTAAGGAGATTCAAAGGAAAGGAAGTGGGGAGATTCCACATCCACGTCTGGTGGTTATGTACAGGGGAAGTAGAGGAAAGGGAAAGAAGAACAGCCTAGTGAGGTGTTCAGTAGACTGTCAGGATAAGGCCCCAGTTTTCAGATGGTTTGGCGAGCTGATGAAGTCACATAGCCAAGAAGACGTTAGAAGTTGTCGCTGCAATGAGAGTAGAGCCTTGGTCGGTGCCAAGAAGATAATGTTGATCGGTTATAAGTTGTTGATGCTGTCAGAACTGAGACACGAGAGACACTATCGTTTCAGTGGGAAGTAA

Coding sequence (CDS)

ATGAAAGTGACAGATGTTATTACATACAAGAAAATACACAAAACCCTGAAAGAACAACCAGCTACTCGGATGACAGATAAGGAATGGACGGAGATGGATGAAAAGGCTGTAGCGATCATTAGGTTGTGTTTGTCAACGAATGTGGCAAGTCTCGTGGCGAGTCAGAAAACAGCGATGGGGTTGATGAAGGCACTGACGGAAAAATATGAAAAACTCTCTTCCAATAGCAAGGTGTATCTCATTATGATATACTTCAACATTCATATGGAGGAAGACTCGTCGGTGAACTCCCACGTCAATGAGGTGACTAAATTGATGAATAAGTTAGAGTCGATGGAGATCACATTTTCAAGAGAGGTGAAGGCTATAAAGTTGTTGTCTTCTTTGCCTAACAATTGGAAAACGATGAAGACGGCGATGTCAAATTTTTTGGGAGACAAGAGTCTAAAATTTTCAGATATTTGTGATGCTGCAATTGCTAAGGAGATTCAAAGGAAAGGAAGTGGGGAGATTCCACATCCACGTCTGGTGGTTATGTACAGGGGAAGTAGAGGAAAGGGAAAGAAGAACAGCCTAGTGAGGTGTTCAGTAGACTGTCAGGATAAGGCCCCAGTTTTCAGATGGTTTGGCGAGCTGATGAAGTCACATAGCCAAGAAGACGTTAGAAGTTGTCGCTGCAATGAGAGTAGAGCCTTGGTCGGTGCCAAGAAGATAATGTTGATCGGTTATAAGTTGTTGATGCTGTCAGAACTGAGACACGAGAGACACTATCGTTTCAGTGGGAAGTAA

Protein sequence

MKVTDVITYKKIHKTLKEQPATRMTDKEWTEMDEKAVAIIRLCLSTNVASLVASQKTAMGLMKALTEKYEKLSSNSKVYLIMIYFNIHMEEDSSVNSHVNEVTKLMNKLESMEITFSREVKAIKLLSSLPNNWKTMKTAMSNFLGDKSLKFSDICDAAIAKEIQRKGSGEIPHPRLVVMYRGSRGKGKKNSLVRCSVDCQDKAPVFRWFGELMKSHSQEDVRSCRCNESRALVGAKKIMLIGYKLLMLSELRHERHYRFSGK

Homology

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BLAST of Moc11g30880 vs. NCBI nr
Match: VDD56318.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 146.4 bits (368), Expect = 3.6e-31
Identity = 77/170 (45.29%), Postives = 119/170 (70.00%), Query Frame = 0


Query: 1   MKVTDVITYKKIHKTLKEQPATRMTDKEWTEMDEKAVAIIRLCLSTNVASLVASQKTAMG 60
           M++ D +  KK+H+ L ++P  ++   EW  +D + + +IRL LS NVA  VA +KT  G
Sbjct: 373 MQIEDYLYVKKLHQPLSKKP-EKLDQDEWELLDRQVLGVIRLTLSKNVAHNVAKEKTTEG 432

Query: 61  LMKALTEKYEKLSSNSKVYLIMIYFNIHMEEDSSVNSHVNEVTKLMNKLESMEITFSREV 120
           LMK L++ YEK S+N+KV+L+   F++ MEE   V +HVNE   ++N+L S+EI F  EV
Sbjct: 433 LMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGCLVAAHVNEFNTIVNQLSSVEIEFEDEV 492

Query: 121 KAIKLLSSLPNNWKTMKTAMSNFLGDKSLKFSDICDAAIAKEIQRKGSGE 171
           +A+ LL+SLPN+W+ M+ A+SNF+G + LKF+D+ D  +A+E++R  SGE
Sbjct: 493 RALILLASLPNSWEPMRAAVSNFVGTQKLKFNDVKDRILAEEVRRIDSGE 541

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BLAST of Moc11g30880 vs. NCBI nr
Match: KAG7593230.1 (Pentatricopeptide repeat [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 142.1 bits (357), Expect = 6.7e-30
Identity = 77/190 (40.53%), Postives = 123/190 (64.74%), Query Frame = 0


Query: 1   MKVTDVITYKKIHKTLKEQPATRMTDKEWTEMDEKAVAIIRLCLSTNVASLVASQKTAMG 60
           M++ D +  KK+H+ L  +P  +M  +EW  +D + + +IRL LS NVA  VA +KT  G
Sbjct: 24  MQIEDYLYGKKLHQPLSMKP-EKMAQEEWDLLDRQVLGVIRLTLSKNVAHNVAKEKTTEG 83

Query: 61  LMKALTEKYEKLSSNSKVYLIMIYFNIHMEEDSSVNSHVNEVTKLMNKLESMEITFSREV 120
           LMK L++ YEK S+N+KV+L+   F++ MEE   V +HVNE   ++N+L S+EI F  EV
Sbjct: 84  LMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGPVATHVNEFNTIVNQLSSVEIEFDDEV 143

Query: 121 KAIKLLSSLPNNWKTMKTAMSNFLGDKSLKFSDICDAAIAKEIQRKGSGEIPHPRLVVMY 180
           +A+ LL+SLPN+W+ M+ A+SN +G++ LKF D+ D  + +E++R  +GE        + 
Sbjct: 144 RALILLASLPNSWEPMRAAVSNSVGNQKLKFVDVRDRILGEEVRRIDTGETSTSSAFNVE 203

Query: 181 RGSRGKGKKN 191
              R + ++N
Sbjct: 204 NRGRDQNRRN 212

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BLAST of Moc11g30880 vs. NCBI nr
Match: KAG7584790.1 (Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 142.1 bits (357), Expect = 6.7e-30
Identity = 77/190 (40.53%), Postives = 123/190 (64.74%), Query Frame = 0


Query: 1   MKVTDVITYKKIHKTLKEQPATRMTDKEWTEMDEKAVAIIRLCLSTNVASLVASQKTAMG 60
           M++ D +  KK+H+ L  +P  +M  +EW  +D + + +IRL LS NVA  VA +KT  G
Sbjct: 24  MQIEDYLYGKKLHQPLSMKP-EKMAQEEWDLLDRQVLGVIRLTLSKNVAHNVAKEKTTEG 83

Query: 61  LMKALTEKYEKLSSNSKVYLIMIYFNIHMEEDSSVNSHVNEVTKLMNKLESMEITFSREV 120
           LMK L++ YEK S+N+KV+L+   F++ MEE   V +HVNE   ++N+L S+EI F  EV
Sbjct: 84  LMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGPVATHVNEFNTIVNQLSSVEIEFDDEV 143

Query: 121 KAIKLLSSLPNNWKTMKTAMSNFLGDKSLKFSDICDAAIAKEIQRKGSGEIPHPRLVVMY 180
           +A+ LL+SLPN+W+ M+ A+SN +G++ LKF D+ D  + +E++R  +GE        + 
Sbjct: 144 RALILLASLPNSWEPMRAAVSNSVGNQKLKFVDVRDRILGEEVRRIDTGETSMSSAFNVE 203

Query: 181 RGSRGKGKKN 191
              R + ++N
Sbjct: 204 NRGRDQNRRN 212

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BLAST of Moc11g30880 vs. NCBI nr
Match: KAG7561662.1 (Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 141.4 bits (355), Expect = 1.1e-29
Identity = 76/190 (40.00%), Postives = 123/190 (64.74%), Query Frame = 0


Query: 1   MKVTDVITYKKIHKTLKEQPATRMTDKEWTEMDEKAVAIIRLCLSTNVASLVASQKTAMG 60
           M++ D +  KK+H+ L  +P  +M  +EW  +D + + +IRL LS NVA  VA +KT  G
Sbjct: 24  MQIEDYLYGKKLHQPLSMKP-EKMAQEEWDLLDRQVLGVIRLTLSKNVAHNVAKEKTTEG 83

Query: 61  LMKALTEKYEKLSSNSKVYLIMIYFNIHMEEDSSVNSHVNEVTKLMNKLESMEITFSREV 120
           LMK L++ YEK S+N+KV+L+   F++ MEE   V +HVNE   ++N+L S+EI F  EV
Sbjct: 84  LMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGPVATHVNEFNTIVNQLSSVEIEFDDEV 143

Query: 121 KAIKLLSSLPNNWKTMKTAMSNFLGDKSLKFSDICDAAIAKEIQRKGSGEIPHPRLVVMY 180
           +A+ L++SLPN+W+ M+ A+SN +G++ LKF D+ D  + +E++R  +GE        + 
Sbjct: 144 RALILIASLPNSWEPMRAAVSNSVGNQKLKFVDVRDRILGEEVRRIDTGETSTSSAFNVE 203

Query: 181 RGSRGKGKKN 191
              R + ++N
Sbjct: 204 NRGRDQNRRN 212

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BLAST of Moc11g30880 vs. NCBI nr
Match: BBG97486.1 (hypothetical protein Prudu_006629 [Prunus dulcis])

HSP 1 Score: 136.7 bits (343), Expect = 2.8e-28
Identity = 84/228 (36.84%), Postives = 130/228 (57.02%), Query Frame = 0


Query: 1   MKVTDVITYKKIHKTLKEQPATRMTDKEWTEMDEKAVAIIRLCLSTNVASLVASQKTAMG 60
           M++ D +  KK+++ L E     M D++WT +D +A+ +IRL LS NVA  +A +KT  G
Sbjct: 46  MQIEDYLYQKKLYQPLSENKPESMNDEDWTLLDRQALGVIRLTLSRNVAFNIAKEKTTAG 105

Query: 61  LMKALTEKYEKLSSNSKVYLIMIYFNIHMEEDSSVNSHVNEVTKLMNKLESMEITFSREV 120
           LM AL+  YEK S+++KV+L+   FN+ M E +SV  H+NE+  +  +L S+ I F  EV
Sbjct: 106 LMAALSSMYEKPSASNKVHLMRRLFNLRMTEGASVAQHLNELNTVTTQLSSVGIEFDEEV 165

Query: 121 KAIKLLSSLPNNWKTMKTAMSNFLGDKSLKFSDICDAAIAKEIQRKGSGEIPHPRLVVMY 180
           +A+ LLSSLP +W    TA+S+  G   L F D+ D  +++EI+R+ SGE    +    +
Sbjct: 166 RALILLSSLPESWNATVTAVSSSSGSNKLTFDDVRDLVLSEEIRRRESGESVKRK---KF 225

Query: 181 RGSRGKGKKNSLVRCSVDCQDKAPVFRWFGELMKSHSQEDVRSCRCNE 229
               G+G+ N   R S D + K+           SHS + V    C +
Sbjct: 226 NQRNGRGRSNYRGR-SKDRRSKS------RNPNNSHSSKTVECWNCGK 263

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BLAST of Moc11g30880 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.0e-13
Identity = 62/231 (26.84%), Postives = 114/231 (49.35%), Query Frame = 0


Query: 2   KVTDVITYKKIHKTL---KEQPATRMTDKEWTEMDEKAVAIIRLCLSTNVASLVASQKTA 61
           ++ D++  + +HK L    ++P T M  ++W ++DE+A + IRL LS +V + +  + TA
Sbjct: 23  RMRDLLIQQGLHKVLDVDSKKPDT-MKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTA 82

Query: 62  MGLMKALTEKYEKLSSNSKVYLIMIYFNIHMEEDSSVNSHVNEVTKLMNKLESMEITFSR 121
            G+   L   Y   +  +K+YL    + +HM E ++  SH+N    L+ +L ++ +    
Sbjct: 83  RGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEE 142

Query: 122 EVKAIKLLSSLPNNWKTMKTAMSNFLGDKSLKFSDICDAAIAKEIQRKGSGEIPHPRLVV 181
           E KAI LL+SLP+++  + T + +  G  +++  D+  A +  E  RK   E     L+ 
Sbjct: 143 EDKAILLLNSLPSSYDNLATTILH--GKTTIELKDVTSALLLNEKMRK-KPENQGQALIT 202

Query: 182 MYRGSRGKGKKNSLVRCSVDCQDKAPVFRWFGELMKSHSQEDVRSC-RCNE 229
             RG   +   N+  R     +             K+ S+  VR+C  CN+
Sbjct: 203 EGRGRSYQRSSNNYGRSGARGKS------------KNRSKSRVRNCYNCNQ 237

[Close]

BLAST of Moc11g30880 vs. ExPASy TrEMBL
Match: A0A3P6FTI2 (Abhydrolase_3 domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC8T49547H PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.7e-31
Identity = 77/170 (45.29%), Postives = 119/170 (70.00%), Query Frame = 0


Query: 1   MKVTDVITYKKIHKTLKEQPATRMTDKEWTEMDEKAVAIIRLCLSTNVASLVASQKTAMG 60
           M++ D +  KK+H+ L ++P  ++   EW  +D + + +IRL LS NVA  VA +KT  G
Sbjct: 373 MQIEDYLYVKKLHQPLSKKP-EKLDQDEWELLDRQVLGVIRLTLSKNVAHNVAKEKTTEG 432

Query: 61  LMKALTEKYEKLSSNSKVYLIMIYFNIHMEEDSSVNSHVNEVTKLMNKLESMEITFSREV 120
           LMK L++ YEK S+N+KV+L+   F++ MEE   V +HVNE   ++N+L S+EI F  EV
Sbjct: 433 LMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGCLVAAHVNEFNTIVNQLSSVEIEFEDEV 492

Query: 121 KAIKLLSSLPNNWKTMKTAMSNFLGDKSLKFSDICDAAIAKEIQRKGSGE 171
           +A+ LL+SLPN+W+ M+ A+SNF+G + LKF+D+ D  +A+E++R  SGE
Sbjct: 493 RALILLASLPNSWEPMRAAVSNFVGTQKLKFNDVKDRILAEEVRRIDSGE 541

[Close]

BLAST of Moc11g30880 vs. ExPASy TrEMBL
Match: A0A0D3BM55 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.9e-31
Identity = 78/170 (45.88%), Postives = 119/170 (70.00%), Query Frame = 0


Query: 1   MKVTDVITYKKIHKTLKEQPATRMTDKEWTEMDEKAVAIIRLCLSTNVASLVASQKTAMG 60
           M++ D +  KK+H+TL ++P  +M   EW  +D + + +IRL LS NVA  VA +KT  G
Sbjct: 1   MQMEDYLYGKKLHQTLSKKP-EKMDQDEWELLDRQVLGVIRLTLSKNVAHNVAKEKTTEG 60

Query: 61  LMKALTEKYEKLSSNSKVYLIMIYFNIHMEEDSSVNSHVNEVTKLMNKLESMEITFSREV 120
           LMK L++ YEK S+N+KV+L+   F++ MEE   V +HVNE   ++N+L S+EI F  EV
Sbjct: 61  LMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGLVAAHVNEFNTIVNQLSSVEIEFDDEV 120

Query: 121 KAIKLLSSLPNNWKTMKTAMSNFLGDKSLKFSDICDAAIAKEIQRKGSGE 171
           +A+ LL+SLPN+W+ M+ A+SN +G + LKF+D+ D  +A+E++R  SGE
Sbjct: 121 RALILLASLPNSWEPMRAAVSNSVGTQKLKFNDVRDRILAEEVRRIDSGE 169

[Close]

BLAST of Moc11g30880 vs. ExPASy TrEMBL
Match: A0A0D3AEM1 (CCHC-type domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 5.0e-31
Identity = 76/170 (44.71%), Postives = 118/170 (69.41%), Query Frame = 0


Query: 1   MKVTDVITYKKIHKTLKEQPATRMTDKEWTEMDEKAVAIIRLCLSTNVASLVASQKTAMG 60
           M++ D +  KK+H+ L ++P  +M   EW  +D + + +IRL LS NVA  V  +KT  G
Sbjct: 24  MQIEDYLYGKKLHQPLSKKP-EKMDQDEWELLDRQVLGVIRLTLSKNVAHNVVKEKTTEG 83

Query: 61  LMKALTEKYEKLSSNSKVYLIMIYFNIHMEEDSSVNSHVNEVTKLMNKLESMEITFSREV 120
           LMK L++ YEK S+NSKV+L+   F++ MEE   V +H+NE   ++N+L S+EI F  EV
Sbjct: 84  LMKVLSDMYEKPSANSKVFLMKKLFHLKMEEGGLVTAHINEFNTIVNQLSSVEIEFEDEV 143

Query: 121 KAIKLLSSLPNNWKTMKTAMSNFLGDKSLKFSDICDAAIAKEIQRKGSGE 171
           +A+ LL+SLPN+W++M+ A+SN +G + LKF+D+ D  +A+E++R  SGE
Sbjct: 144 RALILLASLPNSWESMRVAVSNSVGTQKLKFNDVRDRILAEEVRRIDSGE 192

[Close]

BLAST of Moc11g30880 vs. ExPASy TrEMBL
Match: A0A0D3CS45 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.2e-30
Identity = 76/170 (44.71%), Postives = 117/170 (68.82%), Query Frame = 0


Query: 1   MKVTDVITYKKIHKTLKEQPATRMTDKEWTEMDEKAVAIIRLCLSTNVASLVASQKTAMG 60
           M++ D +  KK+H+ L ++P  +M   EW  +D + + +IRL LS NVA  VA +K   G
Sbjct: 24  MQIEDYLYGKKLHQPLSKKP-EKMDQDEWELLDRQVLGVIRLTLSKNVAHNVAKEKITEG 83

Query: 61  LMKALTEKYEKLSSNSKVYLIMIYFNIHMEEDSSVNSHVNEVTKLMNKLESMEITFSREV 120
           LMK L++ YEK S+N+KV+L+   F++ MEE   V +HVNE   ++N+L S+EI F  EV
Sbjct: 84  LMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGLVAAHVNEFNTIVNQLSSVEIEFEDEV 143

Query: 121 KAIKLLSSLPNNWKTMKTAMSNFLGDKSLKFSDICDAAIAKEIQRKGSGE 171
           +A+ LL+SLPN+W+ M+ A+SN +G + LKF+D+ D  +A+E++R  SGE
Sbjct: 144 RALILLASLPNSWEPMRAAVSNSVGTQKLKFNDVRDRILAEEVRRIDSGE 192

[Close]

BLAST of Moc11g30880 vs. ExPASy TrEMBL
Match: A0A0D3DMW7 (CCHC-type domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.6e-29
Identity = 74/170 (43.53%), Postives = 116/170 (68.24%), Query Frame = 0


Query: 1   MKVTDVITYKKIHKTLKEQPATRMTDKEWTEMDEKAVAIIRLCLSTNVASLVASQKTAMG 60
           M++ D +  KK+H+ L ++P  +M   EW  +D + + +IRL LS NV   +A +KT  G
Sbjct: 25  MQIEDYLYGKKLHQPLSKKP-EKMDQDEWELLDRQVLGVIRLTLSKNVTHNIAKEKTTEG 84

Query: 61  LMKALTEKYEKLSSNSKVYLIMIYFNIHMEEDSSVNSHVNEVTKLMNKLESMEITFSREV 120
           LMK L++ YEK S N+KV+L+   F++ MEE   V +HVNE   ++N+L S+EI F  EV
Sbjct: 85  LMKVLSDMYEKPSVNNKVFLMKKLFHLKMEEGGLVAAHVNEFNTIVNQLSSVEIEFDDEV 144

Query: 121 KAIKLLSSLPNNWKTMKTAMSNFLGDKSLKFSDICDAAIAKEIQRKGSGE 171
           +A+ LL+SLPN+W+ M+ A++N +G + LKF+D+ D  +A+E++R  SGE
Sbjct: 145 RALILLASLPNSWEPMRAAVNNSVGTQKLKFNDVRDRILAEEVRRIDSGE 193

[Close]

BLAST of Moc11g30880 vs. TAIR 10
Match: AT3G29785.1 (unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 2.5e-06
Identity = 29/78 (37.18%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 1  MKVTDVITYKKIHKTLKEQPATRMTDKEWTEMDEKAVAIIRLCLSTNVASLVASQKTAMG 60
          MK+ D +  KK+H+ L ++  T M+  +W  +  + + +IRL +S N+A  VA +K+  G
Sbjct: 19 MKIEDYLYGKKLHQPLGKKVET-MSQDDWNILYRQVLDVIRLTISKNIAHNVAKEKSPDG 78

Query: 61 LMKALTEKYEKLSSNSKV 79
          LMK L++ Y+K S+N+ V
Sbjct: 79 LMKVLSDIYKKPSTNNTV 95

The following BLAST results are available for this feature:

BLAST of Moc11g30880 vs. NCBI nr


Match Name	E-value	Identity	Description
VDD56318.1	3.6e-31	45.29	unnamed protein product [Brassica oleracea]	[more]
KAG7593230.1	6.7e-30	40.53	Pentatricopeptide repeat [Arabidopsis thaliana x Arabidopsis arenosa]	[more]
KAG7584790.1	6.7e-30	40.53	Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa]	[more]
KAG7561662.1	1.1e-29	40.00	Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa]	[more]
BBG97486.1	2.8e-28	36.84	hypothetical protein Prudu_006629 [Prunus dulcis]	[more]

BLAST of Moc11g30880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.0e-13	26.84	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Moc11g30880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A3P6FTI2	1.7e-31	45.29	Abhydrolase_3 domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC8T49...	[more]
A0A0D3BM55	2.9e-31	45.88	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1	[more]
A0A0D3AEM1	5.0e-31	44.71	CCHC-type domain-containing protein OS=Brassica oleracea var. oleracea OX=109376...	[more]
A0A0D3CS45	4.2e-30	44.71	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1	[more]
A0A0D3DMW7	1.6e-29	43.53	CCHC-type domain-containing protein OS=Brassica oleracea var. oleracea OX=109376...	[more]

BLAST of Moc11g30880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29785.1	2.5e-06	37.18	unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 29..166 e-value: 5.2E-25 score: 87.8
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 1..189
None	No IPR available	PANTHER	PTHR34676:SF1	ZINC FINGER, CCHC-TYPE, TUBBY C-TERMINAL-LIKE DOMAIN PROTEIN-RELATED	coord: 1..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g30880.1	Moc11g30880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding