Moc11g30870 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g30870
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	chr11: 22555623 .. 22558427 (+)
RNA-Seq Expression	Moc11g30870
Synteny	Moc11g30870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAAAACTTCAGATTCTTTGACAATCCAAAATTTCCATCAATGTTCCAGCCTCATCTCAATCAAGTTGAATTTCTCCAATTATCTCTTGTGGAAATCACAAGTTTTGCCTCTGATTAGGAACTTGAACCTTGAGGATCACTTGGAGCAAGGAAAGACAACTGATGAAGCAGTTGAAAATGGAACTGAGAAGAACAATCCTCAATCAAGCACATGGAAGAACAACGACAGCCTGCTGACATCTTGGCTGCTAGGAATCGTTTCAGAAGATGTGTTGGCAATGATAGAGGGAACCGAGACTGCTCAGTAGGTATGGTCTTCCCTTGAAGGATTGCTCTTAACAATGACTAAAGAAAATGAAATTCATATCAATGAAGAACTAATAAGTTTGAAAAAGGGGAACATGTCATTAGATGAGTATATAAAGAAGTTCAAAGGTATTTGTGATAAGTTGGCAGCCTTGAAGAAACCTCTAGATGATGCACAAAAGTTTTTCATCTAGCTAGAGGGTTGGGGTGAAATATAAAGAATATCGCACAGCAATGCTCACAAAGCCACCTTATCCTACCTATAACCAATTTGTTCTTGACTTAAAAGCATATGAACAGCAGCTGTCTTATGAGGAAGAAGAAGAAAAATCCAGCCAAATCAACCACAACCAAGCTTTCTACTCAAATCGTGGATGAGGAAATAGAAGTGGAAATAGAGGTAAATGAAGAAACTTTTCTTCCAAAGACAGAGGTTTTCAACATGGCAGACTAAGCTCCTCTCCTCAACAAGGTAATTCCAATTACACTCCACAGAATGATCCATCTAACAAGATCTCTAGAAATTTGTTCAAGCAAGATCCAAACTTTAGTTGTCAGATCTGTGGAAAATCAAACCACCCTGCCATCCAATGTTGGAAAAGGTTTGATCATTCTTACCAGCCTGAAGAAATTCCTGTTGCACTTGCTGCTATGCACTTAAACGAGGAGAATGATACAACCTTGTATGTTGATTCAGGAGCAACATCTCATATTGTTACTGATTCAGGTAATATTTCATCTCTTAAAACGTACAATGGATGTGAAAAACTTTTTGTAGGTAATGGACAAGGCTTGCATATATCACACACTGGAAACACAAAGTTAAATACAAAGAATGGTCAATTGAACCTTAGAAATGTGCTAGTAGTCCCAGATATGAAAAAGAACTTAATTTCTATAAGTAAACTTACTAAGGATAACAACTGCACAATCACTTTTTCTGCTAATGAGTTTACTGTGAAGAATCAACAAGGGGAAACACTAGCTAAAGGGCATGAACAAGGAGGCTTATATGCTATTGGGAGTCATCAACAACTATTGCAAGCCTTATATGCTACAACTAGCTCTAACAAAGCAAGTTTCTCAATTTGGCATAAAGGATTGGGACACTTGAATGACAACTTTCTAAAGATTCTTAGCAATAAACTGCTTATTAATGTATTTGATTGGAAGAAAGAAAATGTTATTTGTGTTAATTGTCAACTTAGTAAGAGTTGCAAGCTTCCTTTCATCGATAAAGCATCTTTAAGTACTCATCCTTTAGATAAAATTCACTGTGATTTGTGGGGTCCTGCTCCTGTTTTATCTTGTCAGCAATTTAAATATTATGTTGTGTTTGTGGATGATTACTCTAGGTATACTTGGTTACATCCATTGAAAAGAAAATTTGAGTTCTTTACTTGTTTTTGAAATTTCAAAGGATGGTTGAGAACCAATTAGAAAGGAAAATAAAAATTCTCCAAAGCGATGGAGGAGGAGAATTCAAATCTCTTGCTCTAAAAAACACTTGGAAGAAAATGGAATTCACCATCAATTTAACTGTTCTCACACTCCCCAACAAAATGGGGTGGCTGAGAGGAAGCATAGACATCTTGTAGAAACAGGTTTGGCTATATTATTCCAATCCAATACTTCTCTAAAATATTGGGTAGATAGTTTTCTTACTGCAAGTTTTCTTATAAATCGAAATCTCTAAATATGAAATCTCCTTTTTTAAAATTGTTTCTCAAAGAGCCAAGCTATAAAAATCTTAGAGTATTTGGGTGCAGATGTTTTCCATATCTAAGAGACTATGCTAAAAATAAATTTTCTAAAAAAACATATCCTTGCATTTTTATTGGATATAGTCCTTCACACAAAGGTTTTAGATGTCTTGATCCCAATACAAACTGCATTTACATATCAAGACATGTCATATTTGATGAAGAATGTTTTCCCTTTAAAAATAAAGGTGTTAACAAATCCGTGCAGCCTCTAGTTGTGACTAATTTTTCAGGTTTGGAAGAATGGATGGTTCAAGGAAATGACTCCACCAAAGAAATTACTTCAGACAACAACACCATTGGAAAAAAATCAATGTTGAAGTGACTACACCTGCTAGATTTCAAGACATCATAGTGGACGAAATCAAGGAAAATAATAAAGTAGAATCTACTAAATCAACCACGGTACAAATGCAAAAAGAAGACATTTCATCAACTACACCATGTATGCAGGAAGGAGACCCTCAATTTGCTCCAATTTCTGCACCAAGTCAAACAGGAATACTGCCCGATCCAAGACAATGTGATGATAGTTCTTCATCAAAGGCTTTACAAGGAATGAACCAGAAAGTGGAAAACATTATTGGCAATTCTGAAATCGTGCCTTATACCAATGAGCTTCCTAATCCTTCACTTAGTCACTCATCTCATGAATTACCTAACATTAGCAATCGATTGGTTATTGACTTAACTCGTTTAATGTACAGGACAAACAAAATCTCCATCTGTTAG

mRNA sequence

ATGACCAAAACTTCAGATTCTTTGACAATCCAAAATTTCCATCAATGTTCCAGCCTCATCTCAATCAAGTTGAATTTCTCCAATTATCTCTTGTGGAAATCACAAGTTTTGCCTCTGATTAGGAACTTGAACCTTGAGGATCACTTGGAGCAAGGAAAGACAACTGATGAAGCAGTTGAAAATGGAACTGAGAAGAACAATCCTCAATCAAGCACATGGAAGAACAACGACAGCCTGCTGACATCTTGGCTGCTAGGAATCGTTTCAGAAGATGTGTTGGCAATGATAGAGGGAACCGAGACTGCTCACTGTCTTATGAGGAAGAAGAAGAAAAATCCAGCCAAATCAACCACAACCAAGCTTTCTACTCAAATCGTGGATGAGGAAATAGAAGTGGAAATAGAGGAAGGAGACCCTCAATTTGCTCCAATTTCTGCACCAAGTCAAACAGGAATACTGCCCGATCCAAGACAATGTGATGATAGTTCTTCATCAAAGGCTTTACAAGGAATGAACCAGAAAGTGGAAAACATTATTGGCAATTCTGAAATCGTGCCTTATACCAATGAGCTTCCTAATCCTTCACTTAGTCACTCATCTCATGAATTACCTAACATTAGCAATCGATTGGTTATTGACTTAACTCGTTTAATGTACAGGACAAACAAAATCTCCATCTGTTAG

Coding sequence (CDS)

ATGACCAAAACTTCAGATTCTTTGACAATCCAAAATTTCCATCAATGTTCCAGCCTCATCTCAATCAAGTTGAATTTCTCCAATTATCTCTTGTGGAAATCACAAGTTTTGCCTCTGATTAGGAACTTGAACCTTGAGGATCACTTGGAGCAAGGAAAGACAACTGATGAAGCAGTTGAAAATGGAACTGAGAAGAACAATCCTCAATCAAGCACATGGAAGAACAACGACAGCCTGCTGACATCTTGGCTGCTAGGAATCGTTTCAGAAGATGTGTTGGCAATGATAGAGGGAACCGAGACTGCTCACTGTCTTATGAGGAAGAAGAAGAAAAATCCAGCCAAATCAACCACAACCAAGCTTTCTACTCAAATCGTGGATGAGGAAATAGAAGTGGAAATAGAGGAAGGAGACCCTCAATTTGCTCCAATTTCTGCACCAAGTCAAACAGGAATACTGCCCGATCCAAGACAATGTGATGATAGTTCTTCATCAAAGGCTTTACAAGGAATGAACCAGAAAGTGGAAAACATTATTGGCAATTCTGAAATCGTGCCTTATACCAATGAGCTTCCTAATCCTTCACTTAGTCACTCATCTCATGAATTACCTAACATTAGCAATCGATTGGTTATTGACTTAACTCGTTTAATGTACAGGACAAACAAAATCTCCATCTGTTAG

Protein sequence

MTKTSDSLTIQNFHQCSSLISIKLNFSNYLLWKSQVLPLIRNLNLEDHLEQGKTTDEAVENGTEKNNPQSSTWKNNDSLLTSWLLGIVSEDVLAMIEGTETAHCLMRKKKKNPAKSTTTKLSTQIVDEEIEVEIEEGDPQFAPISAPSQTGILPDPRQCDDSSSSKALQGMNQKVENIIGNSEIVPYTNELPNPSLSHSSHELPNISNRLVIDLTRLMYRTNKISIC

Homology

[Close]

BLAST of Moc11g30870 vs. NCBI nr
Match: XP_022154021.1 (uncharacterized protein LOC111021379 [Momordica charantia] >XP_022154022.1 uncharacterized protein LOC111021379 [Momordica charantia])

HSP 1 Score: 119.4 bits (298), Expect = 4.0e-23
Identity = 65/104 (62.50%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 1   MTKTSDSLTIQNFHQCSSLISIKLNFSNYLLWKSQVLPLIRNLNLEDHL-EQGKTTDEAV 60
           M    + LT+Q+FHQCSSLIS+KLN SNYLLWKSQVLPLIR L LE HL E+    DE  
Sbjct: 1   MALPENLLTVQSFHQCSSLISLKLNSSNYLLWKSQVLPLIRTLGLEHHLXEEAPVVDECK 60

Query: 61  -ENGTEKNNPQSSTWKNNDSLLTSWLLGIVSEDVLAMIEGTETA 103
            + G      Q  TW NND LLTSWLLGI++EDVL ++EGTETA
Sbjct: 61  GKEGESAXXTQVRTWINNDGLLTSWLLGIIAEDVLTLLEGTETA 104

[Close]

BLAST of Moc11g30870 vs. NCBI nr
Match: RVW35662.1 (hypothetical protein CK203_108171 [Vitis vinifera])

HSP 1 Score: 109.8 bits (273), Expect = 3.2e-20
Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 1   MTKTSDSLTIQNFHQCSSLISIKLNFSNYLLWKSQVLPLIRNLNLEDHLEQGKTTDEAVE 60
           M    + L+IQ FHQCSSL+SIKLN SN LLW+SQVLPL+R+L L  HL + +   E   
Sbjct: 1   MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASEET- 60

Query: 61  NGTEKNNPQS-STWKNNDSLLTSWLLGIVSEDVLAMIEGTETAH 104
            GTE    QS  TW +ND LLTSWLLG+++E+V+ +++GTETA+
Sbjct: 61  MGTETKETQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAY 103

[Close]

BLAST of Moc11g30870 vs. NCBI nr
Match: RVW19921.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 108.6 bits (270), Expect = 7.1e-20
Identity = 55/105 (52.38%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 1   MTKTSDSLTIQNFHQCSSLISIKLNFSNYLLWKSQVLPLIRNLNLEDHLEQGK-TTDEAV 60
           M    + L+IQ FHQCSSL+SIKLN SN LLW+SQVLPL+R+L L  HL + +  ++E +
Sbjct: 15  MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASEETM 74

Query: 61  ENGTEKNNPQS-STWKNNDSLLTSWLLGIVSEDVLAMIEGTETAH 104
              T++ + QS  TW +ND LLTSWLLG+++E+V+ +++GTETA+
Sbjct: 75  GTETKETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAY 119

[Close]

BLAST of Moc11g30870 vs. NCBI nr
Match: GAU44375.1 (hypothetical protein TSUD_243070 [Trifolium subterraneum])

HSP 1 Score: 108.2 bits (269), Expect = 9.3e-20
Identity = 58/99 (58.59%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 8   LTIQNFHQCSSLISIKLNFSNYLLWKSQVLPLIRNLNLEDHL--EQGKTTDEAVE-NGTE 67
           LTIQ+FHQCSSLISIKL+ SN+LLWKSQ+LPLIR+L LE H+  +  K  DE  + +GT+
Sbjct: 16  LTIQSFHQCSSLISIKLSTSNFLLWKSQILPLIRSLGLEHHITADTSKPDDEITDSSGTK 75

Query: 68  KNNPQSSTWKNNDSLLTSWLLGIVSEDVLAMIEGTETAH 104
             NP +  W  ND LLTSWLLG + E+ ++MI G +TAH
Sbjct: 76  IKNPDAVQWILNDGLLTSWLLGNMKEETVSMILGGDTAH 114

[Close]

BLAST of Moc11g30870 vs. NCBI nr
Match: PNY16899.1 (copia-like polyprotein, partial [Trifolium pratense])

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-19
Identity = 57/99 (57.58%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 8   LTIQNFHQCSSLISIKLNFSNYLLWKSQVLPLIRNLNLEDHL--EQGKTTDEAVE-NGTE 67
           LTIQ+FHQCSSL+S+KL+ SN+LLWKSQ+LPLIR+L LE H+     K  DE  + +GT+
Sbjct: 825 LTIQSFHQCSSLVSLKLSTSNFLLWKSQMLPLIRSLGLEHHITTNTSKPDDEITDSSGTK 884

Query: 68  KNNPQSSTWKNNDSLLTSWLLGIVSEDVLAMIEGTETAH 104
            NNP +  W  ND LLTSWLLG + E+ L+MI G +TA+
Sbjct: 885 TNNPNAVQWGLNDGLLTSWLLGNMKEETLSMILGGDTAY 923

[Close]

BLAST of Moc11g30870 vs. ExPASy TrEMBL
Match: A0A6J1DMG5 (uncharacterized protein LOC111021379 OS=Momordica charantia OX=3673 GN=LOC111021379 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.0e-23
Identity = 65/104 (62.50%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 1   MTKTSDSLTIQNFHQCSSLISIKLNFSNYLLWKSQVLPLIRNLNLEDHL-EQGKTTDEAV 60
           M    + LT+Q+FHQCSSLIS+KLN SNYLLWKSQVLPLIR L LE HL E+    DE  
Sbjct: 1   MALPENLLTVQSFHQCSSLISLKLNSSNYLLWKSQVLPLIRTLGLEHHLXEEAPVVDECK 60

Query: 61  -ENGTEKNNPQSSTWKNNDSLLTSWLLGIVSEDVLAMIEGTETA 103
            + G      Q  TW NND LLTSWLLGI++EDVL ++EGTETA
Sbjct: 61  GKEGESAXXTQVRTWINNDGLLTSWLLGIIAEDVLTLLEGTETA 104

[Close]

BLAST of Moc11g30870 vs. ExPASy TrEMBL
Match: A0A438DJK4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_108171 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 1   MTKTSDSLTIQNFHQCSSLISIKLNFSNYLLWKSQVLPLIRNLNLEDHLEQGKTTDEAVE 60
           M    + L+IQ FHQCSSL+SIKLN SN LLW+SQVLPL+R+L L  HL + +   E   
Sbjct: 1   MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASEET- 60

Query: 61  NGTEKNNPQS-STWKNNDSLLTSWLLGIVSEDVLAMIEGTETAH 104
            GTE    QS  TW +ND LLTSWLLG+++E+V+ +++GTETA+
Sbjct: 61  MGTETKETQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAY 103

[Close]

BLAST of Moc11g30870 vs. ExPASy TrEMBL
Match: A0A438C9J9 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_1040 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.4e-20
Identity = 55/105 (52.38%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 1   MTKTSDSLTIQNFHQCSSLISIKLNFSNYLLWKSQVLPLIRNLNLEDHLEQGK-TTDEAV 60
           M    + L+IQ FHQCSSL+SIKLN SN LLW+SQVLPL+R+L L  HL + +  ++E +
Sbjct: 15  MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASEETM 74

Query: 61  ENGTEKNNPQS-STWKNNDSLLTSWLLGIVSEDVLAMIEGTETAH 104
              T++ + QS  TW +ND LLTSWLLG+++E+V+ +++GTETA+
Sbjct: 75  GTETKETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAY 119

[Close]

BLAST of Moc11g30870 vs. ExPASy TrEMBL
Match: A0A2Z6P7T0 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_243070 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.5e-20
Identity = 58/99 (58.59%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 8   LTIQNFHQCSSLISIKLNFSNYLLWKSQVLPLIRNLNLEDHL--EQGKTTDEAVE-NGTE 67
           LTIQ+FHQCSSLISIKL+ SN+LLWKSQ+LPLIR+L LE H+  +  K  DE  + +GT+
Sbjct: 16  LTIQSFHQCSSLISIKLSTSNFLLWKSQILPLIRSLGLEHHITADTSKPDDEITDSSGTK 75

Query: 68  KNNPQSSTWKNNDSLLTSWLLGIVSEDVLAMIEGTETAH 104
             NP +  W  ND LLTSWLLG + E+ ++MI G +TAH
Sbjct: 76  IKNPDAVQWILNDGLLTSWLLGNMKEETVSMILGGDTAH 114

[Close]

BLAST of Moc11g30870 vs. ExPASy TrEMBL
Match: A0A2K3PNP5 (Copia-like polyprotein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g013628 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.9e-20
Identity = 57/99 (57.58%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 8   LTIQNFHQCSSLISIKLNFSNYLLWKSQVLPLIRNLNLEDHL--EQGKTTDEAVE-NGTE 67
           LTIQ+FHQCSSL+S+KL+ SN+LLWKSQ+LPLIR+L LE H+     K  DE  + +GT+
Sbjct: 825 LTIQSFHQCSSLVSLKLSTSNFLLWKSQMLPLIRSLGLEHHITTNTSKPDDEITDSSGTK 884

Query: 68  KNNPQSSTWKNNDSLLTSWLLGIVSEDVLAMIEGTETAH 104
            NNP +  W  ND LLTSWLLG + E+ L+MI G +TA+
Sbjct: 885 TNNPNAVQWGLNDGLLTSWLLGNMKEETLSMILGGDTAY 923

The following BLAST results are available for this feature:

BLAST of Moc11g30870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154021.1	4.0e-23	62.50	uncharacterized protein LOC111021379 [Momordica charantia] >XP_022154022.1 uncha...	[more]
RVW35662.1	3.2e-20	54.81	hypothetical protein CK203_108171 [Vitis vinifera]	[more]
RVW19921.1	7.1e-20	52.38	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
GAU44375.1	9.3e-20	58.59	hypothetical protein TSUD_243070 [Trifolium subterraneum]	[more]
PNY16899.1	1.2e-19	57.58	copia-like polyprotein, partial [Trifolium pratense]	[more]

BLAST of Moc11g30870 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g30870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DMG5	2.0e-23	62.50	uncharacterized protein LOC111021379 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A438DJK4	1.5e-20	54.81	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_108171 PE=4 SV=1	[more]
A0A438C9J9	3.4e-20	52.38	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A2Z6P7T0	4.5e-20	58.59	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Trifolium subt...	[more]
A0A2K3PNP5	5.9e-20	57.58	Copia-like polyprotein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g013628...	[more]

BLAST of Moc11g30870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g30870.1	Moc11g30870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane