Moc11g30730 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g30730
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr11: 22444123 .. 22449998 (+)
RNA-Seq Expression	Moc11g30730
Synteny	Moc11g30730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTGTATAAGCGAATAAGTGCATTTAGGAGAAAGACTACAGTTGGCACTGAGGTTGAGGGTGAGGTCTCTAGTTTGAGAACGGGCTTGGTTAGGTTGGCCAAGTGAAGAAGCTTTCCTTCCGGAGTCGTTGGGTGTGAGTGAAGAATGAAACATTAGGAACCACTTAGTTCGAGTGAGAGCACGTGACTTTGTCTCTTATGTTTTTTATAGACAATACGACATAGGATTGCTCAGTGTTAGGTAATCACAAATGGAGCATTGGTTGGTGTCAAGAATAAAGTAGAAGTCGTCGGTGCAATGGAAGTAGAGCATTGGTTGGTGCCAAGAAGATGTGTTGATAAATTACTGTTGGTGCAATTAGAACTGAGCCTTGGTGGTGGTGGTTTGCTAATACGAGGGACACTGCCGGTAAAATTGGTGTTTTGCCTCCTAGAGGGAGATTGTTAAGAATTGAAATCAAAACACTTAAAATAAAGAGTGTTAAAATTTGGGCTAAGAAACTTAAAAAGCCCCAAACTTCTTTTCTTCTAGGTTTGCCTCCATTTATATATGTATGTCACAAACTCAATTTTTTGGTTTTGAGCTGACAAGAAAACATAAGCTGTGGGAACAAAATTCGTGTGTCATTGCACATATTTTGAAGGGCCGGTCGTGGTGTGTAGTTGCACAAAATTGTGGCAGCAACAACTTTGGCAGAGCAAAAAGATCGAGATCCCTAGGGGTTGTAGTGCATCATCGGCAACTAGTTCTCGTGGGTATTTGGTGAGGTTTTTCATTCCTGTATTTATAAGATTCTATTGTTGTAGTTCCTAGAAGCTAGGGGCTTTTGTTGAGACCTCTAAATTTGAGAGATTATTGTATTACACATTGTTTATCCCAAAATCATAGTAGAATCCGTTGTTGCGGACGATTGGACGACGTAGCCGATAGTTGGGTGAACCAGTATAAATTGTTTGTGTCGTATTGTGCGTTTTCCCTGTATCTCTTATTATTGTGCATGGTTGATTGTGTTTTTCACCAACTGTGGAAGTAAAAAAGTTATTGGTAAGTAATTTTCCTAACATTGGGCTTAATGGGGTTTAGGGAAAGTCTATAAATAGGATAAAGGGCTATGGTCTCCATACTCTGAACATAATAAGGTACCGTAAAAAATGCATTGGATTCAGGTTTTATTTTATACACTATATCATTCTTAAATACAACTGATATGGCCAAAAAAAAAAACCTAGTGGAAATAGTAGGAAAAATTTTCTAAACTAGTATAACTAAAAACTGTATCATATTTCTAACTCAATTCTATGGTTTAGTATAAAAAAAATTTGAAAGGGTATATTTATGTATGAATTTTGTTACAATGACTTATTCCGTTATTAGTTTATTTTTATGAACTGTTGCTTGAAATTCTATATGTTTAGCTTCTTTGGGAATTTTAAGTATTTTATATGATTTTTCCATCATGTGTGTGAATTTTATAAGTGACATATTATTGAGCTATGATTTTAGCAAAATATACGAGTTCCCAAAATTATTTTATCCTAAAGTTGATTATTGATGAATTCAATTGTAAAAATTTATTATTGAGTTATGATTTAATTATTTTACTGACTACGAGTTACCAACGCAATTTTACAAAGATGATTGTCTTTGTCTTTGGTGTATGTCTCAAAGTGAGACCATTAGTGAAATGCATTGACTAATCAAGTCTTTTCTTTATTATTATTAATATTTATTTTATGGAAAAAATATGAATTTCACAACGGCACAAAAATAATAAAAAGACCGATAAAGAACATCCTAGATTAAAAAAAACAACCAAATTATGGAAATCAATTGATCAATCACAATAACTAATATAACTATCATGAGTTCGATCATCGGTTCATAGTCCGATTTAGATCAAAAAGATTTAGAGTGAAGGAAACTCCATAATGATAACGTCTGCCTTAAAATTAATTTTTATGAGTTTGTTATATTTTTGTAATATTTTATATAAATTATGTATCTATTATCCTAAACAAACATAACTTTTCTTACTAGTCTCATCCAACACATAATTTTTCTCGCTCTTTGATCTCCATACACTTTCTTTCACTTTTCTTCTCTTACCGCAAGGCACCCAATTATTTTATTTTATTTTCACAATCTTTTATAGTATAATAAACAAGAGTGGTGGATTGAACTTGCAGCCTCTTGATTGGAGATATATGTCAATTATCACTGAGCCATGATCATTTTAGCTTTCTCTACTTGTTTAGCGAGTGAGAAAGTTGGTTTGATTATTACTTGTTTATATTGTTTATTTGGTTGAAATAAGTGCTCAAGTACTCTTTCAACACGTTTACGTTGTTTTGTACTATTCTAACCATTTAAACTATCGAGTAAATTGTTTAACCATTATTATGTCAATTTAACAATAGATTCATGAAACTTAATTGGTAACTATTGTCTACATGACATATTTTAAGTTTGATACGGATAATCTAAGATTCTTTACTGTTGATGTAGGAATTTGGCCTCCTGGAATTTCGACAAATTCGCACCAATCTTCTATAATAAAAAGGATTGACGAGACCTGCAAAATAGAACAGCATTAAAGATCGGTGTGGCTCTTGCCACACAAGCTCTGATGCTTAAGTCAGAATCGGAGTAGTTGAGTATAAAGTGTAGAGTTCGTGAGCAGGGTTTGAGTTACTTCCCTATTTATATAGGAGTTGAATCCTGATCCTTGGTGGAATTGGAATTCTAATACATCTAGGAAATTTTGTTAGCTGAATCTGCGGAGAATCTTGAGGCAATGAAGATATATTTTCTTTTGAATATAGGATATCTTCTCCTATCATAAGTGTTGGGCCGTGTGTCAACCTTTGGCCCCTTTTGTTTCTATGCTGAAAATGTTTGTTTGGGCTAGCAGTAACTCTCCAATTCATTTGTTTTTATAGTAGGTTAAGAACGGTTCATTGTTTTAGGGCACCCATCATGATATAAGGAAAAAAAAAAAGGAAAACAGTGGCTTCTTTTTTTTGTTCCTTCTTCTGGGTGAAGCTGCCGGCAAAAGAGAACACAGTGGAGAGAAAGAAAAACTTTGTGGGTTCTTTCTTATGTGTGAGTACCGAAAGTGAGAGAGAGGAAGAGGGTGATGAGTGTTGCAAAGTTCCTTGGGTATTTTCCTCATTATTTTGTATCACTCCTCTTGAAGGTGAGTTCCTTTTACTGGGTCTCAAGCCTTGTTTTGGGTGCTGTAATTTTTCTATATTTTTGTCCCAACCTTGTATTGTTGCTGTTGCTTGGTCGATATGAATGGAATGAATGGATCGTCACAGTGGATGTAGATCACGTTGATCGAACCACTATAAATCAGTGTGTTATTCATTCTCTCTTACTCAATTATTTGTTATATTTATTGTTGGAACTTATTGGCTATTATATATTTTTTTGAAATTGTTGGTGCTATTAGCGTAAGTTGGAATCACCCAACAAGTGGTATCAGAGCCTCGTTTGAGCATTTTTTTACAGAAAGCATTTATCAGAAAATTTGGAAAGATTTTTTATTGGTGAATCTTGAAAATGGCTACTAAGTTTCAGCTAGAGAAATTTGATGGCAAGGGTGATTTGGATTATGGAAAAAGAAGATGAGAGCGCTTTTAGTGCAACAAAAGGTTGCTAAAGCTCTTGATGATCCGAAGAATTACCCCACTGAAATGAAGGAAGAAGAGAAGGAAGAAATGCTTGATTTAGCCTTTAGTACACTGATTTTGTATTTGTCGGATAATGTTTTACGACAGGTTGATGATGCCACCACATCCTTAGAGATATGGCAAAAGTTAGATAAGTTATATCTTGTCAAGTCTTTGTCGAACGAGATATATCTCAAGGAGAAATTCTTTAGTTTTAGGATGGATCCTTCAAAACCATTAGATGCAAATTTAGATGAGTTTAATAAAATTTTCCTTGATTTAGCCAACATTGGTGAGAAAATGTCTGATGAAAATCAAGCGGTAATTTTGTTAAATTCACTGCCCGATTCATATAGAGAAATCAAGACAGCAATTAAGTACGGAAGAGACAACTTGGATATGGAGATAGTTCTGAATGTTTTGAAATTAAAAGAACTTGAGATCAAGCTGGAGAAGAAGGACAGTGAAGCACTGTATACTCGGGATAGAGCAAAGAAGAAAAATTACAGCAAGCAGAAAGGGAAATCTCGGTCAAAATCGAGAGCGAAAGGTAAAAAGTGTTACAATTGTCAGAAGGAAGGGCATTTTAAAAGAAATTGTCCTTTGTTGGAAAAGAACAAACAGTCTAACCAAGAAAAGGCCGAGGGGGAGAGTTCAGCAAATATATTGGATGGTTATGAATCAGCTGAGGTTTTGTTGGTTTCAGGGAATGAATGGTCAGACGACTGGGTTTTGGACTCAGGTTGTACTTTTCATATGACACCTTCAAGGGAATACTTCAGTGACTTTAAACCATTGCAAGTTGGAAAAGTTTATCTCGGTAACAATCAGATCTGTGAGATCAAAGGGATTGGCACGGTGAGACTGAGACTTCATGATAATCTGGTGAAAGTTTTGACTGATGTGAGGTATATCCCTAACTTGAAAAGAAACCTTATCTCTCTTGGAACTTTAGATAAGCTTGGTTATACCAGCAAGATAGCGAATGGTGAGATGAAAGTATATAAAGGCTCACTGTTGAAGCTAAAGGGAAAGCTCAAAAATGGGCTTTATGTGCTAAGTAGTCAGACGGTGTCAGGAAATCTCTCACTTGTTTCTGATGATGTGGATAGAAATGTCAGAGCTACAAAACTCTGGCATACACGTTTGGGGTATGTTAGTGAGAAAGGCATGAAAGAGTTGAGTAATCAGGGGATTTTAAGCTTGAAGTAAGTGGGTGATTTTCCTATTTGTGAACATTGCATTTTTGGCAAGTCTACAAGGGTAAAATTCACAAAGGGAACACATTGCACAAAAGAAAAGCTTGATTATATTCATGCAGACTTATGGGGGCCAGCAAATGTGAGTACTCATGGAGGAGTCAAGTACTTTCTATCCATTGTGGATGACTATAGCAGAAAAGTGTGGCTTTATTTCTTGAAGCATAAAGGTGAGATAGTGTCAAAGTTCAGGGATTGGCTTACTTTGGTTCAGAATCAGACTGGGAAGAAAATGAAGAAAATCAGGACTGATAGAGGACTTGAGTTTGTGAATCGAGAGTTTAATGAACTTTGCTCGACACATGGTATTGCAAGACACTTAACAGTTGGTTACACTCCACAACAAAATGGTCTTGTTGAACGCATCAATAGAACCATTTTGGAAGGGGTAAGGTGTTTATTATCTCAATCAAACTTGCCCAAGTCGTTTTGGGGGGAAGCAACAACCACAGCGTGTTCTTTGATAAATAGAACACCTTCATCAGCTGTTGAATTCAAAATGCCTGAGGAGATGTGGAGTGGAGTAAAACCAGACATTTCTCACTTGAGAGCCTTTGGATGTACTGCATATACTCACATAAATCAAGCCAAGCTTGAACCTAGAGCCTTAAAGTGTGTCTTTATAGGTTATCCAGAAGGAGTAAAGGGCTACAAAATGTGGTGTTTGGAACCGAATAGAAGCAAATGTATAATAAACAAAGATGTTAAGTTTGATGAATGGAGTATGTCATACTCAAAATCGAAAACATCAATAGAGGAAACATCTCAAGGCTTAGATACATTTGAGATTGAGGTAGAGCCCACTTCAATCCAAAGGCAAGTCACTTCTAACAACATACCAAACACATCAACAAGTACTGAACCAGAAGTTAGTACTGAGCAGATTGATGAGGATGATGGCAGTGATCAAGAATCAGAAGCACAGGGGATTGAGTAG

mRNA sequence

ATGAAGTTGTATAAGCGAATAAGTGCATTTAGGAGAAAGACTACAGTTGGCACTGAGGTTGAGGGTGAGGTCTCTAGTTTGAGAACGGGCTTGGTAATCACAAATGGAGCATTGGTTGGTGTCAAGAATAAAGTAGAAGTCGTCGGTGCAATGGAAGTAGAGCATTGGTTGGTGCCAAGAAGATGTGTTGATAAATTACTGTTGGTGCAATTAGAACTGAGCCTTGGTGGTGGTGGTTTGCTAATACGAGGGACACTGCCGCTGCCGGCAAAAGAGAACACAGTGGAGAGAAAGAAAAACTTTGTGGGTTCTTTCTTATGTGTGAGTACCGAAAGTGAGAGAGAGGAAGAGGGTGATGAGTGTTGCAAAGTTCCTTGGGTATTTTCCTCATTATTTTGTATCACTCCTCTTGAAGTGCAACAAAAGGTTGCTAAAGCTCTTGATGATCCGAAGAATTACCCCACTGAAATGAAGGAAGAAGAGAAGGAAGAAATGCTTGATTTAGCCTTTAGTACACTGATTTTGTATTTGTCGGATAATGTTTTACGACAGGTTGATGATGCCACCACATCCTTAGAGATATGGCAAAAGTTAGATAAGTTATATCTTGTCAAGTCTTTGTCGAACGAGATATATCTCAAGGAGAAATTCTTTAGTTTTAGGATGGATCCTTCAAAACCATTAGATGCAAATTTAGATGAGTTTAATAAAATTTTCCTTGATTTAGCCAACATTGGTGAGAAAATGTCTGATGAAAATCAAGCGGTAATTTTGTTAAATTCACTGCCCGATTCATATAGAGAAATCAAGACAGCAATTAAGTACGGAAGAGACAACTTGGATATGGAGATAGTTCTGAATGTTTTGAAATTAAAAGAACTTGAGATCAAGCTGGAGAAGAAGGACAGTGAAGCACTGTATACTCGGGATAGAGCAAAGAAGAAAAATTACAGCAAGCAGAAAGGGAAATCTCGGTCAAAATCGAGAGCGAAAGAGGAAACATCTCAAGGCTTAGATACATTTGAGATTGAGGTAGAGCCCACTTCAATCCAAAGGCAAGTCACTTCTAACAACATACCAAACACATCAACAAGTACTGAACCAGAAGTTAGTACTGAGCAGATTGATGAGGATGATGGCAGTGATCAAGAATCAGAAGCACAGGGGATTGAGTAG

Coding sequence (CDS)

ATGAAGTTGTATAAGCGAATAAGTGCATTTAGGAGAAAGACTACAGTTGGCACTGAGGTTGAGGGTGAGGTCTCTAGTTTGAGAACGGGCTTGGTAATCACAAATGGAGCATTGGTTGGTGTCAAGAATAAAGTAGAAGTCGTCGGTGCAATGGAAGTAGAGCATTGGTTGGTGCCAAGAAGATGTGTTGATAAATTACTGTTGGTGCAATTAGAACTGAGCCTTGGTGGTGGTGGTTTGCTAATACGAGGGACACTGCCGCTGCCGGCAAAAGAGAACACAGTGGAGAGAAAGAAAAACTTTGTGGGTTCTTTCTTATGTGTGAGTACCGAAAGTGAGAGAGAGGAAGAGGGTGATGAGTGTTGCAAAGTTCCTTGGGTATTTTCCTCATTATTTTGTATCACTCCTCTTGAAGTGCAACAAAAGGTTGCTAAAGCTCTTGATGATCCGAAGAATTACCCCACTGAAATGAAGGAAGAAGAGAAGGAAGAAATGCTTGATTTAGCCTTTAGTACACTGATTTTGTATTTGTCGGATAATGTTTTACGACAGGTTGATGATGCCACCACATCCTTAGAGATATGGCAAAAGTTAGATAAGTTATATCTTGTCAAGTCTTTGTCGAACGAGATATATCTCAAGGAGAAATTCTTTAGTTTTAGGATGGATCCTTCAAAACCATTAGATGCAAATTTAGATGAGTTTAATAAAATTTTCCTTGATTTAGCCAACATTGGTGAGAAAATGTCTGATGAAAATCAAGCGGTAATTTTGTTAAATTCACTGCCCGATTCATATAGAGAAATCAAGACAGCAATTAAGTACGGAAGAGACAACTTGGATATGGAGATAGTTCTGAATGTTTTGAAATTAAAAGAACTTGAGATCAAGCTGGAGAAGAAGGACAGTGAAGCACTGTATACTCGGGATAGAGCAAAGAAGAAAAATTACAGCAAGCAGAAAGGGAAATCTCGGTCAAAATCGAGAGCGAAAGAGGAAACATCTCAAGGCTTAGATACATTTGAGATTGAGGTAGAGCCCACTTCAATCCAAAGGCAAGTCACTTCTAACAACATACCAAACACATCAACAAGTACTGAACCAGAAGTTAGTACTGAGCAGATTGATGAGGATGATGGCAGTGATCAAGAATCAGAAGCACAGGGGATTGAGTAG

Protein sequence

MKLYKRISAFRRKTTVGTEVEGEVSSLRTGLVITNGALVGVKNKVEVVGAMEVEHWLVPRRCVDKLLLVQLELSLGGGGLLIRGTLPLPAKENTVERKKNFVGSFLCVSTESEREEEGDECCKVPWVFSSLFCITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLDEFNKIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAKKKNYSKQKGKSRSKSRAKEETSQGLDTFEIEVEPTSIQRQVTSNNIPNTSTSTEPEVSTEQIDEDDGSDQESEAQGIE

Homology

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BLAST of Moc11g30730 vs. NCBI nr
Match: TYK25306.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 219.2 bits (557), Expect = 6.4e-53
Identity = 118/198 (59.60%), Postives = 153/198 (77.27%), Query Frame = 0


Query: 134 ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLE 193
           I  + VQ KVAK LD+ +  P  + E EK +M ++A+ST++LYLSD VLR VD+ATT+ E
Sbjct: 24  IRAILVQHKVAKILDE-ERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGE 83

Query: 194 IWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLDEFNKIFLDLANIGEKMSDEN 253
           +W+KL+ LYL KSL N+IY+KEKFF ++MD SK L+ NLDEF KI +DL NIGEKMSDEN
Sbjct: 84  LWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDEN 143

Query: 254 QAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAK 313
           QAVILLNSLP++YRE+K AIKYGRD+L M IVL+ LK + LEIK E+KD E L  R R++
Sbjct: 144 QAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARGRSE 203

Query: 314 KKNYSKQKGKSRSKSRAK 332
           KK++  ++   RSKS+ K
Sbjct: 204 KKSWKGKERSFRSKSKGK 220

[Close]

BLAST of Moc11g30730 vs. NCBI nr
Match: KAA0050719.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 218.8 bits (556), Expect = 8.4e-53
Identity = 118/198 (59.60%), Postives = 153/198 (77.27%), Query Frame = 0


Query: 134 ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLE 193
           I  + VQ KVAK LD+ +  P  + E EK +M ++A+ST++LYLSD VLR VD+ATT+ E
Sbjct: 24  IRAILVQHKVAKILDE-ERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGE 83

Query: 194 IWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLDEFNKIFLDLANIGEKMSDEN 253
           +W+KL+ LYL KSL N+IY+KEKFF ++MD SK L+ NLDEF KI +DL NIGEKMSDEN
Sbjct: 84  LWKKLESLYLTKSLLNKIYIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDEN 143

Query: 254 QAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAK 313
           QAVILLNSLP++YRE+K AIKYGRD+L M IVL+ LK + LEIK E+KD E L  R R++
Sbjct: 144 QAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARGRSE 203

Query: 314 KKNYSKQKGKSRSKSRAK 332
           KK++  ++   RSKS+ K
Sbjct: 204 KKSWKGKERSFRSKSKGK 220

[Close]

BLAST of Moc11g30730 vs. NCBI nr
Match: KAA0050070.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 216.9 bits (551), Expect = 3.2e-52
Identity = 117/198 (59.09%), Postives = 153/198 (77.27%), Query Frame = 0


Query: 134 ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLE 193
           I  + VQ KVAK LD+ +  P  + E EK +M ++ +ST++LYLSD VLR VD+ATT  E
Sbjct: 24  IRAILVQHKVAKILDE-ERLPENITESEKRDMDEMTYSTILLYLSDEVLRLVDEATTIGE 83

Query: 194 IWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLDEFNKIFLDLANIGEKMSDEN 253
           +W+KL+ LY+ KSLSN+IY+KEKFF ++MD SK L+ NLDEF KI +DL NIGEKMSDEN
Sbjct: 84  LWKKLESLYMKKSLSNKIYIKEKFFGYKMDQSKGLEENLDEFQKIIVDLNNIGEKMSDEN 143

Query: 254 QAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAK 313
           QAVILLNSLP+ YRE+K AIKYGRD+L+M I+L+ LK + LEIK E+KD E L  R R++
Sbjct: 144 QAVILLNSLPEIYREVKAAIKYGRDSLNMSIMLDALKTRNLEIKKERKDGELLMARRRSE 203

Query: 314 KKNYSKQKGKSRSKSRAK 332
           KK++  ++  SRSKS+ K
Sbjct: 204 KKSWKGKERSSRSKSKEK 220

[Close]

BLAST of Moc11g30730 vs. NCBI nr
Match: TYK10340.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 216.1 bits (549), Expect = 5.5e-52
Identity = 117/198 (59.09%), Postives = 152/198 (76.77%), Query Frame = 0


Query: 134 ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLE 193
           I  + +Q KVAK LD+ +  P  + E EK +M ++ +ST++LYLSD VLR VD+ATT  E
Sbjct: 24  IRAILIQHKVAKILDE-ERLPENITESEKRDMDEMTYSTILLYLSDEVLRLVDEATTIGE 83

Query: 194 IWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLDEFNKIFLDLANIGEKMSDEN 253
           +W+KL+ LYL KSLSN+IY+KEKFF ++MD SK L+ NLDEF KI +DL NIGEKMSDEN
Sbjct: 84  LWKKLESLYLKKSLSNKIYIKEKFFGYKMDQSKSLEENLDEFQKIIVDLNNIGEKMSDEN 143

Query: 254 QAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAK 313
           QAVILLNSLP+ YRE+K AIKYGRD+L+M I+L+ LK + LEIK E KD E L  R R++
Sbjct: 144 QAVILLNSLPEIYREVKAAIKYGRDSLNMSIMLDALKTRNLEIKKECKDGELLMARRRSE 203

Query: 314 KKNYSKQKGKSRSKSRAK 332
           KK++  ++  SRSKS+ K
Sbjct: 204 KKSWKGKERSSRSKSKGK 220

[Close]

BLAST of Moc11g30730 vs. NCBI nr
Match: KAA0047995.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 212.6 bits (540), Expect = 6.0e-51
Identity = 116/198 (58.59%), Postives = 151/198 (76.26%), Query Frame = 0


Query: 134 ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLE 193
           I  + VQ KVAK LD+ +  P  + E EK +M ++A+ T++LYLSD VLR VD+ATT+ E
Sbjct: 24  IRAILVQHKVAKILDE-ERLPDNITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGE 83

Query: 194 IWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLDEFNKIFLDLANIGEKMSDEN 253
           +W+KL+ LYL KSL N+IY+KEKFF ++MD SK L+ NLDEF KI +DL NIGEKMSDEN
Sbjct: 84  LWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDEN 143

Query: 254 QAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAK 313
           QAVILLNSLP++YRE+K AIKYG D+L M IVL+ LK + LEIK E+KD E L  R R++
Sbjct: 144 QAVILLNSLPETYREVKAAIKYGWDSLTMSIVLDALKTRNLEIKKERKDGELLMARGRSE 203

Query: 314 KKNYSKQKGKSRSKSRAK 332
           KK++  ++   RSKS+ K
Sbjct: 204 KKSWKGKERSFRSKSKGK 220

[Close]

BLAST of Moc11g30730 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.0e-24
Identity = 67/200 (33.50%), Postives = 117/200 (58.50%), Query Frame = 0


Query: 137 LEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQ 196
           L +QQ + K LD     P  MK E+  ++ + A S + L+LSD+V+  + D  T+  IW 
Sbjct: 27  LLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWT 86

Query: 197 KLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLDEFNKIFLDLANIGEKMSDENQAV 256
           +L+ LY+ K+L+N++YLK++ ++  M       ++L+ FN +   LAN+G K+ +E++A+
Sbjct: 87  RLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAI 146

Query: 257 ILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAK--- 316
           +LLNSLP SY  + T I +G+  ++++ V + L L E   K  +   +AL T  R +   
Sbjct: 147 LLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLNEKMRKKPENQGQALITEGRGRSYQ 206

Query: 317 --KKNYSKQKGKSRSKSRAK 332
               NY +   + +SK+R+K
Sbjct: 207 RSSNNYGRSGARGKSKNRSK 226

[Close]

BLAST of Moc11g30730 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 64.3 bits (155), Expect = 3.5e-09
Identity = 52/175 (29.71%), Postives = 90/175 (51.43%), Query Frame = 0


Query: 132 FCITPLEVQQKVAKALDD--PKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDAT 191
           F I  L  +Q V K +D   P       K+ E+      A ST+I YLSD+ L       
Sbjct: 21  FRIRALLAEQDVLKVVDGLMPNEVDDSWKKAER-----CAKSTIIEYLSDSFLNFATSDI 80

Query: 192 TSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLDEFNKIFLDLANIGEKM 251
           T+ +I + LD +Y  KSL++++ L+++  S ++     L ++   F+++  +L   G K+
Sbjct: 81  TARQILENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHIFDELISELLAAGAKI 140

Query: 252 SDENQAVILLNSLPDSYREIKTAIK-YGRDNLDMEIVLNVLKLKELEIKLEKKDS 304
            + ++   LL +LP  Y  I TAI+    +NL +  V N L  +E++IK +  D+
Sbjct: 141 EEMDKISHLLITLPSCYDGIITAIETLSEENLTLAFVKNRLLDQEIKIKNDHNDT 190

[Close]

BLAST of Moc11g30730 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 3.1e-53
Identity = 118/198 (59.60%), Postives = 153/198 (77.27%), Query Frame = 0


Query: 134 ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLE 193
           I  + VQ KVAK LD+ +  P  + E EK +M ++A+ST++LYLSD VLR VD+ATT+ E
Sbjct: 24  IRAILVQHKVAKILDE-ERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGE 83

Query: 194 IWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLDEFNKIFLDLANIGEKMSDEN 253
           +W+KL+ LYL KSL N+IY+KEKFF ++MD SK L+ NLDEF KI +DL NIGEKMSDEN
Sbjct: 84  LWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDEN 143

Query: 254 QAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAK 313
           QAVILLNSLP++YRE+K AIKYGRD+L M IVL+ LK + LEIK E+KD E L  R R++
Sbjct: 144 QAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARGRSE 203

Query: 314 KKNYSKQKGKSRSKSRAK 332
           KK++  ++   RSKS+ K
Sbjct: 204 KKSWKGKERSFRSKSKGK 220

[Close]

BLAST of Moc11g30730 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 4.1e-53
Identity = 118/198 (59.60%), Postives = 153/198 (77.27%), Query Frame = 0


Query: 134 ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLE 193
           I  + VQ KVAK LD+ +  P  + E EK +M ++A+ST++LYLSD VLR VD+ATT+ E
Sbjct: 24  IRAILVQHKVAKILDE-ERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGE 83

Query: 194 IWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLDEFNKIFLDLANIGEKMSDEN 253
           +W+KL+ LYL KSL N+IY+KEKFF ++MD SK L+ NLDEF KI +DL NIGEKMSDEN
Sbjct: 84  LWKKLESLYLTKSLLNKIYIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDEN 143

Query: 254 QAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAK 313
           QAVILLNSLP++YRE+K AIKYGRD+L M IVL+ LK + LEIK E+KD E L  R R++
Sbjct: 144 QAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMARGRSE 203

Query: 314 KKNYSKQKGKSRSKSRAK 332
           KK++  ++   RSKS+ K
Sbjct: 204 KKSWKGKERSFRSKSKGK 220

[Close]

BLAST of Moc11g30730 vs. ExPASy TrEMBL
Match: A0A5A7U459 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00520 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.5e-52
Identity = 117/198 (59.09%), Postives = 153/198 (77.27%), Query Frame = 0


Query: 134 ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLE 193
           I  + VQ KVAK LD+ +  P  + E EK +M ++ +ST++LYLSD VLR VD+ATT  E
Sbjct: 24  IRAILVQHKVAKILDE-ERLPENITESEKRDMDEMTYSTILLYLSDEVLRLVDEATTIGE 83

Query: 194 IWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLDEFNKIFLDLANIGEKMSDEN 253
           +W+KL+ LY+ KSLSN+IY+KEKFF ++MD SK L+ NLDEF KI +DL NIGEKMSDEN
Sbjct: 84  LWKKLESLYMKKSLSNKIYIKEKFFGYKMDQSKGLEENLDEFQKIIVDLNNIGEKMSDEN 143

Query: 254 QAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAK 313
           QAVILLNSLP+ YRE+K AIKYGRD+L+M I+L+ LK + LEIK E+KD E L  R R++
Sbjct: 144 QAVILLNSLPEIYREVKAAIKYGRDSLNMSIMLDALKTRNLEIKKERKDGELLMARRRSE 203

Query: 314 KKNYSKQKGKSRSKSRAK 332
           KK++  ++  SRSKS+ K
Sbjct: 204 KKSWKGKERSSRSKSKEK 220

[Close]

BLAST of Moc11g30730 vs. ExPASy TrEMBL
Match: A0A5D3CG50 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00150 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.6e-52
Identity = 117/198 (59.09%), Postives = 152/198 (76.77%), Query Frame = 0


Query: 134 ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLE 193
           I  + +Q KVAK LD+ +  P  + E EK +M ++ +ST++LYLSD VLR VD+ATT  E
Sbjct: 24  IRAILIQHKVAKILDE-ERLPENITESEKRDMDEMTYSTILLYLSDEVLRLVDEATTIGE 83

Query: 194 IWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLDEFNKIFLDLANIGEKMSDEN 253
           +W+KL+ LYL KSLSN+IY+KEKFF ++MD SK L+ NLDEF KI +DL NIGEKMSDEN
Sbjct: 84  LWKKLESLYLKKSLSNKIYIKEKFFGYKMDQSKSLEENLDEFQKIIVDLNNIGEKMSDEN 143

Query: 254 QAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAK 313
           QAVILLNSLP+ YRE+K AIKYGRD+L+M I+L+ LK + LEIK E KD E L  R R++
Sbjct: 144 QAVILLNSLPEIYREVKAAIKYGRDSLNMSIMLDALKTRNLEIKKECKDGELLMARRRSE 203

Query: 314 KKNYSKQKGKSRSKSRAK 332
           KK++  ++  SRSKS+ K
Sbjct: 204 KKSWKGKERSSRSKSKGK 220

[Close]

BLAST of Moc11g30730 vs. ExPASy TrEMBL
Match: A0A5A7U2U7 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00590 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.9e-51
Identity = 116/198 (58.59%), Postives = 151/198 (76.26%), Query Frame = 0


Query: 134 ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLE 193
           I  + VQ KVAK LD+ +  P  + E EK +M ++A+ T++LYLSD VLR VD+ATT+ E
Sbjct: 24  IRAILVQHKVAKILDE-ERLPDNITESEKRDMDEMAYWTILLYLSDEVLRLVDEATTTGE 83

Query: 194 IWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLDEFNKIFLDLANIGEKMSDEN 253
           +W+KL+ LYL KSL N+IY+KEKFF ++MD SK L+ NLDEF KI +DL NIGEKMSDEN
Sbjct: 84  LWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKILEENLDEFQKIVVDLNNIGEKMSDEN 143

Query: 254 QAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAK 313
           QAVILLNSLP++YRE+K AIKYG D+L M IVL+ LK + LEIK E+KD E L  R R++
Sbjct: 144 QAVILLNSLPETYREVKAAIKYGWDSLTMSIVLDALKTRNLEIKKERKDGELLMARGRSE 203

Query: 314 KKNYSKQKGKSRSKSRAK 332
           KK++  ++   RSKS+ K
Sbjct: 204 KKSWKGKERSFRSKSKGK 220

The following BLAST results are available for this feature:

BLAST of Moc11g30730 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK25306.1	6.4e-53	59.60	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0050719.1	8.4e-53	59.60	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0050070.1	3.2e-52	59.09	putative polyprotein [Cucumis melo var. makuwa]	[more]
TYK10340.1	5.5e-52	59.09	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0047995.1	6.0e-51	58.59	retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa...	[more]

BLAST of Moc11g30730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.0e-24	33.50	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.5e-09	29.71	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Moc11g30730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DNU1	3.1e-53	59.60	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7UB25	4.1e-53	59.60	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5A7U459	1.5e-52	59.09	Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675...	[more]
A0A5D3CG50	2.6e-52	59.09	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7U2U7	2.9e-51	58.59	Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku...	[more]

BLAST of Moc11g30730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 168..292 e-value: 1.1E-30 score: 106.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 346..370
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 371..385
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 311..391
None	No IPR available	PANTHER	PTHR34676:SF12	ZINC FINGER, CCHC-TYPE, RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN PROTEIN-RELATED	coord: 156..359
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 156..359

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g30730.1	Moc11g30730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016311	dephosphorylation
biological_process	GO:0015074	DNA integration
biological_process	GO:0005986	sucrose biosynthetic process
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0050307	sucrose-phosphate phosphatase activity
molecular_function	GO:0008270	zinc ion binding