Moc11g30630 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g30630
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr11: 22366558 .. 22368093 (-)
RNA-Seq Expression	Moc11g30630
Synteny	Moc11g30630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAATTACAGATCTTCTTACATACAAGAAAATTCACAAAATCCTGAAAGAACGACCGACCACTGGGATTTCAGATAAAGAGTGGACAAAGATGGATGAACAAGCGGTAGTAATCATCAAGCTATGTTTGATGATGAATGTGGCGAGTCTCGTGCCAAGCCAGAAAGAAGCAATGAGATTGATGAAGGCTTTGACTGACAGGTATGAAAAATCTTCTGCCAACAACAAGGTGTTTCTTATTACGAGATACTTCAACATCCACATGGAGGAGAGTACTGAAAGGATGTGCATCTTGGAGGCGGAAGCAGTAGAACGTGTTCTTGAATTTCTTTTGAAATTTAAAACATAGAAAAATATAAAACAGAGAAGAATGTTGGATTTTACCTTTGAAGACTCTTCTTCGTGTAAACCCAATAAGACGACACCACTTGATCTTCCTTACTAAGTCTCTCGGTCGAAAATCCGAATTGTGGGATCCAATTTCAAGGGATTGAGAGAGTAAGATTAACTATCTCTTTGTCTCTTTCAAGTCTCAAAGTTTTCATGTTTGATATTATGTGTGGTCACACAATTCCAAATGTGATTATCAATTACAAGAATAGAAATGCTTAGTTGTTCAAATCAATCTAGTGGCTTCAAAGTTCTAAACTTTTTTTTCGTTCAAATTCTTTTTTATTTTTATTTTTTAAATGTATTCATATGGTTGATTGTTCAATACTTTAATATATGAGATTTGTTTAGATTTACTTATAATTTGAATATTTCTACAATAAAATATAAATATAGATATGAAAAGCTTTACTTAGAATATGAAATACATATGAAAGTTTTACTTAGAATATCATGTATGGTACATTATAATATATATGATCCACTAAGATGAGAAAATATTTATTCTAAATTAATTGGTTTATTGGTAGAAAAAAGTCTCATTAGAGAAAATTGTTTAATTTTTCCAAAAGATGAAAATTCTAGACATTTTTCTAATATTCATTATACTAAAAAATTATCTAGCGGCAAAACCCGTGATAGAAATGAGATAGTTTGTGGTAAGTTATTTGGTTTTAATCTAATACAGTTTAATTAGGGGATGAATGAGTTAAAGATTAATCTTAGTTCACAACATAGAAATCATAAATTCAGTAATGAACACACATTTCATAGGAATGCTAGAGTTGATTTACCCATTAACAAAAATATTCCAGAATTGATTAATAAAGAAAAAGAACATTGGAATAAAGTATTTACAAGAATTATTGTTATTGTTAAAAAAAATTGATATATTCTATATTAAGGACTCTCAATCAAAGTTTTGTCTAAGGCCTCATATTATCTCGAGCCTGGCCAGAGCATGGAGGGAAAGGGGGAGCCTCACGCAATTCTCGAACATCTTGGAGGCCTACCCAGCTCGGGGGAGGACGGTCCGCTTGCCGACGATAGGCAACCACATGAGGACATACTCTATTATGCGAAAAGTCGCATGGATTGCTTTCGAGGCCTTGCGGTCGACGTTCGGTGGAACATGGATGGCTGA

mRNA sequence

ATGCAAATTACAGATCTTCTTACATACAAGAAAATTCACAAAATCCTGAAAGAACGACCGACCACTGGGATTTCAGATAAAGAGTGGACAAAGATGGATGAACAAGCGGTAGTAATCATCAAGCTATGTTTGATGATGAATGTGGCGAGTCTCGTGCCAAGCCAGAAAGAAGCAATGAGATTGATGAAGGCTTTGACTGACAGGTATGAAAAATCTTCTGCCAACAACAAGGTGTTTCTTATTACGAGATACTTCAACATCCACATGGAGGAGAGTACTGAAAGGATGTGCATCTTGGAGGCGGAAGCAGTAGAACGTAGCATGGAGGGAAAGGGGGAGCCTCACGCAATTCTCGAACATCTTGGAGGCCTACCCAGCTCGGGGGAGGACGGTCCGCTTGCCGACGATAGGCAACCACATGAGGACATACTCTATTATGCGAAAAGTCGCATGGATTGCTTTCGAGGCCTTGCGGTCGACGTTCGGTGGAACATGGATGGCTGA

Coding sequence (CDS)

ATGCAAATTACAGATCTTCTTACATACAAGAAAATTCACAAAATCCTGAAAGAACGACCGACCACTGGGATTTCAGATAAAGAGTGGACAAAGATGGATGAACAAGCGGTAGTAATCATCAAGCTATGTTTGATGATGAATGTGGCGAGTCTCGTGCCAAGCCAGAAAGAAGCAATGAGATTGATGAAGGCTTTGACTGACAGGTATGAAAAATCTTCTGCCAACAACAAGGTGTTTCTTATTACGAGATACTTCAACATCCACATGGAGGAGAGTACTGAAAGGATGTGCATCTTGGAGGCGGAAGCAGTAGAACGTAGCATGGAGGGAAAGGGGGAGCCTCACGCAATTCTCGAACATCTTGGAGGCCTACCCAGCTCGGGGGAGGACGGTCCGCTTGCCGACGATAGGCAACCACATGAGGACATACTCTATTATGCGAAAAGTCGCATGGATTGCTTTCGAGGCCTTGCGGTCGACGTTCGGTGGAACATGGATGGCTGA

Protein sequence

MQITDLLTYKKIHKILKERPTTGISDKEWTKMDEQAVVIIKLCLMMNVASLVPSQKEAMRLMKALTDRYEKSSANNKVFLITRYFNIHMEESTERMCILEAEAVERSMEGKGEPHAILEHLGGLPSSGEDGPLADDRQPHEDILYYAKSRMDCFRGLAVDVRWNMDG

Homology

[Close]

BLAST of Moc11g30630 vs. NCBI nr
Match: BBH05460.1 (hypothetical protein Prudu_016848 [Prunus dulcis])

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-10
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 1   MQITDLLTYKKIHKILKERPTTGISDKEWTKMDEQAVVIIKLCLMMNVASLVPSQKEAMR 60
           MQI D L  KK+++ L E    G++D++WT +D QA+ +I+L L  NVA  +  +K    
Sbjct: 23  MQIEDYLYQKKLYQPLSENKPEGMNDEDWTLLDRQALGVIRLTLSRNVAFNIAKEKTTAG 82

Query: 61  LMKALTDRYEKSSANNKVFLITRYFNIHMEE 92
           LM AL+  YEK SA+NKV L+ R FN+ M E
Sbjct: 83  LMAALSSMYEKPSASNKVHLMRRLFNLRMTE 113

[Close]

BLAST of Moc11g30630 vs. NCBI nr
Match: BBG97541.1 (disease resistance family protein / LRR family protein [Prunus dulcis])

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-10
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 1   MQITDLLTYKKIHKILKERPTTGISDKEWTKMDEQAVVIIKLCLMMNVASLVPSQKEAMR 60
           MQI D L  KK+++ L E    G++D++WT +D QA+ +I+L L  NVA  +  +K    
Sbjct: 568 MQIEDYLYQKKLYQPLSENKPEGMNDEDWTLLDRQALGVIRLTLSRNVAFNIAKEKTTAG 627

Query: 61  LMKALTDRYEKSSANNKVFLITRYFNIHMEE 92
           LM AL+  YEK SA+NKV L+ R FN+ M E
Sbjct: 628 LMAALSSMYEKPSASNKVHLMRRLFNLRMTE 658

[Close]

BLAST of Moc11g30630 vs. NCBI nr
Match: BBN67857.1 (hypothetical protein Prudu_208S000900 [Prunus dulcis])

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-10
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 1   MQITDLLTYKKIHKILKERPTTGISDKEWTKMDEQAVVIIKLCLMMNVASLVPSQKEAMR 60
           MQI D L  KK+++ L E    G++D++WT +D QA+ +I+L L  NVA  +  +K    
Sbjct: 23  MQIEDYLYQKKLYQPLSENKPEGMNDEDWTLLDRQALGVIRLTLSRNVAFNIAKEKTTAG 82

Query: 61  LMKALTDRYEKSSANNKVFLITRYFNIHMEE 92
           LM AL+  YEK SA+NKV L+ R FN+ M E
Sbjct: 83  LMAALSSMYEKPSASNKVHLMRRLFNLRMTE 113

[Close]

BLAST of Moc11g30630 vs. NCBI nr
Match: BBH01979.1 (hypothetical protein Prudu_012406 [Prunus dulcis] >BBH08932.1 hypothetical protein Prudu_021286 [Prunus dulcis] >BBN68993.1 hypothetical protein Prudu_682S000500 [Prunus dulcis] >BBN69151.1 hypothetical protein Prudu_777S000500 [Prunus dulcis])

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-10
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 1   MQITDLLTYKKIHKILKERPTTGISDKEWTKMDEQAVVIIKLCLMMNVASLVPSQKEAMR 60
           MQI D L  KK+++ L E    G++D++WT +D QA+ +I+L L  NVA  +  +K    
Sbjct: 23  MQIEDYLYQKKLYQPLSENKPEGMNDEDWTLLDRQALGVIRLTLSRNVAFNIAKEKTTAG 82

Query: 61  LMKALTDRYEKSSANNKVFLITRYFNIHMEE 92
           LM AL+  YEK SA+NKV L+ R FN+ M E
Sbjct: 83  LMAALSSMYEKPSASNKVHLMRRLFNLRMTE 113

[Close]

BLAST of Moc11g30630 vs. NCBI nr
Match: BBH05442.1 (hypothetical protein Prudu_016824 [Prunus dulcis])

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-10
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 1   MQITDLLTYKKIHKILKERPTTGISDKEWTKMDEQAVVIIKLCLMMNVASLVPSQKEAMR 60
           MQI D L  KK+++ L E    G++D++WT +D QA+ +I+L L  NVA  +  +K    
Sbjct: 23  MQIEDYLYQKKLYQPLSENKPEGMNDEDWTLLDRQALGVIRLTLSRNVAFNIAKEKTTAG 82

Query: 61  LMKALTDRYEKSSANNKVFLITRYFNIHMEE 92
           LM AL+  YEK SA+NKV L+ R FN+ M E
Sbjct: 83  LMAALSSMYEKPSASNKVHLMRRLFNLRMTE 113

[Close]

BLAST of Moc11g30630 vs. ExPASy TrEMBL
Match: A0A4Y1RCM7 (CCHC-type domain-containing protein OS=Prunus dulcis OX=3755 GN=Prudu_012406 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 8.2e-11
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 1   MQITDLLTYKKIHKILKERPTTGISDKEWTKMDEQAVVIIKLCLMMNVASLVPSQKEAMR 60
           MQI D L  KK+++ L E    G++D++WT +D QA+ +I+L L  NVA  +  +K    
Sbjct: 23  MQIEDYLYQKKLYQPLSENKPEGMNDEDWTLLDRQALGVIRLTLSRNVAFNIAKEKTTAG 82

Query: 61  LMKALTDRYEKSSANNKVFLITRYFNIHMEE 92
           LM AL+  YEK SA+NKV L+ R FN+ M E
Sbjct: 83  LMAALSSMYEKPSASNKVHLMRRLFNLRMTE 113

[Close]

BLAST of Moc11g30630 vs. ExPASy TrEMBL
Match: A0A4Y1RIA8 (F-box/RNI-like superfamily protein (Fragment) OS=Prunus dulcis OX=3755 GN=Prudu_015103 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 8.2e-11
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 1   MQITDLLTYKKIHKILKERPTTGISDKEWTKMDEQAVVIIKLCLMMNVASLVPSQKEAMR 60
           MQI D L  KK+++ L E    G++D++WT +D QA+ +I+L L  NVA  +  +K    
Sbjct: 199 MQIEDYLYQKKLYQPLSENKPEGMNDEDWTLLDRQALGVIRLTLSRNVAFNIAKEKTTAG 258

Query: 61  LMKALTDRYEKSSANNKVFLITRYFNIHMEE 92
           LM AL+  YEK SA+NKV L+ R FN+ M E
Sbjct: 259 LMAALSSMYEKPSASNKVHLMRRLFNLRMTE 289

[Close]

BLAST of Moc11g30630 vs. ExPASy TrEMBL
Match: A0A4Y1R0B6 (Disease resistance family protein / LRR family protein OS=Prunus dulcis OX=3755 GN=Prudu_006709 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 8.2e-11
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 1   MQITDLLTYKKIHKILKERPTTGISDKEWTKMDEQAVVIIKLCLMMNVASLVPSQKEAMR 60
           MQI D L  KK+++ L E    G++D++WT +D QA+ +I+L L  NVA  +  +K    
Sbjct: 568 MQIEDYLYQKKLYQPLSENKPEGMNDEDWTLLDRQALGVIRLTLSRNVAFNIAKEKTTAG 627

Query: 61  LMKALTDRYEKSSANNKVFLITRYFNIHMEE 92
           LM AL+  YEK SA+NKV L+ R FN+ M E
Sbjct: 628 LMAALSSMYEKPSASNKVHLMRRLFNLRMTE 658

[Close]

BLAST of Moc11g30630 vs. ExPASy TrEMBL
Match: A0A4Y1RMK2 (CCHC-type domain-containing protein OS=Prunus dulcis OX=3755 GN=Prudu_016848 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 8.2e-11
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 1   MQITDLLTYKKIHKILKERPTTGISDKEWTKMDEQAVVIIKLCLMMNVASLVPSQKEAMR 60
           MQI D L  KK+++ L E    G++D++WT +D QA+ +I+L L  NVA  +  +K    
Sbjct: 23  MQIEDYLYQKKLYQPLSENKPEGMNDEDWTLLDRQALGVIRLTLSRNVAFNIAKEKTTAG 82

Query: 61  LMKALTDRYEKSSANNKVFLITRYFNIHMEE 92
           LM AL+  YEK SA+NKV L+ R FN+ M E
Sbjct: 83  LMAALSSMYEKPSASNKVHLMRRLFNLRMTE 113

[Close]

BLAST of Moc11g30630 vs. ExPASy TrEMBL
Match: A0A4Y1R3K4 (CCHC-type domain-containing protein OS=Prunus dulcis OX=3755 GN=Prudu_008085 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 8.2e-11
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 1   MQITDLLTYKKIHKILKERPTTGISDKEWTKMDEQAVVIIKLCLMMNVASLVPSQKEAMR 60
           MQI D L  KK+++ L E    G++D++WT +D QA+ +I+L L  NVA  +  +K    
Sbjct: 23  MQIEDYLYQKKLYQPLSENKPEGMNDEDWTLLDRQALGVIRLTLSRNVAFNIAKEKTTAG 82

Query: 61  LMKALTDRYEKSSANNKVFLITRYFNIHMEE 92
           LM AL+  YEK SA+NKV L+ R FN+ M E
Sbjct: 83  LMAALSSMYEKPSASNKVHLMRRLFNLRMTE 113

[Close]

BLAST of Moc11g30630 vs. TAIR 10
Match: AT3G29785.1 (unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 1.0e-05
Identity = 29/78 (37.18%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 1  MQITDLLTYKKIHKILKERPTTGISDKEWTKMDEQAVVIIKLCLMMNVASLVPSQKEAMR 60
          M+I D L  KK+H+ L ++  T +S  +W  +  Q + +I+L +  N+A  V  +K    
Sbjct: 19 MKIEDYLYGKKLHQPLGKKVET-MSQDDWNILYRQVLDVIRLTISKNIAHNVAKEKSPDG 78

Query: 61 LMKALTDRYEKSSANNKV 79
          LMK L+D Y+K S NN V
Sbjct: 79 LMKVLSDIYKKPSTNNTV 95

The following BLAST results are available for this feature:

BLAST of Moc11g30630 vs. NCBI nr


Match Name	E-value	Identity	Description
BBH05460.1	1.7e-10	45.05	hypothetical protein Prudu_016848 [Prunus dulcis]	[more]
BBG97541.1	1.7e-10	45.05	disease resistance family protein / LRR family protein [Prunus dulcis]	[more]
BBN67857.1	1.7e-10	45.05	hypothetical protein Prudu_208S000900 [Prunus dulcis]	[more]
BBH01979.1	1.7e-10	45.05	hypothetical protein Prudu_012406 [Prunus dulcis] >BBH08932.1 hypothetical prote...	[more]
BBH05442.1	1.7e-10	45.05	hypothetical protein Prudu_016824 [Prunus dulcis]	[more]

BLAST of Moc11g30630 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g30630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Y1RCM7	8.2e-11	45.05	CCHC-type domain-containing protein OS=Prunus dulcis OX=3755 GN=Prudu_012406 PE=...	[more]
A0A4Y1RIA8	8.2e-11	45.05	F-box/RNI-like superfamily protein (Fragment) OS=Prunus dulcis OX=3755 GN=Prudu_...	[more]
A0A4Y1R0B6	8.2e-11	45.05	Disease resistance family protein / LRR family protein OS=Prunus dulcis OX=3755 ...	[more]
A0A4Y1RMK2	8.2e-11	45.05	CCHC-type domain-containing protein OS=Prunus dulcis OX=3755 GN=Prudu_016848 PE=...	[more]
A0A4Y1R3K4	8.2e-11	45.05	CCHC-type domain-containing protein OS=Prunus dulcis OX=3755 GN=Prudu_008085 PE=...	[more]

BLAST of Moc11g30630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29785.1	1.0e-05	37.18	unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 29..93 e-value: 8.3E-8 score: 32.1
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 1..92
None	No IPR available	PANTHER	PTHR34676:SF1	ZINC FINGER, CCHC-TYPE, TUBBY C-TERMINAL-LIKE DOMAIN PROTEIN-RELATED	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g30630.1	Moc11g30630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding