Moc11g30560 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g30560
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr11: 22331043 .. 22331729 (+)
RNA-Seq Expression	Moc11g30560
Synteny	Moc11g30560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGTAGCATTGGAGATATGTTGTGTTTTTACTGCCACAAGAAGGAACACATGAAGAGGTTTTGCAGGAAGCTTAAAGAGGATCAACATAAGGGAGATTCTACTAATGTTGTAGAAAGGATAGAAAAGTTTCTAGTCTGTGTTAAGAATGAGTCAGTAGATCGACCATTAAAGTGGGATGTGGACACTACAACATCAGCACATGTATCTTCAGACAATAAGTGGATCTCATCTTTCACTAGTCACCATGGTGAAGTAAGGATGAACAATAAAAGTGCCTCCAAGGTAAGAGGAATTGGGGATGTCTGTTTGAAGACCGATGGGAGAAAATAGTTGGTGTTGCGAGCTGTCAAGTATGTCCAAGTTTCAGAAAGAATTTGTTATCTGTTGGAAAATTGGATGACGATGGTTTCAGGAGTGAGTTTGCAGAGGATAGCTGGAACCTTCTAAGGGAATTCGAGGTAGTGGCATGCAATGAACCACAAAGAAGCCTTTGTTTATGTGCCTAGATTTGGAGTTGCTAAGGGATCTGAGAGACAGATGATGCATAGGGCTGTAGATGGTTTAGGGCGAGACTTGAAAGAATCATCTACATTTACAACTAGGACAGGAGATAAGAATCTGTCATCAGTTCAAGTACAACAACTGGGAAGTAAAGGAAAGGGAAGGGGAACAATTCAGTGA

mRNA sequence

ATGAGTAGTAGCATTGGAGATATGTTGTGTTTTTACTGCCACAAGAAGGAACACATGAAGAGGTTTTGCAGGAAGCTTAAAGAGGATCAACATAAGGGAGATTCTACTAATGTTGTAGAAAGGATAGAAAAGTTTCTAGTCTGTGTTAAGAATGAGTCAGTAGATCGACCATTAAAGTGGGATGTGGACACTACAACATCAGCACATGTATCTTCAGACAATAAGTGGATCTCATCTTTCACTAGTCACCATGGTGAAGTAAGGATGAACAATAAAAGTGCCTCCAAGTGGCATGCAATGAACCACAAAGAAGCCTTTGTTTATGTGCCTAGATTTGGAGTTGCTAAGGGATCTGAGAGACAGATGATGCATAGGGCTGTAGATGGTTTAGGGCGAGACTTGAAAGAATCATCTACATTTACAACTAGGACAGGAGATAAGAATCTGTCATCAGTTCAAGTACAACAACTGGGAAGTAAAGGAAAGGGAAGGGGAACAATTCAGTGA

Coding sequence (CDS)

ATGAGTAGTAGCATTGGAGATATGTTGTGTTTTTACTGCCACAAGAAGGAACACATGAAGAGGTTTTGCAGGAAGCTTAAAGAGGATCAACATAAGGGAGATTCTACTAATGTTGTAGAAAGGATAGAAAAGTTTCTAGTCTGTGTTAAGAATGAGTCAGTAGATCGACCATTAAAGTGGGATGTGGACACTACAACATCAGCACATGTATCTTCAGACAATAAGTGGATCTCATCTTTCACTAGTCACCATGGTGAAGTAAGGATGAACAATAAAAGTGCCTCCAAGTGGCATGCAATGAACCACAAAGAAGCCTTTGTTTATGTGCCTAGATTTGGAGTTGCTAAGGGATCTGAGAGACAGATGATGCATAGGGCTGTAGATGGTTTAGGGCGAGACTTGAAAGAATCATCTACATTTACAACTAGGACAGGAGATAAGAATCTGTCATCAGTTCAAGTACAACAACTGGGAAGTAAAGGAAAGGGAAGGGGAACAATTCAGTGA

Protein sequence

MSSSIGDMLCFYCHKKEHMKRFCRKLKEDQHKGDSTNVVERIEKFLVCVKNESVDRPLKWDVDTTTSAHVSSDNKWISSFTSHHGEVRMNNKSASKWHAMNHKEAFVYVPRFGVAKGSERQMMHRAVDGLGRDLKESSTFTTRTGDKNLSSVQVQQLGSKGKGRGTIQ

Homology

[Close]

BLAST of Moc11g30560 vs. NCBI nr
Match: RVW94144.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-04
Identity = 41/112 (36.61%), Postives = 57/112 (50.89%), Query Frame = 0


Query: 2   SSSIG--DMLCFYCHKKEHMKRFCRKL--------KEDQHKGDSTNVVERIEKFLV--CV 61
           SSSI   D+ C+YCHKK HMKR CRKL        K  + K + T VV   E  ++   V
Sbjct: 171 SSSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNSEKKQNDTAVVTDGELMIIRDDV 230

Query: 62  KNESVDRPLKWDVDTTTSAHVSSDNKWISSFT-SHHGEVRMNNKSASKWHAM 101
               + +   W +D+  S HV+S   + +S++    G VRM N+  SK   M
Sbjct: 231 SVNLIGQETDWVIDSGASFHVTSRADFFTSYSQGDFGNVRMGNEDVSKIFGM 282

[Close]

BLAST of Moc11g30560 vs. NCBI nr
Match: KAA0047570.1 (putative retrotransposon [Cucumis melo var. makuwa] >TYK14964.1 putative retrotransposon [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-04
Identity = 33/109 (30.28%), Postives = 57/109 (52.29%), Query Frame = 0


Query: 2   SSSIGDMLCFYCHKKEHMKRFCRKLKED--QHKG---------DSTNVVERIEKFLVCVK 61
           S    ++ C YCH+K H+K++CRKLK D   HKG         D+  ++   E F +   
Sbjct: 89  SDRFANVECHYCHEKGHIKKYCRKLKRDSKNHKGKEKKNDDESDTDTIIVATENFYILSN 148

Query: 62  NESVDRPLK---WDVDTTTSAHVSSDNKWISSFT-SHHGEVRMNNKSAS 96
            + V+  ++   W +D+  S + +S  ++ +S+T S  G VRM N  ++
Sbjct: 149 GDVVNLAIQQSSWVIDSGASVNATSKGQFFASYTPSDFGSVRMGNDGSA 197

[Close]

BLAST of Moc11g30560 vs. NCBI nr
Match: RVW84195.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-04
Identity = 40/108 (37.04%), Postives = 56/108 (51.85%), Query Frame = 0


Query: 2   SSSIG--DMLCFYCHKKEHMKRFCRKL--------KEDQHKGDSTNVVERIEKFLV--CV 61
           SSSI   D+ C+YCHKK HMKR CRKL        K  + K + T VV   E  ++   V
Sbjct: 201 SSSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNSEKKQNDTAVVTDGELMIIRDDV 260

Query: 62  KNESVDRPLKWDVDTTTSAHVSSDNKWISSFT-SHHGEVRMNNKSASK 97
               + +   W +D+  S HV+S   + +S++    G VRM N+  SK
Sbjct: 261 SVNLIGQETDWVIDSGASFHVTSRADFFTSYSQGDFGNVRMGNEDVSK 308

[Close]

BLAST of Moc11g30560 vs. NCBI nr
Match: RVW14266.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-04
Identity = 40/108 (37.04%), Postives = 56/108 (51.85%), Query Frame = 0


Query: 2   SSSIG--DMLCFYCHKKEHMKRFCRKL--------KEDQHKGDSTNVVERIEKFLV--CV 61
           SSSI   D+ C+YCHKK HMKR CRKL        K  + K + T VV   E  ++   V
Sbjct: 437 SSSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNSEKKQNDTAVVTDGELMIIRDDV 496

Query: 62  KNESVDRPLKWDVDTTTSAHVSSDNKWISSFT-SHHGEVRMNNKSASK 97
               + +   W +D+  S HV+S   + +S++    G VRM N+  SK
Sbjct: 497 SVNLIGQETDWVIDSGASFHVTSRADFFTSYSQGDFGNVRMGNEDVSK 544

[Close]

BLAST of Moc11g30560 vs. NCBI nr
Match: VVB04180.1 (unnamed protein product [Arabis nemorensis])

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-04
Identity = 31/106 (29.25%), Postives = 58/106 (54.72%), Query Frame = 0


Query: 2   SSSIGDMLCFYCHKKEHMKRFCRKLKEDQHKG-------DSTNVVERIEKFLVCVKNESV 61
           S+   ++ C YCH K+HMK+ C KLK+D   G       D   V E  ++FL+ ++++++
Sbjct: 25  SNKFANLECHYCHNKDHMKKDCWKLKKDSKLGKKQEDGEDRVTVTE--DQFLIILESDAI 84

Query: 62  D---RPLKWDVDTTTSAHVSSDNKWISSFT-SHHGEVRMNNKSASK 97
           +       W VD+  + H +S   + +++T   +G V+M N + +K
Sbjct: 85  NIACHDTSWVVDSGATTHATSQRDFFTTYTPGSYGSVKMGNDAVAK 128

[Close]

BLAST of Moc11g30560 vs. ExPASy TrEMBL
Match: A0A5D3CVK2 (Putative retrotransposon OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2754G00140 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 33/109 (30.28%), Postives = 57/109 (52.29%), Query Frame = 0


Query: 2   SSSIGDMLCFYCHKKEHMKRFCRKLKED--QHKG---------DSTNVVERIEKFLVCVK 61
           S    ++ C YCH+K H+K++CRKLK D   HKG         D+  ++   E F +   
Sbjct: 89  SDRFANVECHYCHEKGHIKKYCRKLKRDSKNHKGKEKKNDDESDTDTIIVATENFYILSN 148

Query: 62  NESVDRPLK---WDVDTTTSAHVSSDNKWISSFT-SHHGEVRMNNKSAS 96
            + V+  ++   W +D+  S + +S  ++ +S+T S  G VRM N  ++
Sbjct: 149 GDVVNLAIQQSSWVIDSGASVNATSKGQFFASYTPSDFGSVRMGNDGSA 197

[Close]

BLAST of Moc11g30560 vs. ExPASy TrEMBL
Match: A0A438IBT7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_788 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 41/112 (36.61%), Postives = 57/112 (50.89%), Query Frame = 0


Query: 2   SSSIG--DMLCFYCHKKEHMKRFCRKL--------KEDQHKGDSTNVVERIEKFLV--CV 61
           SSSI   D+ C+YCHKK HMKR CRKL        K  + K + T VV   E  ++   V
Sbjct: 171 SSSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNSEKKQNDTAVVTDGELMIIRDDV 230

Query: 62  KNESVDRPLKWDVDTTTSAHVSSDNKWISSFT-SHHGEVRMNNKSASKWHAM 101
               + +   W +D+  S HV+S   + +S++    G VRM N+  SK   M
Sbjct: 231 SVNLIGQETDWVIDSGASFHVTSRADFFTSYSQGDFGNVRMGNEDVSKIFGM 282

[Close]

BLAST of Moc11g30560 vs. ExPASy TrEMBL
Match: A0A438BTH6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4171 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 40/108 (37.04%), Postives = 56/108 (51.85%), Query Frame = 0


Query: 2   SSSIG--DMLCFYCHKKEHMKRFCRKL--------KEDQHKGDSTNVVERIEKFLV--CV 61
           SSSI   D+ C+YCHKK HMKR CRKL        K  + K + T VV   E  ++   V
Sbjct: 437 SSSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNSEKKQNDTAVVTDGELMIIRDDV 496

Query: 62  KNESVDRPLKWDVDTTTSAHVSSDNKWISSFT-SHHGEVRMNNKSASK 97
               + +   W +D+  S HV+S   + +S++    G VRM N+  SK
Sbjct: 497 SVNLIGQETDWVIDSGASFHVTSRADFFTSYSQGDFGNVRMGNEDVSK 544

[Close]

BLAST of Moc11g30560 vs. ExPASy TrEMBL
Match: A0A438HI91 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1199 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 40/108 (37.04%), Postives = 56/108 (51.85%), Query Frame = 0


Query: 2   SSSIG--DMLCFYCHKKEHMKRFCRKL--------KEDQHKGDSTNVVERIEKFLV--CV 61
           SSSI   D+ C+YCHKK HMKR CRKL        K  + K + T VV   E  ++   V
Sbjct: 201 SSSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNSEKKQNDTAVVTDGELMIIRDDV 260

Query: 62  KNESVDRPLKWDVDTTTSAHVSSDNKWISSFT-SHHGEVRMNNKSASK 97
               + +   W +D+  S HV+S   + +S++    G VRM N+  SK
Sbjct: 261 SVNLIGQETDWVIDSGASFHVTSRADFFTSYSQGDFGNVRMGNEDVSK 308

[Close]

BLAST of Moc11g30560 vs. ExPASy TrEMBL
Match: A0A438E432 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_810 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 40/108 (37.04%), Postives = 56/108 (51.85%), Query Frame = 0


Query: 2   SSSIG--DMLCFYCHKKEHMKRFCRKL--------KEDQHKGDSTNVVERIEKFLV--CV 61
           SSSI   D+ C+YCHKK HMKR CRKL        K  + K + T VV   E  ++   V
Sbjct: 90  SSSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNSEKKQNDTAVVTDGELMIIRDDV 149

Query: 62  KNESVDRPLKWDVDTTTSAHVSSDNKWISSFT-SHHGEVRMNNKSASK 97
               + +   W +D+  S HV+S   + +S++    G VRM N+  SK
Sbjct: 150 SVNLIGQETDWVIDSGASFHVTSRADFFTSYSQGDFGNVRMGNEDVSK 197

The following BLAST results are available for this feature:

BLAST of Moc11g30560 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW94144.1	2.4e-04	36.61	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
KAA0047570.1	2.4e-04	30.28	putative retrotransposon [Cucumis melo var. makuwa] >TYK14964.1 putative retrotr...	[more]
RVW84195.1	3.1e-04	37.04	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW14266.1	3.1e-04	37.04	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
VVB04180.1	3.1e-04	29.25	unnamed protein product [Arabis nemorensis]	[more]

BLAST of Moc11g30560 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g30560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CVK2	1.1e-04	30.28	Putative retrotransposon OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A438IBT7	1.1e-04	36.61	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438BTH6	1.5e-04	37.04	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438HI91	1.5e-04	37.04	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438E432	1.5e-04	37.04	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of Moc11g30560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..168
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 4..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g30560.1	Moc11g30560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding