Moc11g30470 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g30470
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr11: 22283909 .. 22288404 (+)
RNA-Seq Expression	Moc11g30470
Synteny	Moc11g30470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATATCAAAAATCACAGAACACAAGTTGAATAGATCAAACTATTCTTCATGGAAAATCAGTGTTCGTCTTTTTTTGCGAAGTATTGATATGGACGATCACATAACTGAGGATCCGCCTAAGGATGAGAGCAAGAAAGCTTGGTTGCGGGATGATGCTCGATTGGTTCTGCAGATCAAGAATTCAATCGAGGGTGACATTATTGGCTTGGTCAATGAATGCAAGTATGTGAAAGAGTTGCTTAAATATTTAGAATTCCTTTATTTTGGAAAAGGAAATGTTAGTCGAATATTTGAAATCTGCAAGCGCTTCTACCAACCTGAGTTTGATGACCAATCTCTTACAAATTACTTTATGGAACACAAACGAATTTATGCAGAATTTAATGCATTACTCCCAGATAGTAATGATGCAAAAGTTCGGCTTGCCCAACGCGAACAACGAGCAGTTATCAGTTTTCTTCTTGGTCTTCTACTTAGATTTGATGTGGCCAAAGATCAATTACTCTCTGGTTCGGAAATTCCAGCTTTAGAGGAGGCATACACTCGAGTACTTCGAGTTGAGAAGTCACAACCCATCTTGTCATCTCAGTCAAACAGAGGTAATACCTACCAAGGGAATTCCACGACTTCAAACGCTCAACGTTCTAGTGCTCCAAAATCAAATTCAGGAGATATTATTTTTTGCAATTATTGCCATAAGCCTGGTCATACAAAACGAGAATGTAGAAAGCTATTGAATAAAGGTCAGAAAACACAGTCTGCCCATGTTGCATCTACTCCTGATAATGCTGGCAAGTTAGTTACAATTCCTGCGGAAGAATTTGCTAAGTTCCAACAGTATCAAGAGTCATTGACGGCATCGTGCTCTAATCCGATTACCGTCATCGCTGAGTCAGGTAACACCAGTAAATGTCTTATTTCCTCCACATCAAAATGGGTCATTGACTCTGGTGATAATGGTCAGAAAACACAGTCTGCCTATGTTGCATCTACTCCTGATAATGCTGGCAAGTTAGTTACAATTCCTGCGGAAGAATTTTCTAAGTTCCAACAGTATCAAGAGTCATTGACGGCATCGTCCTCTAATCCGATTACCGCCATCACTGAGTCAGGTAACACCAGTAAATGTCTTATTTCCTCCACATCAAAATGGGTCATTGACTCTGGTGCGACCAATTATATGTCAGGTAATCCTAACTTATTTGCTAATTTCTCCCCATCTGTATCTTTGCCTGATGTTACCATAGCAAATGACACAACTTCTCCTGTTCTTGGCTCTGGCACAGTTCATCTTTCTACATCCCTTTCACTGACATCTGTTTTAAATTTATCACAATTTTCTTTTAATTTGATCTCTGTTAGTAAACTCACTTGTGATCTCAATTGTTGTGTTTTATTCTTCCCTGGTTATTACCTATTTCAGGATCTTACGACGAAGAAGACTATTGGTAAAGGGCGTGAATCCAATGACCTCTACACATTTGATACACAAATACCTACAGCCACTGTTTGCACGCGAGTGCCAACTCCTTTCGAAGAACATTGTCGTTTGGGTCATCCATCTCTCTCCATGTTAAAGAGTCTTCGTCCTCAATTTCATAGTTTGCATTCTTTAAATTGTGAGTCATGTCAATTTGCTAAGTTTCATCATCTTAGTTTGTATCCTAGAATCAATAAACGAGCTACTACCTTTTTTGAATTAGTTCATTTTGATGTTTGGGGTCCGTGTCCTATTGAGTCCAAAAGTGGGTTTCGGTACTTCGTTACCTTTGTCGATGATTTTTCCCGTGTAACTTGGTTATATTTAATGAATCATCGTTCTGAGTTATTTTCTCATTTTCGTAACTTTCATGCTAAAATTCGAACTCAATTTTGTGGCTCTCTTAAATTTCTACGAAGTGATAATGCTAAAGAATATTTTTCTGGAGCTCTTGGCTCTTATTTGAGTGAATACGGTATTCTTCACCAATCCTCTTGTGTCGATACTCCGTCCAAAAATGGAGTTGCAAAAAGAAAAAATAGACATCTTCTCGAAACAGCAAGGGCCTTAATGTTTCAAATGCATGTTCCAAAATATTTTTGGGCCGATGTTATTTCGACGGCTTGCTTCCTGATTAATCGCATGCCTTCATCAGTTCTTAAGGGTGAGATACCTTATCGTACTCTATGTCCTATGCAACCTTTATTTCCTATTAAACCTAAAATATTTGGTTGCACCTGTTTTATTCGTGATGTTCGCCCTCAGCCCACCAAATTGGATTCCAAATCCTTGAAATGCATTTTTGTTGGTTATTCTCGTGTTCAAAAAGGGTATCGATGTTATTGTCCTGATCTCAATAGATATCTTGTCTCTCCCGACGTTACATTCTTTGAAAATACTCCTTTTTCATCATCTTTGAGTACCAGTCAGGGGGAGAGTTCACAAGAAGATGATGACTTTCTTGTATATTTCATTGTCTCTCCTCCTTACTAATCTCCTATACTTTTCAGGATCTTTCAACAACTCCCCTTCTTTTGTAAGTTGTAAATTAGGTATCATTGGGGTACTACGCGGCTTAGCAGCTAACTTTCCTGTTTCAGTTAACAGGTCAAGTACATATTTCCTCTGTGATAAGAGAATCCCCTTCTTGCTCCTTATTACCTCAATTCCTAAGAAATATTTCAACACTCCCAAATCCTACGTATGAAATTGACTATGAAGGAAAATTTTGAGTGATAGGATGCCTGATGAATCATTACCAATAATCACAATATCATCAACATATACAACCAGTAAGATAACACCAGACTCAGTTTGTTTATAGAAGACAGAATGGTCCGACTTACTCTTCTTCATTCCAAAGTTCTCAACCACCTGACTGAATTTTCCAAACCATGCTCGTGGACTTTGTTTCAACCTATATAAGGATTTACGAAGACGACATATCTTTCCATTCTCCCCCTGAGCAACAAAACCTGGTGGTTGCTCCATATACACTTCCTCTTGAAGATCACCATGGAGGAAGGCATTTTTAATATCAAGCTGATGTAACGGTCAATGGTGAATAGATGCCAATGAAATGAATAACCTAACAAAAGTCAATTTAGCAACCGGAGAAAAAGTATCACTATAATCAATTCCATAAGTCTGCGCATATCCTTTAGCAACAAGGAGAGCTTTCAAACGGGCAATGGATCCATCAGGATGAACTTTAACCGCAAACACCCATTTACAACCGATAGTTTTTTTTTCTACAGGAAGAGACACTAAATCCCAAGTACCATTGTCATCTAAGGCAGTCATTTCCTCCAACATAGCAGCCCGCCAACCAGAATGAGACAAAGCTTCATGAACAGTTTTAGGAACAGATACAGACTTAAGGGATGCAAGAAACGAACAAGTAGGTGAGGACAAATGGTTATATGAGACAAAAGAAGAAACATGATAAGTACATTTACGCTTACCTTTTCGAAGAGCAATTGGAAGGTCATCACTTGTTCCTGGATCATCGGACGAAGAAGCTGCTGGTATAGGGCATGAGTCCGTAGGAGGTTGCTGACGAGAATAAACTTGAGTAATGGTGGAAAGAGAAGGATTAGGCACATAGGAAGATGTATTGCTAGGAAGCTTTTCAGTAGCTGAATTATCTTACGGTTACGAGGTCAGATTGCATCTAATCCAGTATTTCATGAACGAACCAAACACATTGAAGTTGATTGTCATTATGTACGTGAGAAAATACAGCAAGGGTTGGTGGCTACAGGGTATGTGAAGACTGGAGAGCAGCTAGGAGATATCTTTACTAAAACATTGAATGGAGCACGAATAGATTATTTGTCTAACAATTTGGGCATGATTAACATATATGCACCAACTTGAGGGGGAGTGTTAGATTATATATTAGTATATTTTATATTCTTCTATTAATATTAATTTGTCATTTACCTTCTCCTTATAGAATTAGGTCAACCTTGTATATTTGTCTATATATATACACTTTAATAATGAGAATAGATAACATTGGATTTTCTCCAACCTTAGTCTCTACAGACTTCATCTCCAACCGAAGGGTTTCCAACCGTTTCTCAAAATCATCCATACGATCATTTGACGGTCCACCAAATACGTCCTCATGCAATCAACCTCATCCATCTGGCCTAGGGACTGATTCAGATCCTCTCAACGTTGGCCCAAGACTCTCTCGGGTCCTTATTGGTTCGATGGGATCAACCGTCGTTCCAACTTCTTCCACCGTCCTTGAAGTGGGTCTTATGGGTTGTCGACTGGACCCGCTAGTATTGAAGTCATTTGAGTGTACGACAACAACTCAGTTAACTCGGCATCATTAATATAACCTACACAGTCGTGCAACTCAGTAGTTCCAACCCCATCGGTGCGAAGCAGCTAAGGCTGCACCACAGCTACCAGTCTTAGCTGCGAAGGTCGACTCTCGATACAACCTCTTTACATCAGACTCTACTAGAGGATGGATGACAACCAATTGCACGTGTTGA

mRNA sequence

ATGATATCAAAAATCACAGAACACAAGTTGAATAGATCAAACTATTCTTCATGGAAAATCAGTGTTCGTCTTTTTTTGCGAAGTATTGATATGGACGATCACATAACTGAGGATCCGCCTAAGGATGAGAGCAAGAAAGCTTGGTTGCGGGATGATGCTCGATTGGTTCTGCAGATCAAGAATTCAATCGAGGGTGACATTATTGGCTTGGTCAATGAATGCAAGTATGTGAAAGAGTTGCTTAAATATTTAGAATTCCTTTATTTTGGAAAAGGAAATGTTAGTCGAATATTTGAAATCTGCAAGCGCTTCTACCAACCTGAGTTTGATGACCAATCTCTTACAAATTACTTTATGGAACACAAACGAATTTATGCAGAATTTAATGCATTACTCCCAGATAGTAATGATGCAAAAGTTCGGCTTGCCCAACGCGAACAACGAGCAGTTATCAGTTTTCTTCTTGGTCTTCTACTTAGATTTGATGTGGCCAAAGATCAATTACTCTCTGGTTCGGAAATTCCAGCTTTAGAGGAGGCATACACTCGAGTACTTCGAGTTGAGAAGTCACAACCCATCTTGTCATCTCAGTCAAACAGAGGTAATACCTACCAAGGGAATTCCACGACTTCAAACGCTCAACGTTCTAGTGCTCCAAAATCAAATTCAGGAGATATTATTTTTTGCAATTATTGCCATAAGCCTGGTCATACAAAACGAGAATGTAGAAAGCTATTGAATAAAGGTCAGAAAACACAGTCTGCCCATGTTGCATCTACTCCTGATAATGCTGGCAAGTTAGTTACAATTCCTGCGGAAGAATTTGCTAAGTTCCAACAGTATCAAGAGTCATTGACGGCATCGTGCTCTAATCCGATTACCGTCATCGCTGAGTCAGGTAACACCAGTAAATGTCTTATTTCCTCCACATCAAAATGGGTCATTGACTCTGGTGATAATGGTCAGAAAACACAGTCTGCCTATGTTGCATCTACTCCTGATAATGCTGGCAAGTTAGTTACAATTCCTGCGGAAGAATTTTCTAAGTTCCAACAGTATCAAGAGTCATTGACGGCATCGTCCTCTAATCCGATTACCGCCATCACTGAGTCAGACTTCATCTCCAACCGAAGGGTTTCCAACCGTTTCTCAAAATCATCCATACGATCATTTGACGGTCCACCAAATACGTCCTCATGCAATCAACCTCATCCATCTGGCCTAGGGACTGATTCAGATCCTCTCAACGTTGGCCCAAGACTCTCTCGGGTCCTTATTGGTTCGATGGGATCAACCGTCGTTCCAACTTCTTCCACCGTCCTTGAAGTGGGTCTTATGGGTTGTCGACTGGACCCGCTAGTATTGAAGTCATTTGAGTCTAAGGCTGCACCACAGCTACCAGTCTTAGCTGCGAAGGTCGACTCTCGATACAACCTCTTTACATCAGACTCTACTAGAGGATGGATGACAACCAATTGCACGTGTTGA

Coding sequence (CDS)

ATGATATCAAAAATCACAGAACACAAGTTGAATAGATCAAACTATTCTTCATGGAAAATCAGTGTTCGTCTTTTTTTGCGAAGTATTGATATGGACGATCACATAACTGAGGATCCGCCTAAGGATGAGAGCAAGAAAGCTTGGTTGCGGGATGATGCTCGATTGGTTCTGCAGATCAAGAATTCAATCGAGGGTGACATTATTGGCTTGGTCAATGAATGCAAGTATGTGAAAGAGTTGCTTAAATATTTAGAATTCCTTTATTTTGGAAAAGGAAATGTTAGTCGAATATTTGAAATCTGCAAGCGCTTCTACCAACCTGAGTTTGATGACCAATCTCTTACAAATTACTTTATGGAACACAAACGAATTTATGCAGAATTTAATGCATTACTCCCAGATAGTAATGATGCAAAAGTTCGGCTTGCCCAACGCGAACAACGAGCAGTTATCAGTTTTCTTCTTGGTCTTCTACTTAGATTTGATGTGGCCAAAGATCAATTACTCTCTGGTTCGGAAATTCCAGCTTTAGAGGAGGCATACACTCGAGTACTTCGAGTTGAGAAGTCACAACCCATCTTGTCATCTCAGTCAAACAGAGGTAATACCTACCAAGGGAATTCCACGACTTCAAACGCTCAACGTTCTAGTGCTCCAAAATCAAATTCAGGAGATATTATTTTTTGCAATTATTGCCATAAGCCTGGTCATACAAAACGAGAATGTAGAAAGCTATTGAATAAAGGTCAGAAAACACAGTCTGCCCATGTTGCATCTACTCCTGATAATGCTGGCAAGTTAGTTACAATTCCTGCGGAAGAATTTGCTAAGTTCCAACAGTATCAAGAGTCATTGACGGCATCGTGCTCTAATCCGATTACCGTCATCGCTGAGTCAGGTAACACCAGTAAATGTCTTATTTCCTCCACATCAAAATGGGTCATTGACTCTGGTGATAATGGTCAGAAAACACAGTCTGCCTATGTTGCATCTACTCCTGATAATGCTGGCAAGTTAGTTACAATTCCTGCGGAAGAATTTTCTAAGTTCCAACAGTATCAAGAGTCATTGACGGCATCGTCCTCTAATCCGATTACCGCCATCACTGAGTCAGACTTCATCTCCAACCGAAGGGTTTCCAACCGTTTCTCAAAATCATCCATACGATCATTTGACGGTCCACCAAATACGTCCTCATGCAATCAACCTCATCCATCTGGCCTAGGGACTGATTCAGATCCTCTCAACGTTGGCCCAAGACTCTCTCGGGTCCTTATTGGTTCGATGGGATCAACCGTCGTTCCAACTTCTTCCACCGTCCTTGAAGTGGGTCTTATGGGTTGTCGACTGGACCCGCTAGTATTGAAGTCATTTGAGTCTAAGGCTGCACCACAGCTACCAGTCTTAGCTGCGAAGGTCGACTCTCGATACAACCTCTTTACATCAGACTCTACTAGAGGATGGATGACAACCAATTGCACGTGTTGA

Protein sequence

MISKITEHKLNRSNYSSWKISVRLFLRSIDMDDHITEDPPKDESKKAWLRDDARLVLQIKNSIEGDIIGLVNECKYVKELLKYLEFLYFGKGNVSRIFEICKRFYQPEFDDQSLTNYFMEHKRIYAEFNALLPDSNDAKVRLAQREQRAVISFLLGLLLRFDVAKDQLLSGSEIPALEEAYTRVLRVEKSQPILSSQSNRGNTYQGNSTTSNAQRSSAPKSNSGDIIFCNYCHKPGHTKRECRKLLNKGQKTQSAHVASTPDNAGKLVTIPAEEFAKFQQYQESLTASCSNPITVIAESGNTSKCLISSTSKWVIDSGDNGQKTQSAYVASTPDNAGKLVTIPAEEFSKFQQYQESLTASSSNPITAITESDFISNRRVSNRFSKSSIRSFDGPPNTSSCNQPHPSGLGTDSDPLNVGPRLSRVLIGSMGSTVVPTSSTVLEVGLMGCRLDPLVLKSFESKAAPQLPVLAAKVDSRYNLFTSDSTRGWMTTNCTC

Homology

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BLAST of Moc11g30470 vs. NCBI nr
Match: XP_022850817.1 (uncharacterized protein LOC111372670 [Olea europaea var. sylvestris])

HSP 1 Score: 323.6 bits (828), Expect = 3.1e-84
Identity = 167/332 (50.30%), Postives = 227/332 (68.37%), Query Frame = 0


Query: 1   MISKITEHKLNRSNYSSWKISVRLFLRSIDMDDHITEDPPKDESKKAWLRDDARLVLQIK 60
           ++SKI EHKLN +NY  W  ++R++LRSID DDH+ +DPPKD++K++WLR+DA+L LQI+
Sbjct: 15  VMSKIAEHKLNSTNYLEWSKTIRIYLRSIDKDDHLNKDPPKDDTKQSWLREDAKLFLQIR 74

Query: 61  NSIEGDIIGLVNECKYVKELLKYLEFLYFGKGNVSRIFEICKRFYQPEFDDQSLTNYFME 120
           NSI+ ++IGL+N C++VKEL+ YLEFLY  KGNVSRI+E+C+ FY+ E + +SLT +FM+
Sbjct: 75  NSIDSEVIGLINHCEFVKELMDYLEFLYSDKGNVSRIYEVCRAFYRAEKETKSLTTHFMD 134

Query: 121 HKRIYAEFNALLPDSNDAKVRLAQREQRAVISFLLGLLLRFDVAKDQLLSGSEIPALEEA 180
            KR Y E N LLP S D KV+  QREQ AV+SFL GL   F+ +K Q+LS SEIP L++ 
Sbjct: 135 FKRTYEELNILLPFSTDVKVQQIQREQMAVMSFLAGLPSEFETSKSQILSSSEIPPLQDV 194

Query: 181 YTRVLRVEKSQPILSSQ----SNRGNTYQGNSTTSNAQRSSAPKSN-SGDIIFCNYCHKP 240
           ++RVLR E + PI  +        GN Y         +  +    N     + C Y H+P
Sbjct: 195 FSRVLRTENTSPIQQNNVLVTKGGGNYYARRPNNRGRENKNTDNRNYDSSSVVCYYGHEP 254

Query: 241 GHTKRECRKLLNKGQKTQSAHVASTPDNA-GKLVTIPAEEFAKFQQYQESLTASCSNPIT 300
           GHTK  CRKL N+ ++TQ+A+VA+TP ++  K V I  +E+AKF QYQESL    S P+T
Sbjct: 255 GHTKPYCRKLQNRNKRTQTANVAATPSSSFEKTVMISGDEYAKFSQYQESLKE--SPPVT 314

Query: 301 VIAESGNTSKCLISSTSKWVIDSGDNGQKTQS 327
            +AES  T  CLISS+ KWV+DSG     T S
Sbjct: 315 ALAESSKT--CLISSSKKWVVDSGATDDMTGS 342

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BLAST of Moc11g30470 vs. NCBI nr
Match: XP_031744753.1 (uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus])

HSP 1 Score: 322.0 bits (824), Expect = 8.9e-84
Identity = 179/337 (53.12%), Postives = 231/337 (68.55%), Query Frame = 0


Query: 1   MISKITEHKLNRSNYSSWKISVRLFLRSIDMDDHITEDPPKD-ESKKAWLRDDARLVLQI 60
           + SKITEHKLN SNY  W+ ++  +LRS DMDDH+TEDPPKD + KK WLRDDARL LQI
Sbjct: 15  LASKITEHKLNGSNYYDWRRTILFYLRSTDMDDHMTEDPPKDAKQKKDWLRDDARLYLQI 74

Query: 61  KNSIEGDIIGLVNECKYVKELLKYLEFLYFGKGNVSRIFEICKRFYQPEFDDQSLTNYFM 120
           KNSIE +IIGLV+ C+ VKELL++L+FLY GK  V R+FE+C +F++ E   +S+T+YFM
Sbjct: 75  KNSIESEIIGLVDHCESVKELLEFLDFLYSGKEQVHRMFEVCMQFFRAEQKAESVTSYFM 134

Query: 121 EHKRIYAEFNALLPDSNDAKVRLAQREQRAVISFLLGLLLRFDVAKDQLLSGSEIPALEE 180
             K+I AE   LLP S D KV+  QRE+ AV+ FL GLL  F +AK Q+LS S+IP+L++
Sbjct: 135 RLKKIIAELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDD 194

Query: 181 AYTRVLRVEKSQPILSSQSNRGNTYQGNSTTSNAQRSSAPKSNSGDI-IFCNYCHKPGHT 240
           A+TRVLR+E S   +S        +  N+     QR+S        + I CNYC KPGH 
Sbjct: 195 AFTRVLRIESSPTSVSIPQPSSALFSKNNNPRAPQRNSTDHRKPESVEIVCNYCRKPGHM 254

Query: 241 KRECRKLLNK-GQKTQSAHVASTPDNAGKLVTIPAEEFAKFQQYQESLTASCSN-PITVI 300
           KR+CRKLL K  Q++Q A +AST D     VTI A+EFAKFQ YQESL AS S+ PI   
Sbjct: 255 KRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQESLQASSSSTPIAST 314

Query: 301 AESGNTSKCLISSTSKWVIDSGDNGQKTQSAYVASTP 334
              GN  KCL++S++KWVIDSG     T ++++ S P
Sbjct: 315 VAPGNI-KCLLTSSTKWVIDSGATAHMTGNSHLFSRP 350

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BLAST of Moc11g30470 vs. NCBI nr
Match: RVW86452.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 316.6 bits (810), Expect = 3.8e-82
Identity = 163/343 (47.52%), Postives = 238/343 (69.39%), Query Frame = 0


Query: 1   MISKITEHKLNRSNYSSWKISVRLFLRSIDMDDHITEDPPKDESKKAWLRDDARLVLQIK 60
           ++SKITEHKLN SNY  W  +++++LRS+  DDH+TE+PP D ++K W++DDARL+LQ+K
Sbjct: 14  IVSKITEHKLNGSNYIEWSKTIKIYLRSVAKDDHLTEEPPNDHTRKLWMQDDARLILQMK 73

Query: 61  NSIEGDIIGLVNECKYVKELLKYLEFLYFGKGNVSRIFEICKRFYQPEFDDQSLTNYFME 120
           NSI  DI+GL + C++VKEL+ YL+FLY GKGNVSR++++   F+ PE   +SLT YFM+
Sbjct: 74  NSINSDIVGLPSHCEFVKELMDYLDFLYSGKGNVSRMYDVWNAFHCPEKGAKSLTAYFMD 133

Query: 121 HKRIYAEFNALLPDSNDAKVRLAQREQRAVISFLLGLLLRFDVAKDQLLSGSEIPALEEA 180
            K++Y E NAL+P S D +V+ AQREQ AV+SFL GL   F+ AK Q+LSGS+I +L+E 
Sbjct: 134 FKKVYEELNALMPFSPDVRVQQAQREQMAVMSFLSGLPSEFETAKSQILSGSDIGSLQEV 193

Query: 181 YTRVLRVEK------SQPILSSQSNRGNTYQGNSTTSNAQRSSAPKSNSGDIIFCNYCHK 240
           ++RVLR E       +  +++   N  N  + N+   N  R+   + N    I C YCH+
Sbjct: 194 FSRVLRTENVSSSQHTNVLVAKGENAENARRVNNRGGN--RAFENRGNDSTTIVCFYCHE 253

Query: 241 PGHTKRECRKLLNKGQKTQSAHVAST-----PDNAGKLVTIPAEEFAKFQQYQESLTASC 300
            GHTK+ CRKL N+ ++ Q+A+VA++      D++ K+VT+ AEEF+K+ QYQ++L A  
Sbjct: 254 AGHTKKNCRKLQNRNRRIQTANVATSDTATFSDSSDKIVTMTAEEFSKYSQYQDALKA-- 313

Query: 301 SNPITVIAESGNTSKCLISSTSKWVIDSGDNGQKTQSAYVAST 333
           S P++ +AESG T  CL+SS++KW+IDSG     T +    ST
Sbjct: 314 STPVSALAESGKT--CLVSSSNKWIIDSGATDHMTGNHKTFST 350

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BLAST of Moc11g30470 vs. NCBI nr
Match: ABY49842.1 (hypothetical protein [Vitis hybrid cultivar])

HSP 1 Score: 315.5 bits (807), Expect = 8.4e-82
Identity = 162/343 (47.23%), Postives = 239/343 (69.68%), Query Frame = 0


Query: 1   MISKITEHKLNRSNYSSWKISVRLFLRSIDMDDHITEDPPKDESKKAWLRDDARLVLQIK 60
           ++SKITEHKLN SNY  W  +++++LRS+  DDH+TE+PP D ++K W++DDARL LQ+K
Sbjct: 14  IVSKITEHKLNGSNYIEWNKTIKIYLRSVAKDDHLTEEPPNDHTRKLWMQDDARLFLQMK 73

Query: 61  NSIEGDIIGLVNECKYVKELLKYLEFLYFGKGNVSRIFEICKRFYQPEFDDQSLTNYFME 120
           NSI  DI+GL++ C++VKEL+ YL+FLY GKGNVSR++++   F+ PE   +SLT YFM+
Sbjct: 74  NSINSDIVGLLSHCEFVKELMDYLDFLYSGKGNVSRMYDVWNAFHCPEKGAKSLTAYFMD 133

Query: 121 HKRIYAEFNALLPDSNDAKVRLAQREQRAVISFLLGLLLRFDVAKDQLLSGSEIPALEEA 180
            K++Y E NAL+P S D +V+ AQREQ AV+SFL GL   F+ AK Q+LSGS+I +L+E 
Sbjct: 134 FKKVYEELNALMPFSPDVRVQQAQREQMAVMSFLSGLPSEFETAKSQILSGSDIGSLQEV 193

Query: 181 YTRVLRVEK------SQPILSSQSNRGNTYQGNSTTSNAQRSSAPKSNSGDIIFCNYCHK 240
           ++RVLR E       +  +++ + N  N  + N+   N    +    +S  I+ C YCH+
Sbjct: 194 FSRVLRTENVSSSQHTNVLIAKRENAENARRVNNRGGNRAFENRGNDSSTTIV-CFYCHE 253

Query: 241 PGHTKRECRKLLNKGQKTQSAHVAST-----PDNAGKLVTIPAEEFAKFQQYQESLTASC 300
            GHTK+ CRKL N+ ++ Q+A+VA++      D++ K+VT+ AEEF+K+ QYQ++L A  
Sbjct: 254 AGHTKKNCRKLQNRNRRIQTANVATSDTATFSDSSNKIVTMTAEEFSKYSQYQDALKA-- 313

Query: 301 SNPITVIAESGNTSKCLISSTSKWVIDSGDNGQKTQSAYVAST 333
           S P++ +AESG T  CL+SS++KW+IDSG     T +    ST
Sbjct: 314 STPVSALAESGKT--CLVSSSNKWIIDSGATDHMTGNHKTFST 351

[Close]

BLAST of Moc11g30470 vs. NCBI nr
Match: RVW38649.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 315.5 bits (807), Expect = 8.4e-82
Identity = 163/344 (47.38%), Postives = 236/344 (68.60%), Query Frame = 0


Query: 1   MISKITEHKLNRSNYSSWKISVRLFLRSIDMDDHITEDPPKDESKKAWLRDDARLVLQIK 60
           ++SKITEHKLN SNY  W  +++++LRS+  DDH+TE+PP D ++K W++DDARL LQ+K
Sbjct: 14  IVSKITEHKLNGSNYIEWSKTIKIYLRSVAKDDHLTEEPPNDHTRKLWMQDDARLFLQMK 73

Query: 61  NSIEGDIIGLVNECKYVKELLKYLEFLYFGKGNVSRIFEICKRFYQPEFDDQSLTNYFME 120
           NSI  DI+GL++ C++VKEL+ YL+FLY GKGNVSR++++   F+ PE   +SLT YFM+
Sbjct: 74  NSINSDIVGLLSHCEFVKELMDYLDFLYSGKGNVSRMYDVWNAFHCPEKGAKSLTAYFMD 133

Query: 121 HKRIYAEFNALLPDSNDAKVRLAQREQRAVISFLLGLLLRFDVAKDQLLSGSEIPALEEA 180
            K++Y E NAL+P S D +V+ AQREQ AV+SFL GL   F+ AK Q+LSGS+I +L+E 
Sbjct: 134 FKKVYEELNALMPFSPDVRVQQAQREQMAVMSFLSGLPSEFETAKSQILSGSDIGSLQEV 193

Query: 181 YTRVLRVEKSQPILSSQSNRGNTYQGNS-------TTSNAQRSSAPKSNSGDIIFCNYCH 240
           ++RVLR E    + SSQ       +G +       T     R+   + N    I C YCH
Sbjct: 194 FSRVLRTEN---VSSSQHTNVLVAKGENAENARRVTNRGRNRAFENRGNDSSTIVCFYCH 253

Query: 241 KPGHTKRECRKLLNKGQKTQSAHVAST-----PDNAGKLVTIPAEEFAKFQQYQESLTAS 300
           + GHTK+ C+KL N+ ++ Q+A+VA++      D++ K+VT+ AEEF+K+ QYQ++L A 
Sbjct: 254 EAGHTKKNCKKLQNRNRRIQTANVATSDTATFSDSSNKIVTMTAEEFSKYSQYQDALKA- 313

Query: 301 CSNPITVIAESGNTSKCLISSTSKWVIDSGDNGQKTQSAYVAST 333
            S P++ +AESG T  CL+SS++KW+IDSG     T +    ST
Sbjct: 314 -STPVSALAESGKT--CLVSSSNKWIIDSGATDHMTGNHKTFST 350

[Close]

BLAST of Moc11g30470 vs. ExPASy TrEMBL
Match: A0A438HPS2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2969 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 1.8e-82
Identity = 163/343 (47.52%), Postives = 238/343 (69.39%), Query Frame = 0


Query: 1   MISKITEHKLNRSNYSSWKISVRLFLRSIDMDDHITEDPPKDESKKAWLRDDARLVLQIK 60
           ++SKITEHKLN SNY  W  +++++LRS+  DDH+TE+PP D ++K W++DDARL+LQ+K
Sbjct: 14  IVSKITEHKLNGSNYIEWSKTIKIYLRSVAKDDHLTEEPPNDHTRKLWMQDDARLILQMK 73

Query: 61  NSIEGDIIGLVNECKYVKELLKYLEFLYFGKGNVSRIFEICKRFYQPEFDDQSLTNYFME 120
           NSI  DI+GL + C++VKEL+ YL+FLY GKGNVSR++++   F+ PE   +SLT YFM+
Sbjct: 74  NSINSDIVGLPSHCEFVKELMDYLDFLYSGKGNVSRMYDVWNAFHCPEKGAKSLTAYFMD 133

Query: 121 HKRIYAEFNALLPDSNDAKVRLAQREQRAVISFLLGLLLRFDVAKDQLLSGSEIPALEEA 180
            K++Y E NAL+P S D +V+ AQREQ AV+SFL GL   F+ AK Q+LSGS+I +L+E 
Sbjct: 134 FKKVYEELNALMPFSPDVRVQQAQREQMAVMSFLSGLPSEFETAKSQILSGSDIGSLQEV 193

Query: 181 YTRVLRVEK------SQPILSSQSNRGNTYQGNSTTSNAQRSSAPKSNSGDIIFCNYCHK 240
           ++RVLR E       +  +++   N  N  + N+   N  R+   + N    I C YCH+
Sbjct: 194 FSRVLRTENVSSSQHTNVLVAKGENAENARRVNNRGGN--RAFENRGNDSTTIVCFYCHE 253

Query: 241 PGHTKRECRKLLNKGQKTQSAHVAST-----PDNAGKLVTIPAEEFAKFQQYQESLTASC 300
            GHTK+ CRKL N+ ++ Q+A+VA++      D++ K+VT+ AEEF+K+ QYQ++L A  
Sbjct: 254 AGHTKKNCRKLQNRNRRIQTANVATSDTATFSDSSDKIVTMTAEEFSKYSQYQDALKA-- 313

Query: 301 SNPITVIAESGNTSKCLISSTSKWVIDSGDNGQKTQSAYVAST 333
           S P++ +AESG T  CL+SS++KW+IDSG     T +    ST
Sbjct: 314 STPVSALAESGKT--CLVSSSNKWIIDSGATDHMTGNHKTFST 350

[Close]

BLAST of Moc11g30470 vs. ExPASy TrEMBL
Match: A0A438DT29 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3495 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 4.0e-82
Identity = 163/344 (47.38%), Postives = 236/344 (68.60%), Query Frame = 0


Query: 1   MISKITEHKLNRSNYSSWKISVRLFLRSIDMDDHITEDPPKDESKKAWLRDDARLVLQIK 60
           ++SKITEHKLN SNY  W  +++++LRS+  DDH+TE+PP D ++K W++DDARL LQ+K
Sbjct: 14  IVSKITEHKLNGSNYIEWSKTIKIYLRSVAKDDHLTEEPPNDHTRKLWMQDDARLFLQMK 73

Query: 61  NSIEGDIIGLVNECKYVKELLKYLEFLYFGKGNVSRIFEICKRFYQPEFDDQSLTNYFME 120
           NSI  DI+GL++ C++VKEL+ YL+FLY GKGNVSR++++   F+ PE   +SLT YFM+
Sbjct: 74  NSINSDIVGLLSHCEFVKELMDYLDFLYSGKGNVSRMYDVWNAFHCPEKGAKSLTAYFMD 133

Query: 121 HKRIYAEFNALLPDSNDAKVRLAQREQRAVISFLLGLLLRFDVAKDQLLSGSEIPALEEA 180
            K++Y E NAL+P S D +V+ AQREQ AV+SFL GL   F+ AK Q+LSGS+I +L+E 
Sbjct: 134 FKKVYEELNALMPFSPDVRVQQAQREQMAVMSFLSGLPSEFETAKSQILSGSDIGSLQEV 193

Query: 181 YTRVLRVEKSQPILSSQSNRGNTYQGNS-------TTSNAQRSSAPKSNSGDIIFCNYCH 240
           ++RVLR E    + SSQ       +G +       T     R+   + N    I C YCH
Sbjct: 194 FSRVLRTEN---VSSSQHTNVLVAKGENAENARRVTNRGRNRAFENRGNDSSTIVCFYCH 253

Query: 241 KPGHTKRECRKLLNKGQKTQSAHVAST-----PDNAGKLVTIPAEEFAKFQQYQESLTAS 300
           + GHTK+ C+KL N+ ++ Q+A+VA++      D++ K+VT+ AEEF+K+ QYQ++L A 
Sbjct: 254 EAGHTKKNCKKLQNRNRRIQTANVATSDTATFSDSSNKIVTMTAEEFSKYSQYQDALKA- 313

Query: 301 CSNPITVIAESGNTSKCLISSTSKWVIDSGDNGQKTQSAYVAST 333
            S P++ +AESG T  CL+SS++KW+IDSG     T +    ST
Sbjct: 314 -STPVSALAESGKT--CLVSSSNKWIIDSGATDHMTGNHKTFST 350

[Close]

BLAST of Moc11g30470 vs. ExPASy TrEMBL
Match: B0FBS2 (Uncharacterized protein OS=Vitis hybrid cultivar OX=241073 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 4.0e-82
Identity = 162/343 (47.23%), Postives = 239/343 (69.68%), Query Frame = 0


Query: 1   MISKITEHKLNRSNYSSWKISVRLFLRSIDMDDHITEDPPKDESKKAWLRDDARLVLQIK 60
           ++SKITEHKLN SNY  W  +++++LRS+  DDH+TE+PP D ++K W++DDARL LQ+K
Sbjct: 14  IVSKITEHKLNGSNYIEWNKTIKIYLRSVAKDDHLTEEPPNDHTRKLWMQDDARLFLQMK 73

Query: 61  NSIEGDIIGLVNECKYVKELLKYLEFLYFGKGNVSRIFEICKRFYQPEFDDQSLTNYFME 120
           NSI  DI+GL++ C++VKEL+ YL+FLY GKGNVSR++++   F+ PE   +SLT YFM+
Sbjct: 74  NSINSDIVGLLSHCEFVKELMDYLDFLYSGKGNVSRMYDVWNAFHCPEKGAKSLTAYFMD 133

Query: 121 HKRIYAEFNALLPDSNDAKVRLAQREQRAVISFLLGLLLRFDVAKDQLLSGSEIPALEEA 180
            K++Y E NAL+P S D +V+ AQREQ AV+SFL GL   F+ AK Q+LSGS+I +L+E 
Sbjct: 134 FKKVYEELNALMPFSPDVRVQQAQREQMAVMSFLSGLPSEFETAKSQILSGSDIGSLQEV 193

Query: 181 YTRVLRVEK------SQPILSSQSNRGNTYQGNSTTSNAQRSSAPKSNSGDIIFCNYCHK 240
           ++RVLR E       +  +++ + N  N  + N+   N    +    +S  I+ C YCH+
Sbjct: 194 FSRVLRTENVSSSQHTNVLIAKRENAENARRVNNRGGNRAFENRGNDSSTTIV-CFYCHE 253

Query: 241 PGHTKRECRKLLNKGQKTQSAHVAST-----PDNAGKLVTIPAEEFAKFQQYQESLTASC 300
            GHTK+ CRKL N+ ++ Q+A+VA++      D++ K+VT+ AEEF+K+ QYQ++L A  
Sbjct: 254 AGHTKKNCRKLQNRNRRIQTANVATSDTATFSDSSNKIVTMTAEEFSKYSQYQDALKA-- 313

Query: 301 SNPITVIAESGNTSKCLISSTSKWVIDSGDNGQKTQSAYVAST 333
           S P++ +AESG T  CL+SS++KW+IDSG     T +    ST
Sbjct: 314 STPVSALAESGKT--CLVSSSNKWIIDSGATDHMTGNHKTFST 351

[Close]

BLAST of Moc11g30470 vs. ExPASy TrEMBL
Match: A5AWD0 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_019194 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.0e-81
Identity = 164/344 (47.67%), Postives = 239/344 (69.48%), Query Frame = 0


Query: 1   MISKITEHKLNRSNYSSWKISVRLFLRSIDMDDHITEDPPKDESKKAWLRDDARLVLQIK 60
           ++SKITEHKLN SNY  W  +++++LRS+  DDH+TE+PP D ++K W++DDARL LQ+K
Sbjct: 14  IVSKITEHKLNGSNYIEWSKTIKIYLRSVAKDDHLTEEPPNDHTRKLWMQDDARLFLQMK 73

Query: 61  NSIEGDIIGLVNECKYVKELLKYLEFLYFGKGNVSRIFEICKRFYQPEFDDQSLTNYFME 120
           NSI  DI+GL++ C++VKEL+ YL+FLY GKGNVSR++++   F+ PE   +SLT YFM+
Sbjct: 74  NSINSDIVGLLSHCEFVKELMDYLDFLYSGKGNVSRMYDVWNAFHCPEKGAKSLTAYFMD 133

Query: 121 HKRIYAEFNALLPDSNDAKVRLAQREQRAVISFLLGLLLRFDVAKDQLLSGSEIPALEEA 180
            K++Y E NAL+P S D +V+ AQREQ AV+SFL GL   F+ AK Q+LSGS+I +L+E 
Sbjct: 134 FKKVYEELNALMPFSPDVRVQQAQREQMAVMSFLSGLPSEFETAKSQILSGSDIGSLQEV 193

Query: 181 YTRVLRVEK------SQPILSSQSNRGNTYQGNSTTSNAQRSSAPKSN-SGDIIFCNYCH 240
           ++RVLR E       +  +++   N  N  + N+   N  R+   + N S   I C YCH
Sbjct: 194 FSRVLRTENVSSSQHTNVLVAKGENAENARRVNNRGGN--RAFENRGNDSXTTIVCFYCH 253

Query: 241 KPGHTKRECRKLLNKGQKTQSAHVAST-----PDNAGKLVTIPAEEFAKFQQYQESLTAS 300
           + GHTK+ CRKL N+ ++ Q+A+VA++      D++ K+VT+ AEEF+K+ QYQ++L A 
Sbjct: 254 EAGHTKKNCRKLQNRNRRIQTANVATSDTATFSDSSNKIVTMTAEEFSKYSQYQDALKA- 313

Query: 301 CSNPITVIAESGNTSKCLISSTSKWVIDSGDNGQKTQSAYVAST 333
            S P++ +AESG T  CL+SS++KW+IDSG     T +    ST
Sbjct: 314 -STPVSALAESGKT--CLVSSSNKWIIDSGATDHMTGNHKTFST 351

[Close]

BLAST of Moc11g30470 vs. ExPASy TrEMBL
Match: A0A438DE60 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1560 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.0e-81
Identity = 162/344 (47.09%), Postives = 235/344 (68.31%), Query Frame = 0


Query: 1   MISKITEHKLNRSNYSSWKISVRLFLRSIDMDDHITEDPPKDESKKAWLRDDARLVLQIK 60
           ++SKITEHKLN SNY  W  +++++LRS+  DDH+TE+PP D ++K W++DDARL LQ+K
Sbjct: 14  IVSKITEHKLNGSNYIEWSKTIKIYLRSVAKDDHLTEEPPNDHTRKLWMQDDARLFLQMK 73

Query: 61  NSIEGDIIGLVNECKYVKELLKYLEFLYFGKGNVSRIFEICKRFYQPEFDDQSLTNYFME 120
           NSI  DI+GL++ C++VKEL+ YL+FLY GKGNVSR++++   F+ PE   +SLT YFM+
Sbjct: 74  NSINSDIVGLLSHCEFVKELMDYLDFLYSGKGNVSRMYDVWNAFHCPEKGAKSLTAYFMD 133

Query: 121 HKRIYAEFNALLPDSNDAKVRLAQREQRAVISFLLGLLLRFDVAKDQLLSGSEIPALEEA 180
            K++Y E NAL+P S D +V+ AQREQ AV+SFL GL   F+ AK Q+LSGS+I +L+E 
Sbjct: 134 FKKVYEELNALMPFSPDVRVQQAQREQMAVMSFLSGLPSEFETAKSQILSGSDIGSLQEV 193

Query: 181 YTRVLRVEKSQPILSSQSNRGNTYQGNS-------TTSNAQRSSAPKSNSGDIIFCNYCH 240
           ++RVLR +    + SSQ       +G +       T     R+   + N    I C YCH
Sbjct: 194 FSRVLRTKN---VSSSQHTNVLVAKGENAENARRVTNRGGNRAFENRGNDSSTIVCFYCH 253

Query: 241 KPGHTKRECRKLLNKGQKTQSAHVAST-----PDNAGKLVTIPAEEFAKFQQYQESLTAS 300
           + GHTK+ CRKL N+ ++ Q+A+VA++      D++ K+VT+ AEEF+K+ QYQ++L A 
Sbjct: 254 EAGHTKKNCRKLQNRNRRIQTANVATSDTATFSDSSNKIVTMTAEEFSKYSQYQDALKA- 313

Query: 301 CSNPITVIAESGNTSKCLISSTSKWVIDSGDNGQKTQSAYVAST 333
            S P++ +AESG T  CL+SS++KW+IDS      T +    ST
Sbjct: 314 -STPVSALAESGKT--CLVSSSNKWIIDSSATDHMTGNHKTFST 350

The following BLAST results are available for this feature:

BLAST of Moc11g30470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022850817.1	3.1e-84	50.30	uncharacterized protein LOC111372670 [Olea europaea var. sylvestris]	[more]
XP_031744753.1	8.9e-84	53.12	uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus]	[more]
RVW86452.1	3.8e-82	47.52	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
ABY49842.1	8.4e-82	47.23	hypothetical protein [Vitis hybrid cultivar]	[more]
RVW38649.1	8.4e-82	47.38	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Moc11g30470 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g30470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438HPS2	1.8e-82	47.52	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438DT29	4.0e-82	47.38	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
B0FBS2	4.0e-82	47.23	Uncharacterized protein OS=Vitis hybrid cultivar OX=241073 PE=4 SV=1	[more]
A5AWD0	2.0e-81	47.67	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_019194 PE=4 SV=1	[more]
A0A438DE60	2.0e-81	47.09	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of Moc11g30470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	4.10.60.10		coord: 198..256 e-value: 5.1E-5 score: 25.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..221
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 385..409
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 385..416
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 5..327
None	No IPR available	PANTHER	PTHR34222:SF15	SUBFAMILY NOT NAMED	coord: 5..327
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 229..244 score: 8.630785
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 212..251

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g30470.1	Moc11g30470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding