Moc11g30200 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g30200
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrotrans_gag domain-containing protein
Location	chr11: 22066340 .. 22067244 (-)
RNA-Seq Expression	Moc11g30200
Synteny	Moc11g30200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAGTATTCTCGACAACTTTGAGTGGGTTGGCCAGGGTATGCTTTCGATAGTTGAAGCGAGGATCGATCTCGAGCTTCAAGAACCTAGCCAGGGCATTTGTGACCCAGTTCGTAGAGGGACGAAGTCAAATCCGACCCGTGGCTTATCTTCTAACCATCAAACAGAGGGCAACAGAGAGCCTTCACGACTACGTGGCTAGGTTTAATAAGGAAAAGTTATAGGTTGAGGGTCTCACGGATGCGGTATCTCCACTAGCCTTCATGTCCGGCATCAAGGACGAGCACCTTTCATTCTCTTTTGGGAAGAAGATGTCGAGCATATTCTAAGAGGCATTGAGCCGAGCTCAAAAATACATGAGTGTAGGAGAATTCTTCCACTCAAAGAAAGAACCAGAGGGAAAATGGTCTGACAAGAAGAGGGAGAGATCTGGGGATAAGCCACAGTCGTCGAGGTGGGAGAAAGAGATCGGATTGGCCAGAAGGATCCGCCTCAGAGGAAGTCCGAGAAATATAACCCAACCACGATCCCACTTGAGTAGGAATTGATGGAAATCAAGGACCAAAGCTTGCTCAAGTGGCCGGAGAGGATGACAGCACCTCCAAGTAAAAGAAGTAAAGGGCGATATTACCTTTTCCATCGAGACCACGGTCATGCCACTCAGGATTGCTTCGATCTCAAAGAAGAAGTGGAATGACTCATTCGGAGAGGGTATCTCAAAGAGTATTAGGAAGACCAACAATGCACATGCTCAAGGCAATACAATCTACATATAACCAGTCTATGAAATTCCCACCACCTGGTGGAATCGGTGAGATCAAAGGAGAGCAACAAGTATTGCGTGAGTGTTATTACACTTCAATGAGGGGCAACGACAAGGCTTCTACTGCGGGTGGCCATTGA

mRNA sequence

ATGTCGAGTATTCTCGACAACTTTGAGTGGGTTGGCCAGGGTATGCTTTCGATAGTTGAAGCGAGGATCGATCTCGAGCTTCAAGAACCTAGCCAGGGCATTTGTGACCCAGTTCGTAGAGGGACGAAGTCAAATCCGACCCGTGGCTTATCTTCTAACCATCAAACAGAGGGCAACAGAGAGCCTTCACGACTACGAGAATTCTTCCACTCAAAGAAAGAACCAGAGGGAAAATGGTCTGACAAGAAGAGGGAGAGATCTGGGGATAAGCCACAGTCGTCGAGGTGGGAGAAAGAGATCGGATTGGCCAGAAGGATCCGCCTCAGAGGAAGTCCGAGAAATATAACCCAACCACGATCCCACTTGAGATTGCTTCGATCTCAAAGAAGAAGTGGAATGACTCATTCGGAGAGGGTATCTCAAAGAGTATTAGGAAGACCAACAATGCACATGCTCAAGGCAATACAATCTACATATAACCAGTCTATGAAATTCCCACCACCTGGTGGAATCGGTGAGATCAAAGGAGAGCAACAAGTATTGCGTGAGTGTTATTACACTTCAATGAGGGGCAACGACAAGGCTTCTACTGCGGGTGGCCATTGA

Coding sequence (CDS)

ATGTCGAGTATTCTCGACAACTTTGAGTGGGTTGGCCAGGGTATGCTTTCGATAGTTGAAGCGAGGATCGATCTCGAGCTTCAAGAACCTAGCCAGGGCATTTGTGACCCAGTTCGTAGAGGGACGAAGTCAAATCCGACCCGTGGCTTATCTTCTAACCATCAAACAGAGGGCAACAGAGAGCCTTCACGACTACGAGAATTCTTCCACTCAAAGAAAGAACCAGAGGGAAAATGGTCTGACAAGAAGAGGGAGAGATCTGGGGATAAGCCACAGTCGTCGAGGTGGGAGAAAGAGATCGGATTGGCCAGAAGGATCCGCCTCAGAGGAAGTCCGAGAAATATAACCCAACCACGATCCCACTTGAGATTGCTTCGATCTCAAAGAAGAAGTGGAATGACTCATTCGGAGAGGGTATCTCAAAGAGTATTAGGAAGACCAACAATGCACATGCTCAAGGCAATACAATCTACATATAACCAGTCTATGAAATTCCCACCACCTGGTGGAATCGGTGAGATCAAAGGAGAGCAACAAGTATTGCGTGAGTGTTATTACACTTCAATGAGGGGCAACGACAAGGCTTCTACTGCGGGTGGCCATTGA

Protein sequence

MSSILDNFEWVGQGMLSIVEARIDLELQEPSQGICDPVRRGTKSNPTRGLSSNHQTEGNREPSRLREFFHSKKEPEGKWSDKKRERSGDKPQSSRWEKEIGLARRIRLRGSPRNITQPRSHLRLLRSQRRSGMTHSERVSQRVLGRPTMHMLKAIQSTYNQSMKFPPPGGIGEIKGEQQVLRECYYTSMRGNDKASTAGGH

Homology

[Close]

BLAST of Moc11g30200 vs. NCBI nr
Match: XP_022146774.1 (uncharacterized protein LOC111015901 [Momordica charantia])

HSP 1 Score: 106.7 bits (265), Expect = 2.4e-19
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 143 VLGRPTMHMLKAIQSTYNQSMKFPPPGGIGEIKGEQQVLRECYYTSMRGNDKASTAGGH 202
           +L RPTMHML+AI STY+QSMKFP PGG+GEIKGEQ+V RECYYTSMRGNDKAST G H
Sbjct: 151 ILERPTMHMLRAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSMRGNDKASTTGRH 209

[Close]

BLAST of Moc11g30200 vs. NCBI nr
Match: XP_022150858.1 (uncharacterized protein LOC111018902 [Momordica charantia])

HSP 1 Score: 106.3 bits (264), Expect = 3.1e-19
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 143 VLGRPTMHMLKAIQSTYNQSMKFPPPGGIGEIKGEQQVLRECYYTSMRGNDKASTAGGH 202
           +LGRPTMHMLKAI S Y+QS+KFP PGGIGEIKGEQ+V RECYY SM+GNDKASTAG H
Sbjct: 208 ILGRPTMHMLKAIPSRYHQSIKFPTPGGIGEIKGEQRVSRECYYASMKGNDKASTAGDH 266

[Close]

BLAST of Moc11g30200 vs. NCBI nr
Match: XP_022144467.1 (uncharacterized protein LOC111014147 [Momordica charantia])

HSP 1 Score: 104.0 bits (258), Expect = 1.6e-18
Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 143 VLGRPTMHMLKAIQSTYNQSMKFPPPGGIGEIKGEQQVLRECYYTSMRGNDKASTAGG 201
           +LGRPTMHML+AI STY+QSMKFP PGG+GEIKGEQ+V RECYYTSMR ND+ ST GG
Sbjct: 198 ILGRPTMHMLRAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSMRDNDRTSTKGG 255

[Close]

BLAST of Moc11g30200 vs. NCBI nr
Match: XP_022155902.1 (uncharacterized protein LOC111022905 [Momordica charantia])

HSP 1 Score: 102.8 bits (255), Expect = 3.5e-18
Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 143 VLGRPTMHMLKAIQSTYNQSMKFPPPGGIGEIKGEQQVLRECYYTSMRGNDKASTAGG 201
           +LGR TMHMLKAI STY+QSMKFP PGG+GEIKGEQ+V RECYYTSM+GND+ ST GG
Sbjct: 213 ILGRLTMHMLKAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSMKGNDRTSTKGG 270

[Close]

BLAST of Moc11g30200 vs. NCBI nr
Match: XP_022150028.1 (uncharacterized protein LOC111018300 [Momordica charantia])

HSP 1 Score: 102.1 bits (253), Expect = 5.9e-18
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 143 VLGRPTMHMLKAIQSTYNQSMKFPPPGGIGEIKGEQQVLRECYYTSMRGNDKASTAGGH 202
           +LGRPT+HMLKAI STY+QS+ FP  GGIGEIK EQ+V RECYYTSM+GND+ASTAGGH
Sbjct: 243 ILGRPTIHMLKAIPSTYHQSINFPTHGGIGEIKEEQRVSRECYYTSMKGNDRASTAGGH 301

[Close]

BLAST of Moc11g30200 vs. ExPASy TrEMBL
Match: A0A6J1CZ14 (uncharacterized protein LOC111015901 OS=Momordica charantia OX=3673 GN=LOC111015901 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.2e-19
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 143 VLGRPTMHMLKAIQSTYNQSMKFPPPGGIGEIKGEQQVLRECYYTSMRGNDKASTAGGH 202
           +L RPTMHML+AI STY+QSMKFP PGG+GEIKGEQ+V RECYYTSMRGNDKAST G H
Sbjct: 151 ILERPTMHMLRAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSMRGNDKASTTGRH 209

[Close]

BLAST of Moc11g30200 vs. ExPASy TrEMBL
Match: A0A6J1DAK4 (uncharacterized protein LOC111018902 OS=Momordica charantia OX=3673 GN=LOC111018902 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.5e-19
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 143 VLGRPTMHMLKAIQSTYNQSMKFPPPGGIGEIKGEQQVLRECYYTSMRGNDKASTAGGH 202
           +LGRPTMHMLKAI S Y+QS+KFP PGGIGEIKGEQ+V RECYY SM+GNDKASTAG H
Sbjct: 208 ILGRPTMHMLKAIPSRYHQSIKFPTPGGIGEIKGEQRVSRECYYASMKGNDKASTAGDH 266

[Close]

BLAST of Moc11g30200 vs. ExPASy TrEMBL
Match: A0A6J1CTS4 (uncharacterized protein LOC111014147 OS=Momordica charantia OX=3673 GN=LOC111014147 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 7.5e-19
Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 143 VLGRPTMHMLKAIQSTYNQSMKFPPPGGIGEIKGEQQVLRECYYTSMRGNDKASTAGG 201
           +LGRPTMHML+AI STY+QSMKFP PGG+GEIKGEQ+V RECYYTSMR ND+ ST GG
Sbjct: 198 ILGRPTMHMLRAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSMRDNDRTSTKGG 255

[Close]

BLAST of Moc11g30200 vs. ExPASy TrEMBL
Match: A0A6J1DQL9 (uncharacterized protein LOC111022905 OS=Momordica charantia OX=3673 GN=LOC111022905 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-18
Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 143 VLGRPTMHMLKAIQSTYNQSMKFPPPGGIGEIKGEQQVLRECYYTSMRGNDKASTAGG 201
           +LGR TMHMLKAI STY+QSMKFP PGG+GEIKGEQ+V RECYYTSM+GND+ ST GG
Sbjct: 213 ILGRLTMHMLKAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSMKGNDRTSTKGG 270

[Close]

BLAST of Moc11g30200 vs. ExPASy TrEMBL
Match: A0A6J1D8C9 (uncharacterized protein LOC111018300 OS=Momordica charantia OX=3673 GN=LOC111018300 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.9e-18
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 143 VLGRPTMHMLKAIQSTYNQSMKFPPPGGIGEIKGEQQVLRECYYTSMRGNDKASTAGGH 202
           +LGRPT+HMLKAI STY+QS+ FP  GGIGEIK EQ+V RECYYTSM+GND+ASTAGGH
Sbjct: 243 ILGRPTIHMLKAIPSTYHQSINFPTHGGIGEIKEEQRVSRECYYTSMKGNDRASTAGGH 301

The following BLAST results are available for this feature:

BLAST of Moc11g30200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146774.1	2.4e-19	81.36	uncharacterized protein LOC111015901 [Momordica charantia]	[more]
XP_022150858.1	3.1e-19	81.36	uncharacterized protein LOC111018902 [Momordica charantia]	[more]
XP_022144467.1	1.6e-18	79.31	uncharacterized protein LOC111014147 [Momordica charantia]	[more]
XP_022155902.1	3.5e-18	79.31	uncharacterized protein LOC111022905 [Momordica charantia]	[more]
XP_022150028.1	5.9e-18	77.97	uncharacterized protein LOC111018300 [Momordica charantia]	[more]

BLAST of Moc11g30200 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g30200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CZ14	1.2e-19	81.36	uncharacterized protein LOC111015901 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1DAK4	1.5e-19	81.36	uncharacterized protein LOC111018902 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1CTS4	7.5e-19	79.31	uncharacterized protein LOC111014147 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1DQL9	1.7e-18	79.31	uncharacterized protein LOC111022905 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1D8C9	2.9e-18	77.97	uncharacterized protein LOC111018300 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of Moc11g30200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g30200.1	Moc11g30200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity