Moc11g30070 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc11g30070
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Locationchr11: 21997814 .. 21998552 (-)
RNA-Seq ExpressionMoc11g30070
SyntenyMoc11g30070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGTGTTATGAGGTAAAAAACGACAAGCGAGGGAGAGATTAGGCCAGGCAAAATAACCTGCGAAGGACGGGCCGGACCGAGCAGGTCTCAGCTCCGACCCCTGCTCGGTGCCGAGACCCGTCCTTATTCCTCTACCGCTGTTAGAGGCGTCCCGGCCCATAGGCCCACGTGTATCAAACCTAGGGTTGGCATTTTATGAAACCCTAGGGGGAAGATCGACTATAAATAGGTAGGGGTCACCCCTTAAAGGTAAGCCAAATTACACTTTCAAGTGTCTTACTTGCTTAATGATTTCTCCCATAACTAACTTAGGCATTGGAGCCAGTGTGACAGAAGTCACACCGATTTAGGGTTGTTCGATTTTGCAGGTATACGGTCCTTTGAGATTCGAGTTTGGTGCACATTGTGAAGTGAACCGGTCTACCAGAATCCAAGAATCAACAATTGGCGCCGTTTGTGGGGATGATACTGATGCAAATCCAACCACGGATCCATTGAATGTACCCGAGGGAGCAATTACAAGAAGCAAAGCAAAGAAGAGTCAAGAGGCTTTCATATTACATCTTCAAAGGCTAGCTAATGCACATGAAGAGACGAAGGTTTATGAGGCCAAAATTCTTTACAATGTTACTTTAATCAGTCAAGAAGAGAATGGAGCAAAGATGACACGGGAAAAGTTGTCTATTTTGAGAGATGGCACGGAGGACAAAAAAAATGTGCAGATTTGTGAATAG

mRNA sequence

ATGGGAGGTGTATACGGTCCTTTGAGATTCGAGTTTGGTGCACATTGTGAAGTGAACCGGTCTACCAGAATCCAAGAATCAACAATTGGCGCCGTTTGTGGGGATGATACTGATGCAAATCCAACCACGGATCCATTGAATGTACCCGAGGGAGCAATTACAAGAAGCAAAGCAAAGAAGAGTCAAGAGGCTTTCATATTACATCTTCAAAGGCTAGCTAATGCACATGAAGAGACGAAGGTTTATGAGGCCAAAATTCTTTACAATGTTACTTTAATCAGTCAAGAAGAGAATGGAGCAAAGATGACACGGGAAAAGTTGTCTATTTTGAGAGATGGCACGGAGGACAAAAAAAATGTGCAGATTTGTGAATAG

Coding sequence (CDS)

ATGGGAGGTGTATACGGTCCTTTGAGATTCGAGTTTGGTGCACATTGTGAAGTGAACCGGTCTACCAGAATCCAAGAATCAACAATTGGCGCCGTTTGTGGGGATGATACTGATGCAAATCCAACCACGGATCCATTGAATGTACCCGAGGGAGCAATTACAAGAAGCAAAGCAAAGAAGAGTCAAGAGGCTTTCATATTACATCTTCAAAGGCTAGCTAATGCACATGAAGAGACGAAGGTTTATGAGGCCAAAATTCTTTACAATGTTACTTTAATCAGTCAAGAAGAGAATGGAGCAAAGATGACACGGGAAAAGTTGTCTATTTTGAGAGATGGCACGGAGGACAAAAAAAATGTGCAGATTTGTGAATAG

Protein sequence

MGGVYGPLRFEFGAHCEVNRSTRIQESTIGAVCGDDTDANPTTDPLNVPEGAITRSKAKKSQEAFILHLQRLANAHEETKVYEAKILYNVTLISQEENGAKMTREKLSILRDGTEDKKNVQICE
Homology
[Close]
BLAST of Moc11g30070 vs. NCBI nr
Match: TYK20861.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 5.3e-17
Identity = 54/91 (59.34%), Postives = 67/91 (73.63%), Query Frame = 0 

Query: 34  GDDTDANPTTDPLNVPEGAITRSKAKKSQEAFILHLQRLANAHEETKVYEAKILYNVTLI 93
           GDD D+    + L+VPEG+IT+ KAKK QEAF LH+Q+LANA  ETK +E K LYNV+  
Sbjct: 187 GDDVDS--LNNLLHVPEGSITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSA 246

Query: 94  SQEENGAKMTREKLSILRDGTEDKKNVQICE 125
           SQEE+  KM REKL  L DGT ++K+VQ CE
Sbjct: 247 SQEEHRVKMAREKLCNLEDGTGNEKSVQNCE 275

[Close]
BLAST of Moc11g30070 vs. NCBI nr
Match: KAA0065364.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 5.3e-17
Identity = 54/91 (59.34%), Postives = 67/91 (73.63%), Query Frame = 0 

Query: 34  GDDTDANPTTDPLNVPEGAITRSKAKKSQEAFILHLQRLANAHEETKVYEAKILYNVTLI 93
           GDD D+    + L+VPEG+IT+ KAKK QEAF LH+Q+LANA  ETK +E K LYNV+  
Sbjct: 187 GDDVDS--LNNLLHVPEGSITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSA 246

Query: 94  SQEENGAKMTREKLSILRDGTEDKKNVQICE 125
           SQEE+  KM REKL  L DGT ++K+VQ CE
Sbjct: 247 SQEEHRVKMAREKLCNLEDGTGNEKSVQNCE 275

[Close]
BLAST of Moc11g30070 vs. NCBI nr
Match: TYK02449.1 (F15O4.13 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-16
Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = 0 

Query: 34   GDDTDANPTTDPLNVPEGAITRSKAKKSQEAFILHLQRLANAHEETKVYEAKILYNVTLI 93
            GDD D+    + L+VPEG IT+ KAKK QEAF LH+Q+LANA  ETK +E K LYNV+  
Sbjct: 1417 GDDVDS--LNNLLHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSA 1476

Query: 94   SQEENGAKMTREKLSILRDGTEDKKNVQ 122
            SQEE+G KM REKL  L DGT ++K+VQ
Sbjct: 1477 SQEEHGVKMAREKLCNLEDGTRNEKSVQ 1502

[Close]
BLAST of Moc11g30070 vs. NCBI nr
Match: KAA0051909.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 5.8e-16
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 0 

Query: 34  GDDTDANPTTDPLNVPEGAITRSKAKKSQEAFILHLQRLANAHEETKVYEAKILYNVTLI 93
           GDD D+    + L+VPEG IT+ KAKK QEAF LH+Q+LANA  ETK +E K LYNV+  
Sbjct: 901 GDDVDS--LNNLLHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSA 960

Query: 94  SQEENGAKMTREKLSILRDGTEDKKNVQ 122
           SQEE+G KM REKL    DGT ++K+VQ
Sbjct: 961 SQEEHGVKMAREKLCNFEDGTGNEKSVQ 986

[Close]
BLAST of Moc11g30070 vs. NCBI nr
Match: TYJ98381.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 7.6e-16
Identity = 49/84 (58.33%), Postives = 63/84 (75.00%), Query Frame = 0 

Query: 38  DANPTTDPLNVPEGAITRSKAKKSQEAFILHLQRLANAHEETKVYEAKILYNVTLISQEE 97
           D +   + L++PEG+IT+ KAKK QEAF LH+Q+LANA  ETK +E K LYNV+  SQEE
Sbjct: 365 DVDSLNNLLHIPEGSITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEE 424

Query: 98  NGAKMTREKLSILRDGTEDKKNVQ 122
           +G KMTREKL  L DG  ++K+VQ
Sbjct: 425 HGVKMTREKLCNLEDGMGNEKSVQ 448

[Close]
BLAST of Moc11g30070 vs. ExPASy TrEMBL
Match: A0A5A7VDK8 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00260 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.5e-17
Identity = 54/91 (59.34%), Postives = 67/91 (73.63%), Query Frame = 0 

Query: 34  GDDTDANPTTDPLNVPEGAITRSKAKKSQEAFILHLQRLANAHEETKVYEAKILYNVTLI 93
           GDD D+    + L+VPEG+IT+ KAKK QEAF LH+Q+LANA  ETK +E K LYNV+  
Sbjct: 187 GDDVDS--LNNLLHVPEGSITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSA 246

Query: 94  SQEENGAKMTREKLSILRDGTEDKKNVQICE 125
           SQEE+  KM REKL  L DGT ++K+VQ CE
Sbjct: 247 SQEEHRVKMAREKLCNLEDGTGNEKSVQNCE 275

[Close]
BLAST of Moc11g30070 vs. ExPASy TrEMBL
Match: A0A5D3DB73 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold682G00260 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.5e-17
Identity = 54/91 (59.34%), Postives = 67/91 (73.63%), Query Frame = 0 

Query: 34  GDDTDANPTTDPLNVPEGAITRSKAKKSQEAFILHLQRLANAHEETKVYEAKILYNVTLI 93
           GDD D+    + L+VPEG+IT+ KAKK QEAF LH+Q+LANA  ETK +E K LYNV+  
Sbjct: 187 GDDVDS--LNNLLHVPEGSITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSA 246

Query: 94  SQEENGAKMTREKLSILRDGTEDKKNVQICE 125
           SQEE+  KM REKL  L DGT ++K+VQ CE
Sbjct: 247 SQEEHRVKMAREKLCNLEDGTGNEKSVQNCE 275

[Close]
BLAST of Moc11g30070 vs. ExPASy TrEMBL
Match: A0A5D3BWE8 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00600 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.7e-17
Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = 0 

Query: 34   GDDTDANPTTDPLNVPEGAITRSKAKKSQEAFILHLQRLANAHEETKVYEAKILYNVTLI 93
            GDD D+    + L+VPEG IT+ KAKK QEAF LH+Q+LANA  ETK +E K LYNV+  
Sbjct: 1417 GDDVDS--LNNLLHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSA 1476

Query: 94   SQEENGAKMTREKLSILRDGTEDKKNVQ 122
            SQEE+G KM REKL  L DGT ++K+VQ
Sbjct: 1477 SQEEHGVKMAREKLCNLEDGTRNEKSVQ 1502

[Close]
BLAST of Moc11g30070 vs. ExPASy TrEMBL
Match: A0A5A7UEI2 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G003620 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.8e-16
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 0 

Query: 34  GDDTDANPTTDPLNVPEGAITRSKAKKSQEAFILHLQRLANAHEETKVYEAKILYNVTLI 93
           GDD D+    + L+VPEG IT+ KAKK QEAF LH+Q+LANA  ETK +E K LYNV+  
Sbjct: 901 GDDVDS--LNNLLHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSA 960

Query: 94  SQEENGAKMTREKLSILRDGTEDKKNVQ 122
           SQEE+G KM REKL    DGT ++K+VQ
Sbjct: 961 SQEEHGVKMAREKLCNFEDGTGNEKSVQ 986

[Close]
BLAST of Moc11g30070 vs. ExPASy TrEMBL
Match: A0A5D3BI77 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G001240 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.7e-16
Identity = 49/84 (58.33%), Postives = 63/84 (75.00%), Query Frame = 0 

Query: 38  DANPTTDPLNVPEGAITRSKAKKSQEAFILHLQRLANAHEETKVYEAKILYNVTLISQEE 97
           D +   + L++PEG+IT+ KAKK QEAF LH+Q+LANA  ETK +E K LYNV+  SQEE
Sbjct: 365 DVDSLNNLLHIPEGSITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEE 424

Query: 98  NGAKMTREKLSILRDGTEDKKNVQ 122
           +G KMTREKL  L DG  ++K+VQ
Sbjct: 425 HGVKMTREKLCNLEDGMGNEKSVQ 448

The following BLAST results are available for this feature:
BLAST of Moc11g30070 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK20861.15.3e-1759.34Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
KAA0065364.15.3e-1759.34Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
TYK02449.11.2e-1660.23F15O4.13 [Cucumis melo var. makuwa][more]
KAA0051909.15.8e-1659.09Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
TYJ98381.17.6e-1658.33Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... [more]
BLAST of Moc11g30070 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc11g30070 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VDK82.5e-1759.34Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3DB732.5e-1759.34Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3BWE85.7e-1760.23F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00600 PE=4... [more]
A0A5A7UEI22.8e-1659.09Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3BI773.7e-1658.33Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
BLAST of Moc11g30070 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc11g30070.1Moc11g30070.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0005488 binding
molecular_function GO:0003824 catalytic activity