Moc11g30000 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g30000
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr11: 21958239 .. 21960784 (+)
RNA-Seq Expression	Moc11g30000
Synteny	Moc11g30000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGAAACGAATAGCCGGTGGCACAAAGGCTATATGTCGCAACCTCCACCCCCGTTCTCGAGAAAACGGTTTTGGAAAACGGGGTTAGAGAAAAAGCTTTTGGAAAACGTTTGAAAGCATTTTAGAAAGTTGTTGTAAGCTTGAATGCAAGAGAATAGATTAGCGGCAAGACAAGAATACAACGCAATGTAGGGAGGATGACTAGGTGTACCCCCCCTCCTAAGGTAGATTATAAAGCATTTTGCCTTTGGCAGGTGTGAACATGCAAAGTGGCGAGGAGTCACTCGCTACCAAAAGTACAAGGAAAACAAAATAACAAGTAAAACTAAATACATGGCATAAAAGTATGTGGAAAGAGGTTGTTATGGGCATGCGGCCACAGGAAACAGGCCCTGGACAAGCATGACCATGACACTCGGCCCACGGCCCAGCTCGTGAATCTCCTGCCTGCGATCAACGATCCCTCGGGCCCTGCAACGCTGAGTTAGGGTTTGGCTACGGAGGTTCTAGAATCATTTTCACGGCTACAAGTAGCAGTGAGATCCAACCCTGAGGAGGCAAGTGACTTATCCCTAGCTAATTATTTTCTCTACTCTCCTTCGCTAACTTAAACATCGGAGCCCGTGTGATTAAGGTCACACTGGTTTAGATCGGTTTGATTTTTCAGGTATCGGTTCCCTTATCATCGAGTTAGGTGTGTGCGAGAAGAAGAGCCGGAGGGTCAAAATTCATGCATCAACAATTGGCGCCGTCTGTGGGAACGATACAGTAAAGCAAGCTTCGTTGAAGCGAAATCCCGATCCGAGCAAAATTCTGATCCAAGGCATGTAGACTGAAACGGCCGACCATTCGGGTGAGGTAGGACTGAGCCCTGATCATCGACTTGATCTAGAAGCAACATGAATCCTGATGAGAGCCATCAATGCTTCGAAAAGAAGAGCCTGAAAGAAGCGGCCGATCACTTGGGTGAGGCAAGACCGAACCCTGATCATCTGCCTTAATCCGACCACCCTTGACAGGGGAGAACCATCGTCGGGCCTGAATGAAGCGATAGACCTCTCGGGTGAGGCAAGACCGAGCCCTGGTCGTCGACTTAATCCGACCACCCTTAATAGGGGAGAACCAGTGACGAGCCTGAATGAAGCAACCGACCTCTCGGGTGAGGTAACGCCGAGCCCTGGTCATCGACTTAATTTGACCACCCTTGACAGGGGAGAACCGACTGAGGAGGTAGAATCTATCCCTCTGACAGCCGAAGATCAACGGGTAAACATCGGAACCAGGCTGGGGAATGAAGAAAGAGAAAGCCTTATAAACTTCTTCAGAAGCAATGCCGACGTGTTTGCATGGTCGCCGGAGGACGTGCCAGGAATCGAGTGAGGAGTCATGATACATCTACTCAATGTCAACGAGAGTTGTAAGCTAGTGAAACAGAAGCGTCACGCATTCAATCAAGAAAGGAACGAGATTGTAGCTGAATAGGTGGAGGAGCTACTGAAAGCAAGCTTCATTCGGGAAGTACATTATCCCCAGTGGATATTCAACACAGTGCTGGTAAAGAAGCCAAACGACAAATAGAGAACGACTTCACGGACATAAATAAGGCCTGTCCAATGGATTCTTTTCCTTTGCCTCGAATAGATCAACTGGTTGACGCCACTGTAGGACATGAAAGATTGAGTTTCATGGATGCCCAACTCCCTTCAATATCCATTATTAGCTTGGTTCCCTACCAACTCTGTTTTCTAAATCCAAAACTGGATGCCAAACGACTTTGATAAAACACCTTGCCTCGTCTACAAATATACTCTCAAAGGATATCGACAATACACTACCTTGAAAGTAGGGGCAATAGGTCATGACCGACTAAGCGACGCAAGCTTGGTAGAACCAGCCTGAGCCGAGCAAGCCGAGCAAGGCTCGGGTTCGACCCAACCGAGTACATCTCTGTTTGGATCAAACCACTGTTCGGCACCGACTAGGTGCAATGAGGCACAAATCTACATTAATCGACAGATTTTGAAAGCAGAATCTACGTTAATCGACAAATTTGGAAAGAATAATTAAACAATCTCAACACGGCCAAACCAGAAGCGGGTCGATTGACCTAGCACAGTTAAAACATGAGATGGAGTAAAAACGACAGCGGGTATAAAACCAGTGGCTATAGCCAAAGGGTTAGAAACCTATGAAAATGAAAGCAACAAAGTCAACTCCATCAACGAAGCCGAATATGAAGCTCTACTAACAGGACAAAAAGTGGCCAGGTACGTTGGGGTCAGGAACATATTGATACTAAGTGATTCACAGCTGGTTGTAGGTCAGGTGAAAGAGGAGTTTCAGGCTAAAGAACCGCGAATGGCAAAATACCTTTCACAGGTAAGAAACCAGCTTGACCAGTTCTCAAAATATGAGATTCGACAAATTCCACGTGCTCAAAACGTCAACACCGATGCGTTAGCTCGACTAGCTGCAGCTTATGAAACCGACCTAGGCAGAACTGTACCGGTCGAGATTCTACCCGAGCCAAGCATAGAAGCTTAG

mRNA sequence

ATGCGGAAACGAATAGCCGGTGGCACAAAGGCTATATGTCGCAACCTCCACCCCCGTTCTCGAGAAAACGGTTTTGGAAAACGGGGTATCGGTTCCCTTATCATCGAGTTAGGTGTGTGCGAGAAGAAGAGCCGGAGGGTCAAAATTCATGCATCAACAATTGGCGCCGTCTGTGGGAACGATACAGTAAAGCAAGCTTCGTTGAAGCGAAATCCCGATCCGAGCAAAATTCTGATCCAAGGCATGGGAGAACCATCGTCGGGCCTGAATGAAGCGATAGACCTCTCGGGTGAGGCAAGACCGAGCCCTGGTCGTCGACTTAATCCGACCACCCTTAATAGGGGAGAACCAGTGACGAGCCTGAATGAAGCAACCGACCTCTCGGGTGAGGTAACGCCGAGCCCTGGTCATCGACTTAATTTGACCACCCTTGACAGGGGAGAACCGACTGAGGAGGTAGAATCTATCCCTCTGACAGCCGAAGATCAACGGCCTGAGCCGAGCAAGCCGAGCAAGGCTCGGGTTCGACCCAACCGAGTACATCTCTGTTTGGATCAAACCACTGTTCGGCACCGACTAGCGGGTATAAAACCAGTGGCTATAGCCAAAGGGTTAGAAACCTATGAAAATGAAAGCAACAAAGTCAACTCCATCAACGAAGCCGAATATGAAGCTCTACTAACAGGACAAAAAGTGGCCAGGTACGTTGGGGTCAGGAACATATTGATACTAAGTGATTCACAGCTGGTTGTAGGTCAGGTGAAAGAGGAGTTTCAGGCTAAAGAACCGCGAATGGCAAAATACCTTTCACAGGTAAGAAACCAGCTTGACCAGTTCTCAAAATATGAGATTCGACAAATTCCACGTGCTCAAAACGTCAACACCGATGCGTTAGCTCGACTAGCTGCAGCTTATGAAACCGACCTAGGCAGAACTGTACCGGTCGAGATTCTACCCGAGCCAAGCATAGAAGCTTAG

Coding sequence (CDS)

ATGCGGAAACGAATAGCCGGTGGCACAAAGGCTATATGTCGCAACCTCCACCCCCGTTCTCGAGAAAACGGTTTTGGAAAACGGGGTATCGGTTCCCTTATCATCGAGTTAGGTGTGTGCGAGAAGAAGAGCCGGAGGGTCAAAATTCATGCATCAACAATTGGCGCCGTCTGTGGGAACGATACAGTAAAGCAAGCTTCGTTGAAGCGAAATCCCGATCCGAGCAAAATTCTGATCCAAGGCATGGGAGAACCATCGTCGGGCCTGAATGAAGCGATAGACCTCTCGGGTGAGGCAAGACCGAGCCCTGGTCGTCGACTTAATCCGACCACCCTTAATAGGGGAGAACCAGTGACGAGCCTGAATGAAGCAACCGACCTCTCGGGTGAGGTAACGCCGAGCCCTGGTCATCGACTTAATTTGACCACCCTTGACAGGGGAGAACCGACTGAGGAGGTAGAATCTATCCCTCTGACAGCCGAAGATCAACGGCCTGAGCCGAGCAAGCCGAGCAAGGCTCGGGTTCGACCCAACCGAGTACATCTCTGTTTGGATCAAACCACTGTTCGGCACCGACTAGCGGGTATAAAACCAGTGGCTATAGCCAAAGGGTTAGAAACCTATGAAAATGAAAGCAACAAAGTCAACTCCATCAACGAAGCCGAATATGAAGCTCTACTAACAGGACAAAAAGTGGCCAGGTACGTTGGGGTCAGGAACATATTGATACTAAGTGATTCACAGCTGGTTGTAGGTCAGGTGAAAGAGGAGTTTCAGGCTAAAGAACCGCGAATGGCAAAATACCTTTCACAGGTAAGAAACCAGCTTGACCAGTTCTCAAAATATGAGATTCGACAAATTCCACGTGCTCAAAACGTCAACACCGATGCGTTAGCTCGACTAGCTGCAGCTTATGAAACCGACCTAGGCAGAACTGTACCGGTCGAGATTCTACCCGAGCCAAGCATAGAAGCTTAG

Protein sequence

MRKRIAGGTKAICRNLHPRSRENGFGKRGIGSLIIELGVCEKKSRRVKIHASTIGAVCGNDTVKQASLKRNPDPSKILIQGMGEPSSGLNEAIDLSGEARPSPGRRLNPTTLNRGEPVTSLNEATDLSGEVTPSPGHRLNLTTLDRGEPTEEVESIPLTAEDQRPEPSKPSKARVRPNRVHLCLDQTTVRHRLAGIKPVAIAKGLETYENESNKVNSINEAEYEALLTGQKVARYVGVRNILILSDSQLVVGQVKEEFQAKEPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNTDALARLAAAYETDLGRTVPVEILPEPSIEA

Homology

[Close]

BLAST of Moc11g30000 vs. NCBI nr
Match: XP_022156571.1 (uncharacterized protein LOC111023448 [Momordica charantia])

HSP 1 Score: 190.7 bits (483), Expect = 2.0e-44
Identity = 104/132 (78.79%), Postives = 111/132 (84.09%), Query Frame = 0


Query: 194 AGIKPVAIAKGLETYENESNKVNSINEAEYEALLTGQKVARYVGVRNILILSDSQLVVGQ 253
           AG+  ++  K    Y    N   S N+AEYEALL G KVARYVGVRNILILSDSQL+VGQ
Sbjct: 667 AGLLLISPDKERFEYVLRFNFHASNNKAEYEALLAGLKVARYVGVRNILILSDSQLIVGQ 726

Query: 254 VKEEFQAKEPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNTDALARLAAAYETDLGRTV 313
           VKEEFQA+EPRMAKYLSQVRNQLDQFSKYEI QIPRAQNV+ DALARLAA YETDLGRTV
Sbjct: 727 VKEEFQAREPRMAKYLSQVRNQLDQFSKYEIXQIPRAQNVBADALARLAAXYETDLGRTV 786

Query: 314 PVEILPEPSIEA 326
           PVEILPEPSIEA
Sbjct: 787 PVEILPEPSIEA 798

[Close]

BLAST of Moc11g30000 vs. NCBI nr
Match: XP_022156571.1 (uncharacterized protein LOC111023448 [Momordica charantia])

HSP 1 Score: 127.5 bits (319), Expect = 2.1e-25
Identity = 63/82 (76.83%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 83  GEPSSGLNEAIDLSGEARPSPGRRLNPTTLNRGEPVTSLNEATDLSGEVTPSPGHRLNLT 142
           GEP SGLN+A DLSG+ARPSPG RLNPTTL++G PV  L +ATDLSG+  PSPGHRLN T
Sbjct: 41  GEPVSGLNKATDLSGKARPSPGYRLNPTTLDKGGPVAGLIKATDLSGDARPSPGHRLNST 100

Query: 143 TLDRGEPTEEVESIPLTAEDQR 165
           TLDRGEP EEVES+PLTAED+R
Sbjct: 101 TLDRGEPAEEVESVPLTAEDRR 122

HSP 2 Score: 182.6 bits (462), Expect = 5.6e-42
Identity = 97/109 (88.99%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 217 SINEAEYEALLTGQKVARYVGVRNILILSDSQLVVGQVKEEFQAKEPRMAKYLSQVRNQL 276
           S NEAEYEALL G KVARYVGVRNILILSDSQL+VGQVKEEFQA+E RM KYLSQVRNQL
Sbjct: 146 SNNEAEYEALLAGLKVARYVGVRNILILSDSQLIVGQVKEEFQARESRMTKYLSQVRNQL 205

Query: 277 DQFSKYEIRQIPRAQNVNTDALARLAAAYETDLGRTVPVEILPEPSIEA 326
           DQFSKYEIRQIPRAQNVN DALARLA  YETDLGRTVPVEIL  PSIEA
Sbjct: 206 DQFSKYEIRQIPRAQNVNADALARLATTYETDLGRTVPVEILLGPSIEA 254

[Close]

BLAST of Moc11g30000 vs. NCBI nr
Match: XP_022158579.1 (uncharacterized protein LOC111025033 [Momordica charantia])

HSP 1 Score: 179.1 bits (453), Expect = 6.1e-41
Identity = 99/132 (75.00%), Postives = 106/132 (80.30%), Query Frame = 0


Query: 194 AGIKPVAIAKGLETYENESNKVNSINEAEYEALLTGQKVARYVGVRNILILSDSQLVVGQ 253
           AG+  ++  K    Y  + N   S NE EYEALL   KV RYVGVRNILILSDSQL+VGQ
Sbjct: 330 AGLLLISPDKERFEYALQFNFHASNNEVEYEALLAALKVYRYVGVRNILILSDSQLIVGQ 389

Query: 254 VKEEFQAKEPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNTDALARLAAAYETDLGRTV 313
           VKE+FQA+E RMAKYLSQVRNQLDQFSKYEIRQIP AQNVN D LARLA AYETDLGRTV
Sbjct: 390 VKEKFQARELRMAKYLSQVRNQLDQFSKYEIRQIPHAQNVNADVLARLAVAYETDLGRTV 449

Query: 314 PVEILPEPSIEA 326
           PVEILP PSIEA
Sbjct: 450 PVEILPGPSIEA 461

[Close]

BLAST of Moc11g30000 vs. NCBI nr
Match: XP_022159204.1 (uncharacterized protein LOC111025623 [Momordica charantia])

HSP 1 Score: 163.3 bits (412), Expect = 3.5e-36
Identity = 98/166 (59.04%), Postives = 116/166 (69.88%), Query Frame = 0


Query: 167 PSKPSKARVRPNRVH------LCLD-QTTVRHRLAGIKPVAIAKGLETYENESNKVNSIN 226
           P+KP    + P  V       L +D  +  R    G+  ++  K    Y    N   S N
Sbjct: 236 PAKPQVCSIDPQLVKEEQPWTLYVDGSSNFRGCETGLLLISPDKERFEYALRFNFHASSN 295

Query: 227 EAEYEALLTGQKVARYVGVRNILILSDSQLVVGQVKEEFQAKEPRMAKYLSQVRNQLDQF 286
           +AEYEALL   KVARY+GV+NILILSDSQL+V QVKEEFQA+EPRMAKYLS+V++QL QF
Sbjct: 296 KAEYEALLARLKVARYIGVKNILILSDSQLIVSQVKEEFQAREPRMAKYLSRVKDQLGQF 355

Query: 287 SKYEIRQIPRAQNVNTDALARLAAAYETDLGRTVPVEILPEPSIEA 326
           SK+EIRQIP  QNVN DALARLAAAY TDLGRT+ VEIL EPSI+A
Sbjct: 356 SKFEIRQIPCTQNVNADALARLAAAYGTDLGRTISVEILLEPSIKA 401

[Close]

BLAST of Moc11g30000 vs. NCBI nr
Match: XP_022159396.1 (uncharacterized protein LOC111025810 [Momordica charantia])

HSP 1 Score: 136.3 bits (342), Expect = 4.6e-28
Identity = 66/107 (61.68%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 217 SINEAEYEALLTGQKVARYVGVRNILILSDSQLVVGQVKEEFQAKEPRMAKYLSQVRNQL 276
           S NEAEYEALL G  VA+ +G  +I + SDSQL+V Q+KEE+Q K+PRM KYLS+VR+ +
Sbjct: 265 SNNEAEYEALLAGPXVAKGLGANHIKVFSDSQLIVNQIKEEYQTKDPRMEKYLSKVRSHJ 324

Query: 277 DQFSKYEIRQIPRAQNVNTDALARLAAAYETDLGRTVPVEILPEPSI 324
            QF  YE+ Q+PR++N N DALA+LA+AYETDL R+VP+EIL  PSI
Sbjct: 325 AQFGTYEVXQVPRSENSNADALAKLASAYETDLARSVPIEILDNPSI 371

[Close]

BLAST of Moc11g30000 vs. ExPASy Swiss-Prot
Match: Q9HSF6 (Ribonuclease HI OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) OX=64091 GN=rnhA PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 4.3e-05
Identity = 33/102 (32.35%), Postives = 51/102 (50.00%), Query Frame = 0


Query: 201 IAKGLETYENESNKVNSINEAEYEALLTGQKVARYVGVRNILILSDSQLVVGQVKEEFQA 260
           +A+G +T    +N     N+AEY+AL+   + A   G  +I +  DSQLV  Q+   +  
Sbjct: 99  VAEGGDTIGRATN-----NQAEYDALIAALEAAADFGFDDIELRGDSQLVEKQLTGAWDT 158

Query: 261 KEPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNTDALARLA 303
            +P + +   + R  L  F  + I  +PRA N   DALA  A
Sbjct: 159 NDPDLRRKRVRARELLTGFDDWSITHVPRATNERADALANEA 195

[Close]

BLAST of Moc11g30000 vs. ExPASy TrEMBL
Match: A0A6J1DVC6 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023448 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.2e-44
Identity = 104/132 (78.79%), Postives = 111/132 (84.09%), Query Frame = 0


Query: 194 AGIKPVAIAKGLETYENESNKVNSINEAEYEALLTGQKVARYVGVRNILILSDSQLVVGQ 253
           AG+  ++  K    Y    N   S N+AEYEALL G KVARYVGVRNILILSDSQL+VGQ
Sbjct: 667 AGLLLISPDKERFEYVLRFNFHASNNKAEYEALLAGLKVARYVGVRNILILSDSQLIVGQ 726

Query: 254 VKEEFQAKEPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNTDALARLAAAYETDLGRTV 313
           VKEEFQA+EPRMAKYLSQVRNQLDQFSKYEI QIPRAQNV+ DALARLAA YETDLGRTV
Sbjct: 727 VKEEFQAREPRMAKYLSQVRNQLDQFSKYEIXQIPRAQNVDADALARLAAXYETDLGRTV 786

Query: 314 PVEILPEPSIEA 326
           PVEILPEPSIEA
Sbjct: 787 PVEILPEPSIEA 798

[Close]

BLAST of Moc11g30000 vs. ExPASy TrEMBL
Match: A0A6J1DVC6 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023448 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-25
Identity = 63/82 (76.83%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 83  GEPSSGLNEAIDLSGEARPSPGRRLNPTTLNRGEPVTSLNEATDLSGEVTPSPGHRLNLT 142
           GEP SGLN+A DLSG+ARPSPG RLNPTTL++G PV  L +ATDLSG+  PSPGHRLN T
Sbjct: 41  GEPVSGLNKATDLSGKARPSPGYRLNPTTLDKGGPVAGLIKATDLSGDARPSPGHRLNST 100

Query: 143 TLDRGEPTEEVESIPLTAEDQR 165
           TLDRGEP EEVES+PLTAED+R
Sbjct: 101 TLDRGEPAEEVESVPLTAEDRR 122

HSP 2 Score: 182.6 bits (462), Expect = 2.7e-42
Identity = 97/109 (88.99%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 217 SINEAEYEALLTGQKVARYVGVRNILILSDSQLVVGQVKEEFQAKEPRMAKYLSQVRNQL 276
           S NEAEYEALL G KVARYVGVRNILILSDSQL+VGQVKEEFQA+E RM KYLSQVRNQL
Sbjct: 146 SNNEAEYEALLAGLKVARYVGVRNILILSDSQLIVGQVKEEFQARESRMTKYLSQVRNQL 205

Query: 277 DQFSKYEIRQIPRAQNVNTDALARLAAAYETDLGRTVPVEILPEPSIEA 326
           DQFSKYEIRQIPRAQNVN DALARLA  YETDLGRTVPVEIL  PSIEA
Sbjct: 206 DQFSKYEIRQIPRAQNVNADALARLATTYETDLGRTVPVEILLGPSIEA 254

[Close]

BLAST of Moc11g30000 vs. ExPASy TrEMBL
Match: A0A6J1DZU0 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025033 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 3.0e-41
Identity = 99/132 (75.00%), Postives = 106/132 (80.30%), Query Frame = 0


Query: 194 AGIKPVAIAKGLETYENESNKVNSINEAEYEALLTGQKVARYVGVRNILILSDSQLVVGQ 253
           AG+  ++  K    Y  + N   S NE EYEALL   KV RYVGVRNILILSDSQL+VGQ
Sbjct: 330 AGLLLISPDKERFEYALQFNFHASNNEVEYEALLAALKVYRYVGVRNILILSDSQLIVGQ 389

Query: 254 VKEEFQAKEPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNTDALARLAAAYETDLGRTV 313
           VKE+FQA+E RMAKYLSQVRNQLDQFSKYEIRQIP AQNVN D LARLA AYETDLGRTV
Sbjct: 390 VKEKFQARELRMAKYLSQVRNQLDQFSKYEIRQIPHAQNVNADVLARLAVAYETDLGRTV 449

Query: 314 PVEILPEPSIEA 326
           PVEILP PSIEA
Sbjct: 450 PVEILPGPSIEA 461

[Close]

BLAST of Moc11g30000 vs. ExPASy TrEMBL
Match: A0A6J1E1Q5 (uncharacterized protein LOC111025623 OS=Momordica charantia OX=3673 GN=LOC111025623 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.7e-36
Identity = 98/166 (59.04%), Postives = 116/166 (69.88%), Query Frame = 0


Query: 167 PSKPSKARVRPNRVH------LCLD-QTTVRHRLAGIKPVAIAKGLETYENESNKVNSIN 226
           P+KP    + P  V       L +D  +  R    G+  ++  K    Y    N   S N
Sbjct: 236 PAKPQVCSIDPQLVKEEQPWTLYVDGSSNFRGCETGLLLISPDKERFEYALRFNFHASSN 295

Query: 227 EAEYEALLTGQKVARYVGVRNILILSDSQLVVGQVKEEFQAKEPRMAKYLSQVRNQLDQF 286
           +AEYEALL   KVARY+GV+NILILSDSQL+V QVKEEFQA+EPRMAKYLS+V++QL QF
Sbjct: 296 KAEYEALLARLKVARYIGVKNILILSDSQLIVSQVKEEFQAREPRMAKYLSRVKDQLGQF 355

Query: 287 SKYEIRQIPRAQNVNTDALARLAAAYETDLGRTVPVEILPEPSIEA 326
           SK+EIRQIP  QNVN DALARLAAAY TDLGRT+ VEIL EPSI+A
Sbjct: 356 SKFEIRQIPCTQNVNADALARLAAAYGTDLGRTISVEILLEPSIKA 401

[Close]

BLAST of Moc11g30000 vs. ExPASy TrEMBL
Match: A0A6J1E3S9 (uncharacterized protein LOC111025810 OS=Momordica charantia OX=3673 GN=LOC111025810 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.7e-28
Identity = 67/107 (62.62%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 217 SINEAEYEALLTGQKVARYVGVRNILILSDSQLVVGQVKEEFQAKEPRMAKYLSQVRNQL 276
           S NEAEYEALL G  VA+ +G  +I + SDSQL+V Q+KEE+Q K+PRM KYLS+VR+ L
Sbjct: 265 SNNEAEYEALLAGPXVAKGLGANHIKVFSDSQLIVNQIKEEYQTKDPRMEKYLSKVRSHL 324

Query: 277 DQFSKYEIRQIPRAQNVNTDALARLAAAYETDLGRTVPVEILPEPSI 324
            QF  YE+ Q+PR++N N DALA+LA+AYETDL R+VP+EIL  PSI
Sbjct: 325 AQFGTYEVXQVPRSENSNADALAKLASAYETDLARSVPIEILDNPSI 371

The following BLAST results are available for this feature:

BLAST of Moc11g30000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156571.1	2.0e-44	78.79	uncharacterized protein LOC111023448 [Momordica charantia]	[more]
XP_022156571.1	2.1e-25	76.83	uncharacterized protein LOC111023448 [Momordica charantia]	[more]
XP_022158579.1	6.1e-41	75.00	uncharacterized protein LOC111025033 [Momordica charantia]	[more]
XP_022159204.1	3.5e-36	59.04	uncharacterized protein LOC111025623 [Momordica charantia]	[more]
XP_022159396.1	4.6e-28	61.68	uncharacterized protein LOC111025810 [Momordica charantia]	[more]

BLAST of Moc11g30000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9HSF6	4.3e-05	32.35	Ribonuclease HI OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC...	[more]

BLAST of Moc11g30000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVC6	2.2e-44	78.79	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023448 PE=4 SV=1	[more]
A0A6J1DVC6	1.0e-25	76.83	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023448 PE=4 SV=1	[more]
A0A6J1DZU0	3.0e-41	75.00	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025033 PE=4 SV=1	[more]
A0A6J1E1Q5	1.7e-36	59.04	uncharacterized protein LOC111025623 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1E3S9	1.7e-28	62.62	uncharacterized protein LOC111025810 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of Moc11g30000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 212..302 e-value: 5.7E-16 score: 58.4
IPR002156	Ribonuclease H domain	PROSITE	PS50879	RNASE_H	coord: 201..304 score: 9.269737
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 192..313 e-value: 1.0E-20 score: 76.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..176
None	No IPR available	PANTHER	PTHR46387	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	coord: 219..310
None	No IPR available	PANTHER	PTHR46387:SF6	14.7 KDA RIBONUCLEASE H-LIKE PROTEIN	coord: 219..310
None	No IPR available	CDD	cd09279	RNase_HI_like	coord: 219..303 e-value: 4.10716E-29 score: 106.403
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 194..300

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g30000.1	Moc11g30000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity