Moc11g29970 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc11g29970
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionprotein SPIRRIG
Locationchr11: 21938076 .. 21938604 (-)
RNA-Seq ExpressionMoc11g29970
SyntenyMoc11g29970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACCCGAAAGGAGTCCACGACGCTCTGATGACAACTGCTCTGCCAAGAGGAGGTTGAACTTGGACGACCCCCAGGTCGGAGGACCCGAAGATGGGACCAGCCGATCGAACCTAGAACGTCAGGAAGGGTTGCCCGAGGCGCATGTAGTAACGACCCCTGAGCCGCTCCAAAAGCGCGGCCCTAGAAGACAAGGTGGAGGGCATGCTTCAACGTATGACCCAAGTCCTTCAACAATTCGAACAACAAGAGCCCGATGAGATACCCCTTGTCAGAGATCCCAAGAAAGGGAAAGGCTCAGCACAAAGTGAGACTGAAGAGTCAACAAACAATGTAGGGAACAAGCTGAGGATAGGTGGAAACACCAGACGACGAATCCGGATTTTCGACTCCCAAAAGAGCAAAAAACAGCAGAAATCCCCGATACCAAATGTGGGCAAGAACAACCAGGATAATCGAAACTCTGAGCTGATAGACCTCGACAAAGACAAACCGACGGATTGGCCAGAGTTGTCGGAGAAGCGATAA

mRNA sequence

ATGACACCCGAAAGGAGTCCACGACGCTCTGATGACAACTGCTCTGCCAAGAGGAGGTTGAACTTGGACGACCCCCAGGTCGGAGGACCCGAAGATGGGACCAGCCGATCGAACCTAGAACGTCAGGAAGGGTTGCCCGAGGCGCATGTAGTAACGACCCCTGAGCCGCTCCAAAAGCGCGGCCCTAGAAGACAAGGTGGAGGGCATGCTTCAACAGATCCCAAGAAAGGGAAAGGCTCAGCACAAAGTGAGACTGAAGAGTCAACAAACAATGTAGGGAACAAGCTGAGGATAGGTGGAAACACCAGACGACGAATCCGGATTTTCGACTCCCAAAAGAGCAAAAAACAGCAGAAATCCCCGATACCAAATGTGGGCAAGAACAACCAGGATAATCGAAACTCTGAGCTGATAGACCTCGACAAAGACAAACCGACGGATTGGCCAGAGTTGTCGGAGAAGCGATAA

Coding sequence (CDS)

ATGACACCCGAAAGGAGTCCACGACGCTCTGATGACAACTGCTCTGCCAAGAGGAGGTTGAACTTGGACGACCCCCAGGTCGGAGGACCCGAAGATGGGACCAGCCGATCGAACCTAGAACGTCAGGAAGGGTTGCCCGAGGCGCATGTAGTAACGACCCCTGAGCCGCTCCAAAAGCGCGGCCCTAGAAGACAAGGTGGAGGGCATGCTTCAACAGATCCCAAGAAAGGGAAAGGCTCAGCACAAAGTGAGACTGAAGAGTCAACAAACAATGTAGGGAACAAGCTGAGGATAGGTGGAAACACCAGACGACGAATCCGGATTTTCGACTCCCAAAAGAGCAAAAAACAGCAGAAATCCCCGATACCAAATGTGGGCAAGAACAACCAGGATAATCGAAACTCTGAGCTGATAGACCTCGACAAAGACAAACCGACGGATTGGCCAGAGTTGTCGGAGAAGCGATAA

Protein sequence

MTPERSPRRSDDNCSAKRRLNLDDPQVGGPEDGTSRSNLERQEGLPEAHVVTTPEPLQKRGPRRQGGGHASTDPKKGKGSAQSETEESTNNVGNKLRIGGNTRRRIRIFDSQKSKKQQKSPIPNVGKNNQDNRNSELIDLDKDKPTDWPELSEKR
Homology
BLAST of Moc11g29970 vs. NCBI nr
Match: XP_022145129.1 (uncharacterized protein LOC111014646 [Momordica charantia])

HSP 1 Score: 202.6 bits (514), Expect = 2.5e-48
Identity = 116/177 (65.54%), Postives = 127/177 (71.75%), Query Frame = 0

Query: 1   MTPERSPRRSDDNCSAKRRLNLDDPQVGGPEDGTSRSNLERQEGLPEAHVVTTPEPLQK- 60
           MTPERSPRRSDDNCSAKRRLNLDDPQVGGPEDGTS+ NLERQEGLPEAH +TTPEPLQK 
Sbjct: 1   MTPERSPRRSDDNCSAKRRLNLDDPQVGGPEDGTSQPNLERQEGLPEAHALTTPEPLQKQ 60

Query: 61  -------------------RGPRRQGGGHAS--TDPKKGKGSAQSETEESTNNVGNKLRI 120
                              R   RQ         DP+KGKG AQSETEESTN+ G+KLRI
Sbjct: 61  FAVLEDKVEGMLQRMTQVLRQYERQESDEVPLVRDPRKGKGPAQSETEESTNSAGSKLRI 120

Query: 121 GGNTRRRIRIFDSQKSKKQQKSPIPNVGKNNQDNRNSELIDLDKDKPTDWPELSEKR 156
           GGNTRRR +IFDSQK KKQ K   PN G+++ D+RNSE + LDK KP D PE SEKR
Sbjct: 121 GGNTRRRTQIFDSQKMKKQHKYSAPNGGRSDHDDRNSEPVSLDKGKPADQPESSEKR 177

BLAST of Moc11g29970 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 193.0 bits (489), Expect = 2.0e-45
Identity = 107/159 (67.30%), Postives = 122/159 (76.73%), Query Frame = 0

Query: 1   MTPERSPRRSDDNCSAKRRLNLDDPQVGGPEDGTSRSNLERQEGLPEAHVVTTPEPLQKR 60
           MTPERSPRRSDD+CSAKRRLNL DPQVGGPEDGTS+ N ERQEGL E   +TTPEP QK+
Sbjct: 1   MTPERSPRRSDDDCSAKRRLNLGDPQVGGPEDGTSQPNQERQEGLXEXXALTTPEPFQKQ 60

Query: 61  ----GPRRQGGGHASTDPKKGKGSAQSETEESTNNVGNKLRIGGNTRRRIRIFDSQKSKK 120
                 +         DPKKGKG  +S+TEESTN+VG+KLRIGGNTR+R RIFD +K+KK
Sbjct: 61  FAVLEDKESDEVPLVRDPKKGKGPTESDTEESTNSVGSKLRIGGNTRQRTRIFDPRKTKK 120

Query: 121 QQKSPIPNVGKNNQDNRNSELIDLDKDKPTDWPELSEKR 156
           Q KSP PN GK++ D+RNSE I LDK KP D PE SEKR
Sbjct: 121 QHKSPAPNGGKSDHDDRNSEPISLDKGKPADRPESSEKR 159

BLAST of Moc11g29970 vs. NCBI nr
Match: XP_022155816.1 (protein SPIRRIG [Momordica charantia])

HSP 1 Score: 95.1 bits (235), Expect = 5.6e-16
Identity = 52/85 (61.18%), Postives = 68/85 (80.00%), Query Frame = 0

Query: 74  PKKGKGSAQSETEESTNNVGNKLRIGGNTRRRIRIFDS---QKSKKQQKSPIPNVGKNNQ 133
           P+KGKG  +SE+EESTN+VG++LR+  N +RR + FDS   QK KKQQKSP+P+ GK+N 
Sbjct: 17  PRKGKGPIESESEESTNSVGSRLRLEENIKRRTQNFDSRGQQKDKKQQKSPVPDGGKSNH 76

Query: 134 DNRNSELIDLDKDKPTDWPELSEKR 156
           D +N+E IDLDKDK TD PELSE++
Sbjct: 77  DKQNAEPIDLDKDKSTDRPELSERQ 101

BLAST of Moc11g29970 vs. NCBI nr
Match: XP_022159109.1 (uncharacterized protein LOC111025548 [Momordica charantia])

HSP 1 Score: 65.9 bits (159), Expect = 3.6e-07
Identity = 37/53 (69.81%), Postives = 39/53 (73.58%), Query Frame = 0

Query: 103 RRRIRIFDSQKSKKQQKSPIPNVGKNNQDNRNSELIDLDKDKPTDWPELSEKR 156
           RRR RIFDSQK KKQ KS  PN  KN+ DNRNSE I L+K KP D PE SEKR
Sbjct: 12  RRRTRIFDSQKIKKQHKSLAPNGSKNDHDNRNSEPISLNKGKPIDRPESSEKR 64

BLAST of Moc11g29970 vs. ExPASy TrEMBL
Match: A0A6J1CUA7 (uncharacterized protein LOC111014646 OS=Momordica charantia OX=3673 GN=LOC111014646 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.2e-48
Identity = 116/177 (65.54%), Postives = 127/177 (71.75%), Query Frame = 0

Query: 1   MTPERSPRRSDDNCSAKRRLNLDDPQVGGPEDGTSRSNLERQEGLPEAHVVTTPEPLQK- 60
           MTPERSPRRSDDNCSAKRRLNLDDPQVGGPEDGTS+ NLERQEGLPEAH +TTPEPLQK 
Sbjct: 1   MTPERSPRRSDDNCSAKRRLNLDDPQVGGPEDGTSQPNLERQEGLPEAHALTTPEPLQKQ 60

Query: 61  -------------------RGPRRQGGGHAS--TDPKKGKGSAQSETEESTNNVGNKLRI 120
                              R   RQ         DP+KGKG AQSETEESTN+ G+KLRI
Sbjct: 61  FAVLEDKVEGMLQRMTQVLRQYERQESDEVPLVRDPRKGKGPAQSETEESTNSAGSKLRI 120

Query: 121 GGNTRRRIRIFDSQKSKKQQKSPIPNVGKNNQDNRNSELIDLDKDKPTDWPELSEKR 156
           GGNTRRR +IFDSQK KKQ K   PN G+++ D+RNSE + LDK KP D PE SEKR
Sbjct: 121 GGNTRRRTQIFDSQKMKKQHKYSAPNGGRSDHDDRNSEPVSLDKGKPADQPESSEKR 177

BLAST of Moc11g29970 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 9.5e-46
Identity = 107/159 (67.30%), Postives = 122/159 (76.73%), Query Frame = 0

Query: 1   MTPERSPRRSDDNCSAKRRLNLDDPQVGGPEDGTSRSNLERQEGLPEAHVVTTPEPLQKR 60
           MTPERSPRRSDD+CSAKRRLNL DPQVGGPEDGTS+ N ERQEGL E   +TTPEP QK+
Sbjct: 1   MTPERSPRRSDDDCSAKRRLNLGDPQVGGPEDGTSQPNQERQEGLXEXXALTTPEPFQKQ 60

Query: 61  ----GPRRQGGGHASTDPKKGKGSAQSETEESTNNVGNKLRIGGNTRRRIRIFDSQKSKK 120
                 +         DPKKGKG  +S+TEESTN+VG+KLRIGGNTR+R RIFD +K+KK
Sbjct: 61  FAVLEDKESDEVPLVRDPKKGKGPTESDTEESTNSVGSKLRIGGNTRQRTRIFDPRKTKK 120

Query: 121 QQKSPIPNVGKNNQDNRNSELIDLDKDKPTDWPELSEKR 156
           Q KSP PN GK++ D+RNSE I LDK KP D PE SEKR
Sbjct: 121 QHKSPAPNGGKSDHDDRNSEPISLDKGKPADRPESSEKR 159

BLAST of Moc11g29970 vs. ExPASy TrEMBL
Match: A0A6J1DSV3 (protein SPIRRIG OS=Momordica charantia OX=3673 GN=LOC111022848 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.7e-16
Identity = 52/85 (61.18%), Postives = 68/85 (80.00%), Query Frame = 0

Query: 74  PKKGKGSAQSETEESTNNVGNKLRIGGNTRRRIRIFDS---QKSKKQQKSPIPNVGKNNQ 133
           P+KGKG  +SE+EESTN+VG++LR+  N +RR + FDS   QK KKQQKSP+P+ GK+N 
Sbjct: 17  PRKGKGPIESESEESTNSVGSRLRLEENIKRRTQNFDSRGQQKDKKQQKSPVPDGGKSNH 76

Query: 134 DNRNSELIDLDKDKPTDWPELSEKR 156
           D +N+E IDLDKDK TD PELSE++
Sbjct: 77  DKQNAEPIDLDKDKSTDRPELSERQ 101

BLAST of Moc11g29970 vs. ExPASy TrEMBL
Match: A0A6J1E1E7 (uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025548 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-07
Identity = 37/53 (69.81%), Postives = 39/53 (73.58%), Query Frame = 0

Query: 103 RRRIRIFDSQKSKKQQKSPIPNVGKNNQDNRNSELIDLDKDKPTDWPELSEKR 156
           RRR RIFDSQK KKQ KS  PN  KN+ DNRNSE I L+K KP D PE SEKR
Sbjct: 12  RRRTRIFDSQKIKKQHKSLAPNGSKNDHDNRNSEPISLNKGKPIDRPESSEKR 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022145129.12.5e-4865.54uncharacterized protein LOC111014646 [Momordica charantia][more]
XP_022158830.12.0e-4567.30uncharacterized protein LOC111025293 [Momordica charantia][more]
XP_022155816.15.6e-1661.18protein SPIRRIG [Momordica charantia][more]
XP_022159109.13.6e-0769.81uncharacterized protein LOC111025548 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CUA71.2e-4865.54uncharacterized protein LOC111014646 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A6J1DWY09.5e-4667.30uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DSV32.7e-1661.18protein SPIRRIG OS=Momordica charantia OX=3673 GN=LOC111022848 PE=4 SV=1[more]
A0A6J1E1E71.7e-0769.81uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 115..133
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..97

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc11g29970.1Moc11g29970.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm