Moc11g29830 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g29830
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr11: 21868902 .. 21870476 (-)
RNA-Seq Expression	Moc11g29830
Synteny	Moc11g29830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATCAGCAGAGAAGTCAGGTTTTGAAGGAATCATAAAGTTCGATGGGGCCAATTTCGAATATTGGAAGATGCAGATTAAGGATTACTTGACCTGCAAGAAGTTGAATAAAGCTTTAAAGGAACGACCAGCAGGGATGAAAGATGAAGATTGGGTGGAGACGAATGAACAGGCAGTTGCCTTTATCAGATTGTGTTTGTTGATGAATGTGGCAAGTCTCGTAGCAAACGAAACGACAGCAATAGATCTGATGAAAGCACTGGAGAATAGGTATGAGAAACCCTCAGCTAATAATAAGGTATATCTCGTAAGGAGGTTCTTTAACATTCAAATGGAAGAGAATACTTCTGTCAATTCCCACATAAATGAGGTCACAAAATTAATCAATCAATTGGCATCAGTTAAGATTACTTTTAGTGACGAAGTGAATGTTATTCAGTTGCTAACATCTTTACCTGAAAGTTGGGAAACGATGAAGACAGCAGTGTCCAATTCGTTAGGAGACAAATCTTTGAAATTTTCAGAAATTTGTGATGCGACAATTGCTGAAGAAATTCGCAGAAAGGGGAGTGGAAAAAAGTCTACTTCCGTACAAGGCTCAGCATTGGCTGTCGAAAAAGGTAAAGAGAAAGTTGCGTCTAATGACAGGCAGCAGAAGCATAGTAAGAGGAATTGGAAGAGAGATGTTCAATGTTTTCACTGCCACAAAAAATGTCACTTCAAGAAAAATTGTAAAATATTAAAAGAGGATCTGAAAAGGTATATGGCAGAGTCAAATGCAGTTGTAGACGATGCCCTCGTCTATGTTGACAGCAACACAGAAATAGGAAACCAGTCATCGGAGTGGGTAATAGACAGTGCAGCTTCAGTACACATATCTTCAAACAGAAGATTATTCACATCTTTCAGAAGAAGCAATTGCGGCCACGTGAGGATGGGGAATGGAAGACTTTCCAAGACTAAAGGGATTGGAAATATACGATTGAAGACCAATAGTGGGACTGAGTTATTACTGCGAGATGTCAGGTATGTACCCAGTATCAAAATGAACCTTATCTCTACAGGTAAGTTGGACGATGATGGTTATCAAAGTGAGTTTGGTGGGAACCAGTGGAAGCTCACCAAAGGATCCAAGTTGGTGGCAATTGGCCACAGAAGATCTACAGTTTACACGTCGCAATTGAGTGTTGCCAGAGGATCATTGAAACAGTGGATGCAAGTTGCAGATGGTGTCCAAAGAGGTAGGACTAAGCCAGCAACGAAGACAACTAGAACAGATCAGAAGGATCTGCCATCAATTCAGATACAACAATTGGGAAGTCAAAAAACGATAACAAGTTCTTTAGGTTGTCTGGGATTATCTCCAGTTGTCAGACGAAAGGGTGAATTGATGAAGTCGCGTCAGCGAAGAGTTGCATCAGAGAAGATAAACTCAGTAGGTGCTGAGGTAAAGAATGAAGTTTCAATTCTGGCAGCAGGCTTGAATATAGTTGTCAAGTCATCAGTGGGAAGTTCTTTCTTCAAGAATCAGTGTTTGAGAACGAAGAAGGAAGCTTCAAATATCACCACTTAG

mRNA sequence

ATGGGATCAGCAGAGAAGTCAGGTTTTGAAGGAATCATAAAGTTCGATGGGGCCAATTTCGAATATTGGAAGATGCAGATTAAGGATTACTTGACCTGCAAGAAGTTGAATAAAGCTTTAAAGGAACGACCAGCAGGGATGAAAGATGAAGATTGGGTGGAGACGAATGAACAGGCAGTTGCCTTTATCAGATTGTGTTTGTTGATGAATGTGGCAAGTCTCGTAGCAAACGAAACGACAGCAATAGATCTGATGAAAGCACTGGAGAATAGGTATGAGAAACCCTCAGCTAATAATAAGGTATATCTCGTAAGGAGGTTCTTTAACATTCAAATGGAAGAGAATACTTCTGTCAATTCCCACATAAATGAGGTCACAAAATTAATCAATCAATTGGCATCAGTTAAGATTACTTTTAGTGACGAAGTGAATGTTATTCAGTTGCTAACATCTTTACCTGAAAGTTGGGAAACGATGAAGACAGCAGTGTCCAATTCGTTAGGAGACAAATCTTTGAAATTTTCAGAAATTTGTGATGCGACAATTGCTGAAGAAATTCGCAGAAAGGGGAGTGGAAAAAAGTCTACTTCCGTACAAGGCTCAGCATTGGCTGTCGAAAAAGGTAAAGAGAAAGTTGCGTCTAATGACAGGCAGCAGAAGCATAGATCCAAGTTGGTGGCAATTGGCCACAGAAGATCTACAGTTTACACGTCGCAATTGAGTGTTGCCAGAGGATCATTGAAACAGTGGATGCAAGTTGCAGATGGTGTCCAAAGAGGTAGGACTAAGCCAGCAACGAAGACAACTAGAACAGATCAGAAGGATCTGCCATCAATTCAGATACAACAATTGGGAAGTCAAAAAACGATAACAAGTTCTTTAGGTTGTCTGGGATTATCTCCAGTTGTCAGACGAAAGGGTGAATTGATGAAGTCGCGTCAGCGAAGAGTTGCATCAGAGAAGATAAACTCAGTAGGTGCTGAGGTAAAGAATGAAGTTTCAATTCTGGCAGCAGGCTTGAATATAGTTGTCAAGTCATCAGTGGGAAGTTCTTTCTTCAAGAATCAGTGTTTGAGAACGAAGAAGGAAGCTTCAAATATCACCACTTAG

Coding sequence (CDS)

ATGGGATCAGCAGAGAAGTCAGGTTTTGAAGGAATCATAAAGTTCGATGGGGCCAATTTCGAATATTGGAAGATGCAGATTAAGGATTACTTGACCTGCAAGAAGTTGAATAAAGCTTTAAAGGAACGACCAGCAGGGATGAAAGATGAAGATTGGGTGGAGACGAATGAACAGGCAGTTGCCTTTATCAGATTGTGTTTGTTGATGAATGTGGCAAGTCTCGTAGCAAACGAAACGACAGCAATAGATCTGATGAAAGCACTGGAGAATAGGTATGAGAAACCCTCAGCTAATAATAAGGTATATCTCGTAAGGAGGTTCTTTAACATTCAAATGGAAGAGAATACTTCTGTCAATTCCCACATAAATGAGGTCACAAAATTAATCAATCAATTGGCATCAGTTAAGATTACTTTTAGTGACGAAGTGAATGTTATTCAGTTGCTAACATCTTTACCTGAAAGTTGGGAAACGATGAAGACAGCAGTGTCCAATTCGTTAGGAGACAAATCTTTGAAATTTTCAGAAATTTGTGATGCGACAATTGCTGAAGAAATTCGCAGAAAGGGGAGTGGAAAAAAGTCTACTTCCGTACAAGGCTCAGCATTGGCTGTCGAAAAAGGTAAAGAGAAAGTTGCGTCTAATGACAGGCAGCAGAAGCATAGATCCAAGTTGGTGGCAATTGGCCACAGAAGATCTACAGTTTACACGTCGCAATTGAGTGTTGCCAGAGGATCATTGAAACAGTGGATGCAAGTTGCAGATGGTGTCCAAAGAGGTAGGACTAAGCCAGCAACGAAGACAACTAGAACAGATCAGAAGGATCTGCCATCAATTCAGATACAACAATTGGGAAGTCAAAAAACGATAACAAGTTCTTTAGGTTGTCTGGGATTATCTCCAGTTGTCAGACGAAAGGGTGAATTGATGAAGTCGCGTCAGCGAAGAGTTGCATCAGAGAAGATAAACTCAGTAGGTGCTGAGGTAAAGAATGAAGTTTCAATTCTGGCAGCAGGCTTGAATATAGTTGTCAAGTCATCAGTGGGAAGTTCTTTCTTCAAGAATCAGTGTTTGAGAACGAAGAAGGAAGCTTCAAATATCACCACTTAG

Protein sequence

MGSAEKSGFEGIIKFDGANFEYWKMQIKDYLTCKKLNKALKERPAGMKDEDWVETNEQAVAFIRLCLLMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSHINEVTKLINQLASVKITFSDEVNVIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDATIAEEIRRKGSGKKSTSVQGSALAVEKGKEKVASNDRQQKHRSKLVAIGHRRSTVYTSQLSVARGSLKQWMQVADGVQRGRTKPATKTTRTDQKDLPSIQIQQLGSQKTITSSLGCLGLSPVVRRKGELMKSRQRRVASEKINSVGAEVKNEVSILAAGLNIVVKSSVGSSFFKNQCLRTKKEASNITT

Homology

[Close]

BLAST of Moc11g29830 vs. NCBI nr
Match: RVW41523.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 190.3 bits (482), Expect = 3.0e-44
Identity = 107/212 (50.47%), Postives = 145/212 (68.40%), Query Frame = 0


Query: 4   AEKSG-FEGIIKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAGMKDEDWVETNEQAVA 63
           AE++G   GI KFDG +F YW+MQI+DYL  +KL+   L  +P  MK E+W   + Q + 
Sbjct: 2   AEEAGKASGIEKFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLG 61

Query: 64  FIRLCLLMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSH 123
            IRL L  +VA  V  E T  DLMKAL   YEKPSANNKV+L+++ FN++M EN SV  H
Sbjct: 62  VIRLTLSRSVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQH 121

Query: 124 INEVTKLINQLASVKITFSDEVNVIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAT 183
           +NE   + NQL+SV+I F DE+  + +L SLP SWE M+ AVSNS G + LK+++I D  
Sbjct: 122 LNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLI 181

Query: 184 IAEEIRRKGSGKKSTSVQGSALAVE-KGKEKV 213
           +AEEIRR+ +G+  TS  GSAL +E +G+E+V
Sbjct: 182 LAEEIRRRDAGE--TSGSGSALNLETRGREEV 211

[Close]

BLAST of Moc11g29830 vs. NCBI nr
Match: RVW60263.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 190.3 bits (482), Expect = 3.0e-44
Identity = 107/212 (50.47%), Postives = 145/212 (68.40%), Query Frame = 0


Query: 4   AEKSG-FEGIIKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAGMKDEDWVETNEQAVA 63
           AE++G   GI KFDG +F YW+MQI+DYL  +KL+   L  +P  MK E+W   + Q + 
Sbjct: 2   AEEAGKASGIEKFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLG 61

Query: 64  FIRLCLLMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSH 123
            IRL L  +VA  V  E T  DLMKAL   YEKPSANNKV+L+++ FN++M EN SV  H
Sbjct: 62  VIRLTLSRSVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQH 121

Query: 124 INEVTKLINQLASVKITFSDEVNVIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAT 183
           +NE   + NQL+SV+I F DE+  + +L SLP SWE M+ AVSNS G + LK+++I D  
Sbjct: 122 LNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLI 181

Query: 184 IAEEIRRKGSGKKSTSVQGSALAVE-KGKEKV 213
           +AEEIRR+ +G+  TS  GSAL +E +G+E+V
Sbjct: 182 LAEEIRRRDAGE--TSGSGSALNLETRGREEV 211

[Close]

BLAST of Moc11g29830 vs. NCBI nr
Match: KAE8691144.1 (hypothetical protein F3Y22_tig00110893pilonHSYRG01319 [Hibiscus syriacus])

HSP 1 Score: 189.5 bits (480), Expect = 5.2e-44
Identity = 107/223 (47.98%), Postives = 146/223 (65.47%), Query Frame = 0


Query: 4   AEKSGFEGIIKFDGANFEYWKMQIKDYLTCKKLNKALK-ERPAGMKDEDWVETNEQAVAF 63
           A   G   I KFDGANF +WKMQI+D+L  K L + L  ++P GMK+EDWV  + QA+  
Sbjct: 2   AADEGKVKIEKFDGANFGFWKMQIEDFLYQKNLYQPLSGKQPEGMKNEDWVLLDRQALGV 61

Query: 64  IRLCLLMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSHI 123
           IRL L  NVA  +A E T   LM AL + YEKPSA+NKV+L+RR FN++M E  SV  H+
Sbjct: 62  IRLTLSCNVAFNIAKEKTTAGLMAALSSMYEKPSASNKVHLMRRLFNLRMAEVASVAQHL 121

Query: 124 NEVTKLINQLASVKITFSDEVNVIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDATI 183
           NE+  +  QL+SV+I F DEV  + LL+SLP+SW    TAVS+S G+  LKF ++ D  +
Sbjct: 122 NELNTITTQLSSVEIEFDDEVRALILLSSLPDSWNATATAVSSSSGNSKLKFDDVRDLVL 181

Query: 184 AEEIRRKGSGKKSTSVQGSALAVEKGKEKVASNDRQQKHRSKL 226
           +EEIRR+ SG+ STS+     + E+  E+ ++  R +  R KL
Sbjct: 182 SEEIRRRESGEASTSLALHTESRERTSERNSNRGRSKSRRGKL 224

[Close]

BLAST of Moc11g29830 vs. NCBI nr
Match: RVW25839.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 189.1 bits (479), Expect = 6.7e-44
Identity = 108/225 (48.00%), Postives = 147/225 (65.33%), Query Frame = 0


Query: 4   AEKSG-FEGIIKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAGMKDEDWVETNEQAVA 63
           AE++G   GI KFDG +F YW+MQI+DYL  +KL+   L  +P  MK E+W   + Q + 
Sbjct: 2   AEEAGKASGIEKFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLG 61

Query: 64  FIRLCLLMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSH 123
            IRL L  +VA  V  E T  DLMKAL   YEKPSANNKV+L+++ FN++M EN SV  H
Sbjct: 62  VIRLTLSRSVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQH 121

Query: 124 INEVTKLINQLASVKITFSDEVNVIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAT 183
           +NE   + NQL+SV+I F DE+  + +L SLP SWE M+ AVSNS+G + LK+++I D  
Sbjct: 122 LNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSIGKEKLKYNDIRDLI 181

Query: 184 IAEEIRRKGSGKKSTSVQGSALAVE---KGKEKVASNDRQQKHRS 224
           +AEEIRR+ +G+  TS  GSAL +E   +G  K ++  R     S
Sbjct: 182 LAEEIRRRDAGE--TSGSGSALNLETRGRGNNKNSNQGRSNSRNS 224

[Close]

BLAST of Moc11g29830 vs. NCBI nr
Match: RVW73393.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 188.3 bits (477), Expect = 1.1e-43
Identity = 104/205 (50.73%), Postives = 139/205 (67.80%), Query Frame = 0


Query: 4   AEKSG-FEGIIKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAGMKDEDWVETNEQAVA 63
           AE++G   GI KFDG +F YW+MQI+DYL  +KL+   L  +P  MK E+W   + Q + 
Sbjct: 2   AEEAGKASGIEKFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLG 61

Query: 64  FIRLCLLMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSH 123
            IRL L  +VA  V  E T  DLMKAL   YEKPSANNKV+L+++ FN++M EN SV  H
Sbjct: 62  VIRLTLSRSVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQH 121

Query: 124 INEVTKLINQLASVKITFSDEVNVIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAT 183
           +NE   + NQL+SV+I F DE+  + +L SLP SWE M+ AVSNS G + LK+++I D  
Sbjct: 122 LNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLI 181

Query: 184 IAEEIRRKGSGKKSTSVQGSALAVE 207
           +AEEIRR+ +G+  TS  GSAL +E
Sbjct: 182 LAEEIRRRDAGE--TSGSGSALNLE 204

[Close]

BLAST of Moc11g29830 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.3e-18
Identity = 70/226 (30.97%), Postives = 119/226 (52.65%), Query Frame = 0


Query: 12  IIKFDGAN-FEYWKMQIKDYLTCKKLNKAL---KERPAGMKDEDWVETNEQAVAFIRLCL 71
           + KF+G N F  W+ +++D L  + L+K L    ++P  MK EDW + +E+A + IRL L
Sbjct: 8   VAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIRLHL 67

Query: 72  LMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSHINEVTK 131
             +V + + +E TA  +   LE+ Y   +  NK+YL ++ + + M E T+  SH+N    
Sbjct: 68  SDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNG 127

Query: 132 LINQLASVKITFSDEVNVIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDATIAEEIR 191
           LI QLA++ +   +E   I LL SLP S++ + T + +  G  +++  ++  A +  E  
Sbjct: 128 LITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILH--GKTTIELKDVTSALLLNEKM 187

Query: 192 RKGSGKKSTSVQGSALAVE-KGKEKVASNDR--------QQKHRSK 225
           R     K    QG AL  E +G+    S++         + K+RSK
Sbjct: 188 R-----KKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSK 226

[Close]

BLAST of Moc11g29830 vs. ExPASy TrEMBL
Match: A0A7N2KY95 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 6.6e-45
Identity = 109/225 (48.44%), Postives = 148/225 (65.78%), Query Frame = 0


Query: 4   AEKSG-FEGIIKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAGMKDEDWVETNEQAVA 63
           AE++G   GI KFDG +F YW+MQI+DYL  +KL+   L  +P  MK E+W   + Q + 
Sbjct: 2   AEEAGKASGIEKFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPEAMKAEEWALLDRQVLG 61

Query: 64  FIRLCLLMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSH 123
            IRL L  +VA  V  E T  DLMKAL   YEKPSANNKV+L+++ FN++M EN SV  H
Sbjct: 62  VIRLTLSRSVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQH 121

Query: 124 INEVTKLINQLASVKITFSDEVNVIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAT 183
           +NE   + NQL+SVKI F DE+  + +L SLP SWE M+ AVSNS G + LK+++I D  
Sbjct: 122 LNEFNSITNQLSSVKIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLI 181

Query: 184 IAEEIRRKGSGKKSTSVQGSALAVE---KGKEKVASNDRQQKHRS 224
           +AEEIRR+ +G+ S S  GSAL +E   +G  + ++ DR +   S
Sbjct: 182 LAEEIRRRDAGESSGS--GSALNLEIRGRGNNRNSNRDRSKSRNS 224

[Close]

BLAST of Moc11g29830 vs. ExPASy TrEMBL
Match: A0A438E1E8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2374 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.5e-44
Identity = 107/212 (50.47%), Postives = 145/212 (68.40%), Query Frame = 0


Query: 4   AEKSG-FEGIIKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAGMKDEDWVETNEQAVA 63
           AE++G   GI KFDG +F YW+MQI+DYL  +KL+   L  +P  MK E+W   + Q + 
Sbjct: 2   AEEAGKASGIEKFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLG 61

Query: 64  FIRLCLLMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSH 123
            IRL L  +VA  V  E T  DLMKAL   YEKPSANNKV+L+++ FN++M EN SV  H
Sbjct: 62  VIRLTLSRSVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQH 121

Query: 124 INEVTKLINQLASVKITFSDEVNVIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAT 183
           +NE   + NQL+SV+I F DE+  + +L SLP SWE M+ AVSNS G + LK+++I D  
Sbjct: 122 LNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLI 181

Query: 184 IAEEIRRKGSGKKSTSVQGSALAVE-KGKEKV 213
           +AEEIRR+ +G+  TS  GSAL +E +G+E+V
Sbjct: 182 LAEEIRRRDAGE--TSGSGSALNLETRGREEV 211

[Close]

BLAST of Moc11g29830 vs. ExPASy TrEMBL
Match: A0A438FJS0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4031 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.5e-44
Identity = 107/212 (50.47%), Postives = 145/212 (68.40%), Query Frame = 0


Query: 4   AEKSG-FEGIIKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAGMKDEDWVETNEQAVA 63
           AE++G   GI KFDG +F YW+MQI+DYL  +KL+   L  +P  MK E+W   + Q + 
Sbjct: 2   AEEAGKASGIEKFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLG 61

Query: 64  FIRLCLLMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSH 123
            IRL L  +VA  V  E T  DLMKAL   YEKPSANNKV+L+++ FN++M EN SV  H
Sbjct: 62  VIRLTLSRSVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQH 121

Query: 124 INEVTKLINQLASVKITFSDEVNVIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAT 183
           +NE   + NQL+SV+I F DE+  + +L SLP SWE M+ AVSNS G + LK+++I D  
Sbjct: 122 LNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLI 181

Query: 184 IAEEIRRKGSGKKSTSVQGSALAVE-KGKEKV 213
           +AEEIRR+ +G+  TS  GSAL +E +G+E+V
Sbjct: 182 LAEEIRRRDAGE--TSGSGSALNLETRGREEV 211

[Close]

BLAST of Moc11g29830 vs. ExPASy TrEMBL
Match: A0A6A2ZGN6 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110893pilonHSYRG01319 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.5e-44
Identity = 107/223 (47.98%), Postives = 146/223 (65.47%), Query Frame = 0


Query: 4   AEKSGFEGIIKFDGANFEYWKMQIKDYLTCKKLNKALK-ERPAGMKDEDWVETNEQAVAF 63
           A   G   I KFDGANF +WKMQI+D+L  K L + L  ++P GMK+EDWV  + QA+  
Sbjct: 2   AADEGKVKIEKFDGANFGFWKMQIEDFLYQKNLYQPLSGKQPEGMKNEDWVLLDRQALGV 61

Query: 64  IRLCLLMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSHI 123
           IRL L  NVA  +A E T   LM AL + YEKPSA+NKV+L+RR FN++M E  SV  H+
Sbjct: 62  IRLTLSCNVAFNIAKEKTTAGLMAALSSMYEKPSASNKVHLMRRLFNLRMAEVASVAQHL 121

Query: 124 NEVTKLINQLASVKITFSDEVNVIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDATI 183
           NE+  +  QL+SV+I F DEV  + LL+SLP+SW    TAVS+S G+  LKF ++ D  +
Sbjct: 122 NELNTITTQLSSVEIEFDDEVRALILLSSLPDSWNATATAVSSSSGNSKLKFDDVRDLVL 181

Query: 184 AEEIRRKGSGKKSTSVQGSALAVEKGKEKVASNDRQQKHRSKL 226
           +EEIRR+ SG+ STS+     + E+  E+ ++  R +  R KL
Sbjct: 182 SEEIRRRESGEASTSLALHTESRERTSERNSNRGRSKSRRGKL 224

[Close]

BLAST of Moc11g29830 vs. ExPASy TrEMBL
Match: A0A438CRS1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4222 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 3.3e-44
Identity = 108/225 (48.00%), Postives = 147/225 (65.33%), Query Frame = 0


Query: 4   AEKSG-FEGIIKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAGMKDEDWVETNEQAVA 63
           AE++G   GI KFDG +F YW+MQI+DYL  +KL+   L  +P  MK E+W   + Q + 
Sbjct: 2   AEEAGKASGIEKFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLG 61

Query: 64  FIRLCLLMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSH 123
            IRL L  +VA  V  E T  DLMKAL   YEKPSANNKV+L+++ FN++M EN SV  H
Sbjct: 62  VIRLTLSRSVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQH 121

Query: 124 INEVTKLINQLASVKITFSDEVNVIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAT 183
           +NE   + NQL+SV+I F DE+  + +L SLP SWE M+ AVSNS+G + LK+++I D  
Sbjct: 122 LNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSIGKEKLKYNDIRDLI 181

Query: 184 IAEEIRRKGSGKKSTSVQGSALAVE---KGKEKVASNDRQQKHRS 224
           +AEEIRR+ +G+  TS  GSAL +E   +G  K ++  R     S
Sbjct: 182 LAEEIRRRDAGE--TSGSGSALNLETRGRGNNKNSNQGRSNSRNS 224

[Close]

BLAST of Moc11g29830 vs. TAIR 10
Match: AT3G29785.1 (unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 6.1e-11
Identity = 35/88 (39.77%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 14  KFDGANFEYWKMQIKDYLTCKKLNKALKERPAGMKDEDWVETNEQAVAFIRLCLLMNVAS 73
           K DG ++ + +M+I+DYL  KKL++ L ++   M  +DW     Q +  IRL +  N+A 
Sbjct: 8   KVDGTSYSFCRMKIEDYLYGKKLHQPLGKKVETMSQDDWNILYRQVLDVIRLTISKNIAH 67

Query: 74  LVANETTAIDLMKALENRYEKPSANNKV 102
            VA E +   LMK L + Y+KPS NN V
Sbjct: 68  NVAKEKSPDGLMKVLSDIYKKPSTNNTV 95

The following BLAST results are available for this feature:

BLAST of Moc11g29830 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW41523.1	3.0e-44	50.47	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW60263.1	3.0e-44	50.47	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
KAE8691144.1	5.2e-44	47.98	hypothetical protein F3Y22_tig00110893pilonHSYRG01319 [Hibiscus syriacus]	[more]
RVW25839.1	6.7e-44	48.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW73393.1	1.1e-43	50.73	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Moc11g29830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.3e-18	30.97	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Moc11g29830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7N2KY95	6.6e-45	48.44	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A438E1E8	1.5e-44	50.47	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438FJS0	1.5e-44	50.47	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A6A2ZGN6	2.5e-44	47.98	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110893pilon...	[more]
A0A438CRS1	3.3e-44	48.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of Moc11g29830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29785.1	6.1e-11	39.77	unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 52..190 e-value: 1.5E-29 score: 102.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..221
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 11..224
None	No IPR available	PANTHER	PTHR34676:SF1	ZINC FINGER, CCHC-TYPE, TUBBY C-TERMINAL-LIKE DOMAIN PROTEIN-RELATED	coord: 11..224

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g29830.1	Moc11g29830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0043167	ion binding
molecular_function	GO:0097159	organic cyclic compound binding