Moc11g29740 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g29740
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr11: 21780295 .. 21782950 (-)
RNA-Seq Expression	Moc11g29740
Synteny	Moc11g29740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGAAATGAAAACAAGTCTGCTTCCACTTCTAGTATGGAGAAATTTGTGGAATTAGCATTGGCAGTTAAGACAGAGGCAAATGGAAGATGGATTATGGTAAACAGTAGAGACATTGCCACAGGAGTGGGAGTGGCGAGATTGAATGATTTTATTGCCATAAGAAAGGTCACTTCAAGAGACACTGTAGGAAGCTCAAAGAGGATTAAAAAAAGGAAATCTCTACAAATGTTTTGTTAGATGACATGTTGTTAGCATGCGTTGATATAGGAATGTGTAGTGGACAGTGCACCCTTGGTGCACGTATCTTCATATGGGAATTGGTTCACATCCTTCACTGCAGACAATCTTGGCATGGTGAGGATAAGAAATGGGAGACTCTCCAATCAAAAGCATTGGGGATGTTCATTTGAAGACTAATAGTGGGACTGACTTAGTTTTACTTGATGTCAGATATGTACCTAGTTTTTAGAATGAATCTAATATTTGCAGGGAAGTTGAATGACGAAAGCTATAGAAGCGAGTTTTTGTGGAACACGTGGAAGCTCATAAGGGGATCCAAGGTAGTGCCTGTTGGCCACATAGAAGCTGCAGTTTATGTGTCGAGGTTTAGCATTGCCAAAGGATCAGAGAGAGAGGTTATGCACAAAGCTGCCGATGGTTCAAAGGGAGACATGATAAAACTAGAAGCACTGATAGCCAAAACAGATGAGGAGAATATGCCATCAGTTCAAGTTCAACTGCTAGGAAGTAGAGAAAATAAGAAGAAGAATAGTCTGAATAGCTGTTCAGTAGATTGTTGGATTTTGGCACCATTTGTCAGACGATTTGGCGAGCGGATGAAGTCGCATAGGCAAAAGAGTGCATCAAGGACAATGATTTCCCTTGTTTACAATGGTAAAAAGAAACTAATGTGGTGCTGTTTTCTATCGTTTTACACTCAAAAATTGTATTTTAAGCTTACTTCAGTGTCCAAAATCTTTCATTCGGAGTTATTTTAGGTTATACATGCATATAGAACATTTTTACATAATTTAAAGTTGATTTCTAATGGAAATTATGATTTTGTGTAAAACATTCGAGCTTGGCACCTGACGCCTTGCCCAATTCAGAAAATGCCCTTAATATGAAACGCGAGTTTTGGTATATTTAGAAGTCTCTCCCAGTCTATGGAAGAAGGCTAATTCAACAACAAACCAACTTTAAAATATTTTAAAATGATGGCTCCCCACCAAAGTCTCAACTTCCTAACCGACTTGAAGTCCCTATAAATACAACATATCCTTCACTTCATTCATCATCCAAAGGGATCAAATTTAGCTTTTTACACTCTTGTGTACTCAGCCTATTTCATTTTCCTTTAGCTCTTTAGTTGTTGTTATTTTAAAACTAGTTTATTTAAAGTTCATTCTTTGTTTTTCAGCTTGTTACTCTTCAATGGTAAGTTTTTTATCTTATTAAATTAAAATTGCAGCAAATCATTCATATTCATCTCCCTACTAAGTTTGTAATCACACAAATTTGTGGAATCGATTGAGTATTGCTCCACAGATCTCGAAAGAGAAAGGATTAGGGTCATTCAGGTTACAAACTTCTTAATTACAGCTTGTTCTTATTTTACTCTTCTTACATCATGTATTCCATTTATAACAACGTTCAATTCTGTTTTTTTTCTCTCTAAAGTTATCAGCTAAATTTATTTTCCCAAGCCCAGTTATGGATGATTAGCTAAAGTTTTTAAAAATACAACAAGGTAAAATGTGTTTTTCTCTTCTTTTATCACTTAAGGTTGGTTTATAAAGTTAGAAATTAATTTGGCCAATTAATGTTTTAACCAAACATCAATTCTGAAAAGATTGATATATTTTTACAACTTTAATGATTCTTAACATTGGAGAGAAATACTTTAGACATAAAGATTTCGCTCAAGTAGCCTAGCCATAGGACCTCGACCTAAGGTTACAGTTGGTTTTTATTAAATTAAGTTCAATTTTCTAATAGACATATTAGGGATGAACTTATACCTTAAAAATCACTTAGGAAGATGGCGAAGCTGAACCGATGAAAAATATAGAGAGGCGTCTGGCGCCTAGTTGGAAGTATTTGGTGTATTTTTAGCTAATTCAAAGTAACTGGGCTGAGTTTATTGCATTAAGTCTTAAAATACCAAAATCAACATTATCCTTGATACTTTTTACCAAAAAAAGTTGCAAAAGTCGCCAATCAACATCATTTTTATTAAAAAGGCTTCATTTGTCCCTGAGGATCAATGCTCGGAATACTCATTCTGTTTTACTACTTGTGACGGGTGTACACTTGTGCTCTATCATTTATTTTAAATCCAAAATCCCATACATAGAATGACTATAGTTGGCACTGAGGTCAAATGTGAAGTCTCTAGCTTGGCAACAGACTTGGGTAGGTTGCTCAAATCATTATTGAAGAAGCTTTCCTTAAGGAGTCGTTAAGCGCGATCGAAGAGGGAGACATGGGGGTTTGCTTAGTTCGAGTAGGAGTATGTGGTTATGTATCTTACATTTGGGAGATAAAACCAGGTATGATTGCTCAGTCTCAGGGCAATCACAGATGGAACCTTGGTTTATGCCAAGAAGGAAGTAGAAGCTGTTGGAGTAGTTCGAGTAGAGTCTCTTAA

mRNA sequence

ATGAAAGGAAATGAAAACAAGTCTGCTTCCACTTCTAGTATGGAGAAATTTGTGGAATTAGCATTGGCAGTTAAGACAGAGGCAAATGGAAGATGGATTATGGTAAACAGTAGAGACATTGCCACAGGAGTGGGAGTGGCGAGATTGAATGATTTTATTGCCATAAGAAAGGTCACTTCAAGAGACACTGAATGTGTAGTGGACAGTGCACCCTTGGTGCACGTATCTTCATATGGGAATTGGTTCACATCCTTCACTGCAGACAATCTTGGCATGGTGAGGATAAGAAATGGGAGACTCTCCAATCAAAAGCATTGGGGATGGAAGTTGAATGACGAAAGCTATAGAAGCGAGTTTTTGTGGAACACGTGGAAGCTCATAAGGGGATCCAAGGTAGTGCCTGTTGGCCACATAGAAGCTGCAGTTTATGTGTCGAGGTTTAGCATTGCCAAAGGATCAGAGAGAGAGGTTATGCACAAAGCTGCCGATGGTTCAAAGGGAGACATGATAAAACTAGAAGCACTGATAGCCAAAACAGATGAGGAGAATATGCCATCAGTTCAAGTTCAACTGCTAGGAAGTAGAGAAAATAAGAAGAAGAATAGTCTGAATAGCTGTTCAGTAGATTGTTGGATTTTGGCACCATTTGTCAGACGATTTGGCGAGCGGATGAAGTCGCATAGGCAAAAGAGTGCATCAAGGACAATGATTTCCCTTGTTTACAATGGTATGATTGCTCAGTCTCAGGGCAATCACAGATGGAACCTTGGTTTATGCCAAGAAGGAAGTAGAAGCTGTTGGAGTAGTTCGAGTAGAGTCTCTTAA

Coding sequence (CDS)

ATGAAAGGAAATGAAAACAAGTCTGCTTCCACTTCTAGTATGGAGAAATTTGTGGAATTAGCATTGGCAGTTAAGACAGAGGCAAATGGAAGATGGATTATGGTAAACAGTAGAGACATTGCCACAGGAGTGGGAGTGGCGAGATTGAATGATTTTATTGCCATAAGAAAGGTCACTTCAAGAGACACTGAATGTGTAGTGGACAGTGCACCCTTGGTGCACGTATCTTCATATGGGAATTGGTTCACATCCTTCACTGCAGACAATCTTGGCATGGTGAGGATAAGAAATGGGAGACTCTCCAATCAAAAGCATTGGGGATGGAAGTTGAATGACGAAAGCTATAGAAGCGAGTTTTTGTGGAACACGTGGAAGCTCATAAGGGGATCCAAGGTAGTGCCTGTTGGCCACATAGAAGCTGCAGTTTATGTGTCGAGGTTTAGCATTGCCAAAGGATCAGAGAGAGAGGTTATGCACAAAGCTGCCGATGGTTCAAAGGGAGACATGATAAAACTAGAAGCACTGATAGCCAAAACAGATGAGGAGAATATGCCATCAGTTCAAGTTCAACTGCTAGGAAGTAGAGAAAATAAGAAGAAGAATAGTCTGAATAGCTGTTCAGTAGATTGTTGGATTTTGGCACCATTTGTCAGACGATTTGGCGAGCGGATGAAGTCGCATAGGCAAAAGAGTGCATCAAGGACAATGATTTCCCTTGTTTACAATGGTATGATTGCTCAGTCTCAGGGCAATCACAGATGGAACCTTGGTTTATGCCAAGAAGGAAGTAGAAGCTGTTGGAGTAGTTCGAGTAGAGTCTCTTAA

Protein sequence

MKGNENKSASTSSMEKFVELALAVKTEANGRWIMVNSRDIATGVGVARLNDFIAIRKVTSRDTECVVDSAPLVHVSSYGNWFTSFTADNLGMVRIRNGRLSNQKHWGWKLNDESYRSEFLWNTWKLIRGSKVVPVGHIEAAVYVSRFSIAKGSEREVMHKAADGSKGDMIKLEALIAKTDEENMPSVQVQLLGSRENKKKNSLNSCSVDCWILAPFVRRFGERMKSHRQKSASRTMISLVYNGMIAQSQGNHRWNLGLCQEGSRSCWSSSSRVS

Homology

[Close]

BLAST of Moc11g29740 vs. NCBI nr
Match: XP_022152155.1 (cinnamoyl-CoA reductase-like SNL6 [Momordica charantia])

HSP 1 Score: 68.9 bits (167), Expect = 7.5e-08
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 132 VVPVGHIEAAVYVSRFSIAKGSEREVMHK-AADGSKGDMIKLEALIAKTDEENMPSVQVQ 191
           VV  GH  + VYVS F +AKGS R+ MHK  A GS+  + +  AL+AKTD++N+PS QV+
Sbjct: 2   VVATGHKRSYVYVSEFEVAKGSLRQTMHKVVAYGSRRYLRRPAALMAKTDQKNLPSPQVK 61

Query: 192 LLGSRENKKKNSLNSCSVDCWILAPFVRRFGERMKSHRQKSA 233
            L S +   +N +        +    VR  GE +KSHR+ SA
Sbjct: 62  QLRSTKKGNENLIGH-----RVHTSAVRCLGELVKSHRRISA 98

[Close]

BLAST of Moc11g29740 vs. NCBI nr
Match: TXG69536.1 (hypothetical protein EZV62_004471 [Acer yangbiense])

HSP 1 Score: 59.7 bits (143), Expect = 4.6e-05
Identity = 69/245 (28.16%), Postives = 106/245 (43.27%), Query Frame = 0


Query: 58  VTSRDTECVVDSAPLVHVSSYGNWFTSFTADNLGMVRIRNGRLS---------------- 117
           +TS+DT  V+DS    HV+S  + FTS+T D+ G VR+ N  +S                
Sbjct: 78  ITSQDTYWVIDSGASFHVTSRRDLFTSYTDDDYGQVRMGNDHVSKIVGMGEICLEISTNC 137

Query: 118 -----NQKH---------WGWKLNDESYRSEFLWNTWKLIRGSKVVPVGHIEAAVYVSRF 177
                N +H             L+DE Y++EF    WKL + S V+  G  E+ +Y ++ 
Sbjct: 138 RLVLKNVRHVPDMRLNLISAGVLDDEGYKNEFYSGKWKLSKRSLVLARGKKESTLYSTQ- 197

Query: 178 SIAKGSEREVMHKAADGSKGDMIKLEALIAKTDEENMPSVQVQLLGSRE---NKKKNSLN 237
             AK S R+V   + + S      +E    +    +M    +Q L  RE     K  SL 
Sbjct: 198 --AKVSGRDVNTLSNNSS------IELWHKRLG--HMSEKGLQTLARREVLIEVKGTSLK 257

Query: 238 SCSVDCWILAPFVRRFG-ERMKSHRQKSASRTMISLVYNGMIAQSQGNHRWNLGLCQEGS 269
            C VDC  LA    R   ++  +HR+ +    + S V   M  +S G  R+ +    + S
Sbjct: 258 GC-VDC--LAGKQHRVSFQKNSTHRKPNILDIVHSDVCGPMPTKSHGGARFFVTFIDDHS 308

[Close]

BLAST of Moc11g29740 vs. NCBI nr
Match: KAF7127171.1 (hypothetical protein RHSIM_Rhsim11G0049900 [Rhododendron simsii])

HSP 1 Score: 55.8 bits (133), Expect = 6.6e-04
Identity = 34/101 (33.66%), Postives = 53/101 (52.48%), Query Frame = 0


Query: 58  VTSRDTECVVDSAPLVHVSSYGNWFTSFTADNLGMVRIRNGRLSNQKHWGW------KLN 117
           + S+DT  V+DS    HV+S  ++FTS+   + G VR+RN  + +            KL+
Sbjct: 166 LVSQDTNWVIDSGVSFHVTSRADFFTSYNEGDFGCVRMRNQDVRHVLDIRLNLISIEKLD 225

Query: 118 DESYRSEFLWNTWKLIRGSKVVPVGHIEAAVYVSRFSIAKG 153
           DE Y + F    WKL +GS VV   +   ++Y  +  I+KG
Sbjct: 226 DEGYNNHFGNGKWKLTKGSLVVAQWNKTYSLYTMKEKISKG 266

[Close]

BLAST of Moc11g29740 vs. ExPASy TrEMBL
Match: A0A6J1DD48 (cinnamoyl-CoA reductase-like SNL6 OS=Momordica charantia OX=3673 GN=LOC111019944 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-08
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 132 VVPVGHIEAAVYVSRFSIAKGSEREVMHK-AADGSKGDMIKLEALIAKTDEENMPSVQVQ 191
           VV  GH  + VYVS F +AKGS R+ MHK  A GS+  + +  AL+AKTD++N+PS QV+
Sbjct: 2   VVATGHKRSYVYVSEFEVAKGSLRQTMHKVVAYGSRRYLRRPAALMAKTDQKNLPSPQVK 61

Query: 192 LLGSRENKKKNSLNSCSVDCWILAPFVRRFGERMKSHRQKSA 233
            L S +   +N +        +    VR  GE +KSHR+ SA
Sbjct: 62  QLRSTKKGNENLIGH-----RVHTSAVRCLGELVKSHRRISA 98

[Close]

BLAST of Moc11g29740 vs. ExPASy TrEMBL
Match: A0A5C7IM26 (Integrase catalytic domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_004471 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-05
Identity = 69/245 (28.16%), Postives = 106/245 (43.27%), Query Frame = 0


Query: 58  VTSRDTECVVDSAPLVHVSSYGNWFTSFTADNLGMVRIRNGRLS---------------- 117
           +TS+DT  V+DS    HV+S  + FTS+T D+ G VR+ N  +S                
Sbjct: 78  ITSQDTYWVIDSGASFHVTSRRDLFTSYTDDDYGQVRMGNDHVSKIVGMGEICLEISTNC 137

Query: 118 -----NQKH---------WGWKLNDESYRSEFLWNTWKLIRGSKVVPVGHIEAAVYVSRF 177
                N +H             L+DE Y++EF    WKL + S V+  G  E+ +Y ++ 
Sbjct: 138 RLVLKNVRHVPDMRLNLISAGVLDDEGYKNEFYSGKWKLSKRSLVLARGKKESTLYSTQ- 197

Query: 178 SIAKGSEREVMHKAADGSKGDMIKLEALIAKTDEENMPSVQVQLLGSRE---NKKKNSLN 237
             AK S R+V   + + S      +E    +    +M    +Q L  RE     K  SL 
Sbjct: 198 --AKVSGRDVNTLSNNSS------IELWHKRLG--HMSEKGLQTLARREVLIEVKGTSLK 257

Query: 238 SCSVDCWILAPFVRRFG-ERMKSHRQKSASRTMISLVYNGMIAQSQGNHRWNLGLCQEGS 269
            C VDC  LA    R   ++  +HR+ +    + S V   M  +S G  R+ +    + S
Sbjct: 258 GC-VDC--LAGKQHRVSFQKNSTHRKPNILDIVHSDVCGPMPTKSHGGARFFVTFIDDHS 308

[Close]

BLAST of Moc11g29740 vs. ExPASy TrEMBL
Match: A0A438BLS4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_802 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.3e-04
Identity = 28/93 (30.11%), Postives = 51/93 (54.84%), Query Frame = 0


Query: 61  RDTECVVDSAPLVHVSSYGNWFTSFTADNLGMVRIRNGRLSNQKHWGWKLNDESYRSEFL 120
           ++T  V+DS   +H +   ++FTS+T+ + G VR+ N   +       KL+DE + + F 
Sbjct: 185 QETSWVIDSGVSIHATPRKDFFTSYTSGDFGSVRMGNNGSAKAIR---KLDDEGFYNTFR 244

Query: 121 WNTWKLIRGSKVVPVGHIEAAVYVSRFSIAKGS 154
            + WKL RGS V+  G+   ++Y+ +  +   S
Sbjct: 245 DSQWKLTRGSMVIAKGNKSCSLYLMQARVIDSS 274

The following BLAST results are available for this feature:

BLAST of Moc11g29740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152155.1	7.5e-08	43.14	cinnamoyl-CoA reductase-like SNL6 [Momordica charantia]	[more]
TXG69536.1	4.6e-05	28.16	hypothetical protein EZV62_004471 [Acer yangbiense]	[more]
KAF7127171.1	6.6e-04	33.66	hypothetical protein RHSIM_Rhsim11G0049900 [Rhododendron simsii]	[more]

BLAST of Moc11g29740 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g29740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DD48	3.7e-08	43.14	cinnamoyl-CoA reductase-like SNL6 OS=Momordica charantia OX=3673 GN=LOC111019944...	[more]
A0A5C7IM26	2.2e-05	28.16	Integrase catalytic domain-containing protein OS=Acer yangbiense OX=1000413 GN=E...	[more]
A0A438BLS4	9.3e-04	30.11	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of Moc11g29740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g29740.1	Moc11g29740.1	mRNA