Moc11g29580 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g29580
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CACTA en-spm transposon protein
Location	chr11: 21614325 .. 21615516 (-)
RNA-Seq Expression	Moc11g29580
Synteny	Moc11g29580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACCGTAGGGATGAGAGTTCACTTCACGAGAGGGTCGACAGCGACGGAGAAGATCGACGGCAACAAAGTTGCCGTGAATAGTTCGCTGGAGATGGATATGATGACGGCTAGGGTTTGTGAAACTAGGTTTATTTCCTGACGGCTAGGGTTTTGAAAAATATGATTTATTTCTGAAAGCTCTGATACCATGAAGTTTTATGAGAAAGTTTTTCTTATTTTTCTCAAGACTATAGAATGAAAAATATATACAAGTTTACCTTCAATCAAAAAACTAGAAATTAGGTATCAATCTAGATCTACAAGGAAAACCTAAATCACATAGTATACAAGGAAATAAATTTAAAGTAATTTCTCCTAAATTTCAGCTTGATTTTCTACACTACCTGAGTTATCTCACACCTGAGATTGCATGCAACAATCCTCCGTAGCGGTTGTTGGCAAAACCAGACGATTGGAACATGCTGTGCGCTAGATGGGAGACAGATGAGTGGAAGGTAATTTACGAATATAACTTATACTTTTTTTTTAGTATTTATATTCAATATATATTCTCATTTAAGTTTTCTTTAGTTAGCAAAAATCTGAGACCAAAAAACGCAACAGGGCGATGATGTCATTCAACCATCTTGCGGGGCCGAAGGCGTTTGCTATTATTGCAAAGGAAAAGGTACAATGCAATAATATTTTTTTACCCATATATTTATATTACTTAAGATCGATTATTAACAATTATGTATTATCAATTGTAGAAAGAAGAAGAGAGAGGTGACAACTTTTCTGAAATCGATTTGTTCAGGGAGATAAGATATTCTGACACTAAAGGTTGGGTCGAAAGAGCGGAGACAGCTTACGTAAGTTTACGAATCTTATAACAATTAACTTCAAATTACGCATTGAATTTTATGTGTAAACATTTTGTTCTTTTTAAAATATGTATGCAGCTAGACATGATGCGTGTTAGAGAAGCATCTATGGAAAACGGAGGTGAACCGATACAAGACCCAGAAGTATTGGAGACAGTTCTTGGTTATCGTTCGGGATACGTTAAGGGTGCTGGTTGGGGCCCAAAACCAAAGTCTCGTAGAGGTTCTTCTTCAAGTGTAGCATCAACACAGCGGGAAGAAGAGCTATCACAAGAAATATGTACTCTAAAAGAAGAATTTCAGGACCGTCTCAAAGTGTTTTAG

mRNA sequence

ATGAAGACCGTAGGGATGAGAGTTCACTTCACGAGAGGGTCGACAGCGACGGAGAAGATCGACGGCAACAAAGTTGCCGTGAATAGTTCGCTGGAGATGGATATGATGACGGCTAGGCGGTTGTTGGCAAAACCAGACGATTGGAACATGCTGTGCGCTAGATGGGAGACAGATGAGTGGAAGCAAAAATCTGAGACCAAAAAACGCAACAGGGCGATGATGTCATTCAACCATCTTGCGGGGCCGAAGGCGTTTGCTATTATTGCAAAGGAAAAGAAAGAAGAAGAGAGAGGTGACAACTTTTCTGAAATCGATTTGTTCAGGGAGATAAGATATTCTGACACTAAAGGTTGGGTCGAAAGAGCGGAGACAGCTTACCTAGACATGATGCGTGTTAGAGAAGCATCTATGGAAAACGGAGGTGAACCGATACAAGACCCAGAAGTATTGGAGACAGTTCTTGGTTATCGTTCGGGATACGTTAAGGGTGCTGGTTGGGGCCCAAAACCAAAGTCTCGTAGAGGTTCTTCTTCAAGTGTAGCATCAACACAGCGGGAAGAAGAGCTATCACAAGAAATATGTACTCTAAAAGAAGAATTTCAGGACCGTCTCAAAGTGTTTTAG

Coding sequence (CDS)

ATGAAGACCGTAGGGATGAGAGTTCACTTCACGAGAGGGTCGACAGCGACGGAGAAGATCGACGGCAACAAAGTTGCCGTGAATAGTTCGCTGGAGATGGATATGATGACGGCTAGGCGGTTGTTGGCAAAACCAGACGATTGGAACATGCTGTGCGCTAGATGGGAGACAGATGAGTGGAAGCAAAAATCTGAGACCAAAAAACGCAACAGGGCGATGATGTCATTCAACCATCTTGCGGGGCCGAAGGCGTTTGCTATTATTGCAAAGGAAAAGAAAGAAGAAGAGAGAGGTGACAACTTTTCTGAAATCGATTTGTTCAGGGAGATAAGATATTCTGACACTAAAGGTTGGGTCGAAAGAGCGGAGACAGCTTACCTAGACATGATGCGTGTTAGAGAAGCATCTATGGAAAACGGAGGTGAACCGATACAAGACCCAGAAGTATTGGAGACAGTTCTTGGTTATCGTTCGGGATACGTTAAGGGTGCTGGTTGGGGCCCAAAACCAAAGTCTCGTAGAGGTTCTTCTTCAAGTGTAGCATCAACACAGCGGGAAGAAGAGCTATCACAAGAAATATGTACTCTAAAAGAAGAATTTCAGGACCGTCTCAAAGTGTTTTAG

Protein sequence

MKTVGMRVHFTRGSTATEKIDGNKVAVNSSLEMDMMTARRLLAKPDDWNMLCARWETDEWKQKSETKKRNRAMMSFNHLAGPKAFAIIAKEKKEEERGDNFSEIDLFREIRYSDTKGWVERAETAYLDMMRVREASMENGGEPIQDPEVLETVLGYRSGYVKGAGWGPKPKSRRGSSSSVASTQREEELSQEICTLKEEFQDRLKVF

Homology

[Close]

BLAST of Moc11g29580 vs. NCBI nr
Match: XP_038887413.1 (uncharacterized protein LOC120077557 isoform X5 [Benincasa hispida])

HSP 1 Score: 125.2 bits (313), Expect = 6.7e-25
Identity = 65/154 (42.21%), Postives = 99/154 (64.29%), Query Frame = 0


Query: 47  DWNMLCARWETDEWKQKSETKKRNRAMMSFNHLAGPKAFAIIAKEKKEEERGDNFSEIDL 106
           DWN+LC RWET EWK+K+ET K++R+ + + H  G K+F  +  E K +E G +  ++DL
Sbjct: 539 DWNLLCNRWETPEWKKKTETNKKSRSKIPYLHRTGSKSFVQVQSEMKIKE-GRDVDQVDL 598

Query: 107 FREIRYSDTKGWV-ERAETAYLDMMRVREASMENGGEPIQDPEVLETVLGYRSGYVKGAG 166
           FR+  + +  GWV   A+ AYL+M R+ EAS +    P+   EV + VLG+RSGY+KG G
Sbjct: 599 FRQSHFCEKDGWVNNNAKDAYLEMQRLMEASFQEDPTPMSSVEVCKQVLGHRSGYIKGLG 658

Query: 167 WGPKPKSRRGSSSSVASTQREEELSQEICTLKEE 200
             PKP S   SSS  +  Q ++EL +++  +++E
Sbjct: 659 LNPKPSS---SSSVTSYLQDKKELEKKMEKMEDE 688

[Close]

BLAST of Moc11g29580 vs. NCBI nr
Match: XP_038887408.1 (poly [ADP-ribose] polymerase 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 125.2 bits (313), Expect = 6.7e-25
Identity = 65/154 (42.21%), Postives = 99/154 (64.29%), Query Frame = 0


Query: 47  DWNMLCARWETDEWKQKSETKKRNRAMMSFNHLAGPKAFAIIAKEKKEEERGDNFSEIDL 106
           DWN+LC RWET EWK+K+ET K++R+ + + H  G K+F  +  E K +E G +  ++DL
Sbjct: 727 DWNLLCNRWETPEWKKKTETNKKSRSKIPYLHRTGSKSFVQVQSEMKIKE-GRDVDQVDL 786

Query: 107 FREIRYSDTKGWV-ERAETAYLDMMRVREASMENGGEPIQDPEVLETVLGYRSGYVKGAG 166
           FR+  + +  GWV   A+ AYL+M R+ EAS +    P+   EV + VLG+RSGY+KG G
Sbjct: 787 FRQSHFCEKDGWVNNNAKDAYLEMQRLMEASFQEDPTPMSSVEVCKQVLGHRSGYIKGLG 846

Query: 167 WGPKPKSRRGSSSSVASTQREEELSQEICTLKEE 200
             PKP S   SSS  +  Q ++EL +++  +++E
Sbjct: 847 LNPKPSS---SSSVTSYLQDKKELEKKMEKMEDE 876

[Close]

BLAST of Moc11g29580 vs. NCBI nr
Match: XP_038887409.1 (poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 125.2 bits (313), Expect = 6.7e-25
Identity = 65/154 (42.21%), Postives = 99/154 (64.29%), Query Frame = 0


Query: 47  DWNMLCARWETDEWKQKSETKKRNRAMMSFNHLAGPKAFAIIAKEKKEEERGDNFSEIDL 106
           DWN+LC RWET EWK+K+ET K++R+ + + H  G K+F  +  E K +E G +  ++DL
Sbjct: 700 DWNLLCNRWETPEWKKKTETNKKSRSKIPYLHRTGSKSFVQVQSEMKIKE-GRDVDQVDL 759

Query: 107 FREIRYSDTKGWV-ERAETAYLDMMRVREASMENGGEPIQDPEVLETVLGYRSGYVKGAG 166
           FR+  + +  GWV   A+ AYL+M R+ EAS +    P+   EV + VLG+RSGY+KG G
Sbjct: 760 FRQSHFCEKDGWVNNNAKDAYLEMQRLMEASFQEDPTPMSSVEVCKQVLGHRSGYIKGLG 819

Query: 167 WGPKPKSRRGSSSSVASTQREEELSQEICTLKEE 200
             PKP S   SSS  +  Q ++EL +++  +++E
Sbjct: 820 LNPKPSS---SSSVTSYLQDKKELEKKMEKMEDE 849

[Close]

BLAST of Moc11g29580 vs. NCBI nr
Match: XP_022156286.1 (uncharacterized protein LOC111023212 [Momordica charantia])

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-24
Identity = 70/164 (42.68%), Postives = 103/164 (62.80%), Query Frame = 0


Query: 42  LAKPDDWNMLCARWETDEWKQKSETKKRNRAMMSFNHLAGPKAFAIIAKEKKEEERGDNF 101
           L  P+DWN LC RWET EWK+ ++  K+NRA + FNH AG K+F  +  E K +E G + 
Sbjct: 70  LTNPEDWNHLCDRWETPEWKEITKKNKKNRAKLPFNHRAGSKSFLQLQHELKIKE-GSDI 129

Query: 102 SEIDLFREIRYSDTKGWV-ERAETAYLDMMRVREASMENGGEPIQDPEVLETVLGYRSGY 161
             +DLF E  Y++  G V + AE AY +M  + +A  + G EP+  PE    VLG R  +
Sbjct: 130 GPVDLFGESHYNEKDGLVNDNAEDAYENMQNLIKAPTQEGCEPVTQPEACRKVLGDRPDH 189

Query: 162 VKGAGWGPKPK-SRRGSSSSV-ASTQREEELSQEICTLKEEFQD 203
           VKG G+GP+P   +RGSSS+V +ST  E+EL +++  ++ E ++
Sbjct: 190 VKGLGYGPQPTLCKRGSSSNVTSSTLYEKELEKKVEDMEVEMRE 232

[Close]

BLAST of Moc11g29580 vs. NCBI nr
Match: KAA0045598.1 (uncharacterized protein E6C27_scaffold243G001040 [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 2.7e-18
Identity = 59/154 (38.31%), Postives = 91/154 (59.09%), Query Frame = 0


Query: 46  DDWNMLCARWETDEWKQKSETKKRNRAMMSFNHLAGPKAFAIIAKEKKEEERGDNFSEID 105
           +DWNM+C RWETD WK+K ET KR+ + + FNH+ G K+F  +  E K +++G +  EI+
Sbjct: 824 EDWNMMCDRWETDAWKKKRETNKRSHSAVKFNHVTGAKSFLQVRHELK-KKKGYDVDEIE 883

Query: 106 LFREIRYSDTKGW-VERAETAYLDMMRVREASMENGGEPIQDPEVLETVLGYRSGYVKGA 165
           +F E  + + +GW  ++A+ AYL+M R+   S E G + I   +  E VLG RS      
Sbjct: 884 VFHETHFREKEGWNNDKAKDAYLEMQRIIRESTEAGVQTISTAKACEFVLGSRSMQT--- 943

Query: 166 GWGPKPKSRRGSSSSVASTQREEELSQEICTLKE 199
                P+S     S+V+ST+ +E+   E+  LKE
Sbjct: 944 ---VNPRSGESLRSNVSSTREKEK--NEMAYLKE 968

[Close]

BLAST of Moc11g29580 vs. ExPASy TrEMBL
Match: A0A6J1DUH3 (uncharacterized protein LOC111023212 OS=Momordica charantia OX=3673 GN=LOC111023212 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 7.2e-25
Identity = 70/164 (42.68%), Postives = 103/164 (62.80%), Query Frame = 0


Query: 42  LAKPDDWNMLCARWETDEWKQKSETKKRNRAMMSFNHLAGPKAFAIIAKEKKEEERGDNF 101
           L  P+DWN LC RWET EWK+ ++  K+NRA + FNH AG K+F  +  E K +E G + 
Sbjct: 70  LTNPEDWNHLCDRWETPEWKEITKKNKKNRAKLPFNHRAGSKSFLQLQHELKIKE-GSDI 129

Query: 102 SEIDLFREIRYSDTKGWV-ERAETAYLDMMRVREASMENGGEPIQDPEVLETVLGYRSGY 161
             +DLF E  Y++  G V + AE AY +M  + +A  + G EP+  PE    VLG R  +
Sbjct: 130 GPVDLFGESHYNEKDGLVNDNAEDAYENMQNLIKAPTQEGCEPVTQPEACRKVLGDRPDH 189

Query: 162 VKGAGWGPKPK-SRRGSSSSV-ASTQREEELSQEICTLKEEFQD 203
           VKG G+GP+P   +RGSSS+V +ST  E+EL +++  ++ E ++
Sbjct: 190 VKGLGYGPQPTLCKRGSSSNVTSSTLYEKELEKKVEDMEVEMRE 232

[Close]

BLAST of Moc11g29580 vs. ExPASy TrEMBL
Match: A0A5A7TRX4 (DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G001040 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-18
Identity = 59/154 (38.31%), Postives = 91/154 (59.09%), Query Frame = 0


Query: 46  DDWNMLCARWETDEWKQKSETKKRNRAMMSFNHLAGPKAFAIIAKEKKEEERGDNFSEID 105
           +DWNM+C RWETD WK+K ET KR+ + + FNH+ G K+F  +  E K +++G +  EI+
Sbjct: 824 EDWNMMCDRWETDAWKKKRETNKRSHSAVKFNHVTGAKSFLQVRHELK-KKKGYDVDEIE 883

Query: 106 LFREIRYSDTKGW-VERAETAYLDMMRVREASMENGGEPIQDPEVLETVLGYRSGYVKGA 165
           +F E  + + +GW  ++A+ AYL+M R+   S E G + I   +  E VLG RS      
Sbjct: 884 VFHETHFREKEGWNNDKAKDAYLEMQRIIRESTEAGVQTISTAKACEFVLGSRSMQT--- 943

Query: 166 GWGPKPKSRRGSSSSVASTQREEELSQEICTLKE 199
                P+S     S+V+ST+ +E+   E+  LKE
Sbjct: 944 ---VNPRSGESLRSNVSSTREKEK--NEMAYLKE 968

[Close]

BLAST of Moc11g29580 vs. ExPASy TrEMBL
Match: A0A5A7T4P0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1161G00310 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.5e-17
Identity = 51/153 (33.33%), Postives = 86/153 (56.21%), Query Frame = 0


Query: 41  LLAKPDDWNMLCARWETDEWKQKSETKKRNRAMMSFNHLAGPKAFAIIAKEKKEEERGDN 100
           L+ + +DW+ LC  + +  ++++S T K  R    +NH +G K+F +  + +  E RG  
Sbjct: 168 LVGRDEDWHFLCDHYISRAFQEQSRTNKAARQKQPYNHSSGSKSF-LQRQHELAERRGQP 227

Query: 101 FSEIDLFREIRYSDTKGWVERAETAYLDMMRVREASMENGGEPIQDPEVLETVLGYRSGY 160
              ++LFRE          + AE A+  M+ ++   +  G +P+ + E+ + VLG R GY
Sbjct: 228 VDRVELFRETHVRAGTFVSQAAEDAHNQMLELQSQPIPEGSQPLSEDEICDQVLGRRPGY 287

Query: 161 VKGAGWGPKPKSRRGSSSSVASTQREEELSQEI 194
            KG GWGPKPK+RR +S+S +ST   +   +EI
Sbjct: 288 SKGLGWGPKPKARRTASASSSSTSCSQSTQKEI 319

[Close]

BLAST of Moc11g29580 vs. ExPASy TrEMBL
Match: A0A5D3C6Z8 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00370 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.5e-17
Identity = 51/153 (33.33%), Postives = 86/153 (56.21%), Query Frame = 0


Query: 41  LLAKPDDWNMLCARWETDEWKQKSETKKRNRAMMSFNHLAGPKAFAIIAKEKKEEERGDN 100
           L+ + +DW+ LC  + +  ++++S T K  R    +NH +G K+F +  + +  E RG  
Sbjct: 167 LVGRDEDWHFLCDHYISRAFQEQSRTNKAARQKQPYNHSSGSKSF-LQRQHELAERRGQP 226

Query: 101 FSEIDLFREIRYSDTKGWVERAETAYLDMMRVREASMENGGEPIQDPEVLETVLGYRSGY 160
              ++LFRE          + AE A+  M+ ++   +  G +P+ + E+ + VLG R GY
Sbjct: 227 VDRVELFRETHVRAGTFVSQAAEDAHNQMLELQSQPIPEGSQPLSEDEICDQVLGRRPGY 286

Query: 161 VKGAGWGPKPKSRRGSSSSVASTQREEELSQEI 194
            KG GWGPKPK+RR +S+S +ST   +   +EI
Sbjct: 287 SKGLGWGPKPKARRTASASSSSTSCSQSTQKEI 318

[Close]

BLAST of Moc11g29580 vs. ExPASy TrEMBL
Match: A0A5D3DB16 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001130 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.5e-17
Identity = 51/153 (33.33%), Postives = 86/153 (56.21%), Query Frame = 0


Query: 41  LLAKPDDWNMLCARWETDEWKQKSETKKRNRAMMSFNHLAGPKAFAIIAKEKKEEERGDN 100
           L+ + +DW+ LC  + +  ++++S T K  R    +NH +G K+F +  + +  E RG  
Sbjct: 264 LVGRDEDWHFLCDHYISRAFQEQSRTNKAARQKQPYNHSSGSKSF-LQRQHELAERRGQP 323

Query: 101 FSEIDLFREIRYSDTKGWVERAETAYLDMMRVREASMENGGEPIQDPEVLETVLGYRSGY 160
              ++LFRE          + AE A+  M+ ++   +  G +P+ + E+ + VLG R GY
Sbjct: 324 VDRVELFRETHVRAGTFVSQAAEDAHNQMLELQSQPIPEGSQPLSEDEIYDQVLGRRPGY 383

Query: 161 VKGAGWGPKPKSRRGSSSSVASTQREEELSQEI 194
            KG GWGPKPK+RR +S+S +ST   +   +EI
Sbjct: 384 SKGLGWGPKPKARRTASASSSSTSCSQSTQKEI 415

The following BLAST results are available for this feature:

BLAST of Moc11g29580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887413.1	6.7e-25	42.21	uncharacterized protein LOC120077557 isoform X5 [Benincasa hispida]	[more]
XP_038887408.1	6.7e-25	42.21	poly [ADP-ribose] polymerase 1-like isoform X1 [Benincasa hispida]	[more]
XP_038887409.1	6.7e-25	42.21	poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida]	[more]
XP_022156286.1	1.5e-24	42.68	uncharacterized protein LOC111023212 [Momordica charantia]	[more]
KAA0045598.1	2.7e-18	38.31	uncharacterized protein E6C27_scaffold243G001040 [Cucumis melo var. makuwa]	[more]

BLAST of Moc11g29580 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g29580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DUH3	7.2e-25	42.68	uncharacterized protein LOC111023212 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A5A7TRX4	1.3e-18	38.31	DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7T4P0	2.5e-17	33.33	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3C6Z8	2.5e-17	33.33	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3DB16	2.5e-17	33.33	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of Moc11g29580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004252	Probable transposase, Ptta/En/Spm, plant	PFAM	PF03004	Transposase_24	coord: 45..131 e-value: 1.4E-14 score: 54.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..189
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..191
None	No IPR available	PANTHER	PTHR33499	FAMILY NOT NAMED	coord: 44..188
None	No IPR available	PANTHER	PTHR33499:SF13	TRANSPOSASE, PTTA/EN/SPM, PLANT-RELATED	coord: 44..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g29580.1	Moc11g29580.1	mRNA