Moc11g28850 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g28850
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrotrans_gag domain-containing protein
Location	chr11: 21024671 .. 21025144 (-)
RNA-Seq Expression	Moc11g28850
Synteny	Moc11g28850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAACGGCAAGGTTCCTACCCGACAATTATGAACAAATCTTGTATCAATCATATCAAGTATGCAAACAATATAAGCGGACAATAGAAGAATATACTAGTGAGTGGTATCGATTAAATGCAAGGAATGATTTGTCGAAATCCAAATATCAACAAGTTGCACGGTACATCAATGGCCTTCGAGAAGAGATTCAAGATCGAATTTATTTATTTCCCCTAGGAGGAATTCGTGAAGCAGTAGCAATGGCCATCAAGATTGAGAAGAAAATAAAGAAAGAAATCGGGACTATGGACGAGCAAGCTGGAACGAAAATCAAAGAACTCTCAATTTGGGGTAGAGGAGGAAGAACACCATCCGGTCGATTTGGATCTACTAATACATATGGAGAATTTAAACAAGATAATCAGAATTGGGAAAAAAAGAATGAACCCTACGAAGGAGGAGATGATAAACCAAAAGCACCATCTAAGTAG

mRNA sequence

ATGTTAACGGCAAGGTTCCTACCCGACAATTATGAACAAATCTTGTATCAATCATATCAAGTATGCAAACAATATAAGCGGACAATAGAAGAATATACTAGTGAGTGGTATCGATTAAATGCAAGGAATGATTTGTCGAAATCCAAATATCAACAAGTTGCACGGTACATCAATGGCCTTCGAGAAGAGATTCAAGATCGAATTTATTTATTTCCCCTAGGAGGAATTCGTGAAGCAGTAGCAATGGCCATCAAGATTGAGAAGAAAATAAAGAAAGAAATCGGGACTATGGACGAGCAAGCTGGAACGAAAATCAAAGAACTCTCAATTTGGGGTAGAGGAGGAAGAACACCATCCGGTCGATTTGGATCTACTAATACATATGGAGAATTTAAACAAGATAATCAGAATTGGGAAAAAAAGAATGAACCCTACGAAGGAGGAGATGATAAACCAAAAGCACCATCTAAGTAG

Coding sequence (CDS)

ATGTTAACGGCAAGGTTCCTACCCGACAATTATGAACAAATCTTGTATCAATCATATCAAGTATGCAAACAATATAAGCGGACAATAGAAGAATATACTAGTGAGTGGTATCGATTAAATGCAAGGAATGATTTGTCGAAATCCAAATATCAACAAGTTGCACGGTACATCAATGGCCTTCGAGAAGAGATTCAAGATCGAATTTATTTATTTCCCCTAGGAGGAATTCGTGAAGCAGTAGCAATGGCCATCAAGATTGAGAAGAAAATAAAGAAAGAAATCGGGACTATGGACGAGCAAGCTGGAACGAAAATCAAAGAACTCTCAATTTGGGGTAGAGGAGGAAGAACACCATCCGGTCGATTTGGATCTACTAATACATATGGAGAATTTAAACAAGATAATCAGAATTGGGAAAAAAAGAATGAACCCTACGAAGGAGGAGATGATAAACCAAAAGCACCATCTAAGTAG

Protein sequence

MLTARFLPDNYEQILYQSYQVCKQYKRTIEEYTSEWYRLNARNDLSKSKYQQVARYINGLREEIQDRIYLFPLGGIREAVAMAIKIEKKIKKEIGTMDEQAGTKIKELSIWGRGGRTPSGRFGSTNTYGEFKQDNQNWEKKNEPYEGGDDKPKAPSK

Homology

[Close]

BLAST of Moc11g28850 vs. NCBI nr
Match: XP_040994264.1 (uncharacterized protein LOC121240799 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-18
Identity = 50/92 (54.35%), Postives = 71/92 (77.17%), Query Frame = 0


Query: 1   MLTARFLPDNYEQILYQSYQVCKQYKRTIEEYTSEWYRLNARNDLSKSKYQQVARYINGL 60
           ++ ARFLP +YEQ+LYQ YQ C+Q  RTI EYT E+YRLN+RN+L++++ QQVARYI GL
Sbjct: 185 LMRARFLPPDYEQLLYQQYQNCRQGARTINEYTEEFYRLNSRNNLAETEGQQVARYIGGL 244

Query: 61  REEIQDRIYLFPLGGIREAVAMAIKIEKKIKK 93
           R  IQD++ L  +  + EAV +A+KIE ++ +
Sbjct: 245 RVAIQDKVTLHAVWTLSEAVNLAMKIESQLSR 276

[Close]

BLAST of Moc11g28850 vs. NCBI nr
Match: XP_035547276.1 (uncharacterized protein LOC108991242 [Juglans regia])

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-17
Identity = 50/92 (54.35%), Postives = 71/92 (77.17%), Query Frame = 0


Query: 1   MLTARFLPDNYEQILYQSYQVCKQYKRTIEEYTSEWYRLNARNDLSKSKYQQVARYINGL 60
           ++ ARFLP +YEQ+LYQ YQ C+Q  R+I EYT E+YRLN+RN+LS+++ QQVARYI GL
Sbjct: 138 LMRARFLPPDYEQLLYQQYQNCRQGIRSINEYTEEFYRLNSRNNLSETEGQQVARYIGGL 197

Query: 61  REEIQDRIYLFPLGGIREAVAMAIKIEKKIKK 93
           R  IQD++ L  +  + EAV +A+KIE ++ +
Sbjct: 198 RITIQDKVTLHTVWTLSEAVNLAMKIELQLSR 229

[Close]

BLAST of Moc11g28850 vs. NCBI nr
Match: XP_039122362.1 (uncharacterized protein LOC120258941 [Dioscorea cayenensis subsp. rotundata])

HSP 1 Score: 98.6 bits (244), Expect = 5.1e-17
Identity = 46/91 (50.55%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 2   LTARFLPDNYEQILYQSYQVCKQYKRTIEEYTSEWYRLNARNDLSKSKYQQVARYINGLR 61
           L  RFLP +Y+QILYQ YQ CKQ  RT+++YT E++RL+ARN+LS+++ QQ AR+++GLR
Sbjct: 167 LMFRFLPSDYDQILYQRYQDCKQGVRTVQQYTEEFHRLSARNNLSETEAQQTARFMSGLR 226

Query: 62  EEIQDRIYLFPLGGIREAVAMAIKIEKKIKK 93
             I+DR+ L P+ G+ EA+  A+K+E ++ +
Sbjct: 227 TTIRDRVELAPVYGVDEAINRAMKVEAQLNR 257

[Close]

BLAST of Moc11g28850 vs. NCBI nr
Match: XP_015867559.1 (uncharacterized protein LOC107405062 [Ziziphus jujuba])

HSP 1 Score: 97.8 bits (242), Expect = 8.7e-17
Identity = 57/116 (49.14%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 1   MLTARFLPDNYEQILYQSYQVCKQYKRTIEEYTSEWYRLNARNDLSKSKYQQVARYINGL 60
           ML ARFLP ++EQILYQ Y  C Q  R+I EYT E+YRL+AR +L++++ Q VARY+ GL
Sbjct: 181 MLRARFLPVDFEQILYQQYHHCHQGNRSISEYTEEFYRLSARVNLNENEGQLVARYVAGL 240

Query: 61  REEIQDRIYLFPLGGIREAVAMAIKIEKKIKKEI-------GTMDEQAGTKIKELS 110
              IQ+RI L P+  + EAV +A KIEK+I++ +         M E    KIK LS
Sbjct: 241 LTPIQERIELSPVWNLSEAVNLAFKIEKQIERHVTKTPAKWKPMSELYPPKIKSLS 296

[Close]

BLAST of Moc11g28850 vs. NCBI nr
Match: XP_024933220.1 (uncharacterized protein LOC112492864 [Ziziphus jujuba])

HSP 1 Score: 97.8 bits (242), Expect = 8.7e-17
Identity = 57/116 (49.14%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 1   MLTARFLPDNYEQILYQSYQVCKQYKRTIEEYTSEWYRLNARNDLSKSKYQQVARYINGL 60
           ML ARFLP ++EQILYQ Y  C Q  R+I EYT E+YRL+AR +L++++ Q VARY+ GL
Sbjct: 220 MLRARFLPVDFEQILYQQYHHCHQGNRSISEYTEEFYRLSARVNLNENEGQLVARYVAGL 279

Query: 61  REEIQDRIYLFPLGGIREAVAMAIKIEKKIKKEI-------GTMDEQAGTKIKELS 110
              IQ+RI L P+  + EAV +A KIEK+I++ +         M E    KIK LS
Sbjct: 280 LTPIQERIELSPVWNLSEAVNLAFKIEKQIERHVTKTPAKWKPMSELYPPKIKSLS 335

[Close]

BLAST of Moc11g28850 vs. ExPASy TrEMBL
Match: A0A6P9EIQ8 (uncharacterized protein LOC108991242 OS=Juglans regia OX=51240 GN=LOC108991242 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.0e-18
Identity = 50/92 (54.35%), Postives = 71/92 (77.17%), Query Frame = 0


Query: 1   MLTARFLPDNYEQILYQSYQVCKQYKRTIEEYTSEWYRLNARNDLSKSKYQQVARYINGL 60
           ++ ARFLP +YEQ+LYQ YQ C+Q  R+I EYT E+YRLN+RN+LS+++ QQVARYI GL
Sbjct: 138 LMRARFLPPDYEQLLYQQYQNCRQGIRSINEYTEEFYRLNSRNNLSETEGQQVARYIGGL 197

Query: 61  REEIQDRIYLFPLGGIREAVAMAIKIEKKIKK 93
           R  IQD++ L  +  + EAV +A+KIE ++ +
Sbjct: 198 RITIQDKVTLHTVWTLSEAVNLAMKIELQLSR 229

[Close]

BLAST of Moc11g28850 vs. ExPASy TrEMBL
Match: A0A6P6GHI6 (uncharacterized protein LOC112492864 OS=Ziziphus jujuba OX=326968 GN=LOC112492864 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 4.2e-17
Identity = 57/116 (49.14%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 1   MLTARFLPDNYEQILYQSYQVCKQYKRTIEEYTSEWYRLNARNDLSKSKYQQVARYINGL 60
           ML ARFLP ++EQILYQ Y  C Q  R+I EYT E+YRL+AR +L++++ Q VARY+ GL
Sbjct: 220 MLRARFLPVDFEQILYQQYHHCHQGNRSISEYTEEFYRLSARVNLNENEGQLVARYVAGL 279

Query: 61  REEIQDRIYLFPLGGIREAVAMAIKIEKKIKKEI-------GTMDEQAGTKIKELS 110
              IQ+RI L P+  + EAV +A KIEK+I++ +         M E    KIK LS
Sbjct: 280 LTPIQERIELSPVWNLSEAVNLAFKIEKQIERHVTKTPAKWKPMSELYPPKIKSLS 335

[Close]

BLAST of Moc11g28850 vs. ExPASy TrEMBL
Match: A0A6P3Z018 (uncharacterized protein LOC107405062 OS=Ziziphus jujuba OX=326968 GN=LOC107405062 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 4.2e-17
Identity = 57/116 (49.14%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 1   MLTARFLPDNYEQILYQSYQVCKQYKRTIEEYTSEWYRLNARNDLSKSKYQQVARYINGL 60
           ML ARFLP ++EQILYQ Y  C Q  R+I EYT E+YRL+AR +L++++ Q VARY+ GL
Sbjct: 181 MLRARFLPVDFEQILYQQYHHCHQGNRSISEYTEEFYRLSARVNLNENEGQLVARYVAGL 240

Query: 61  REEIQDRIYLFPLGGIREAVAMAIKIEKKIKKEI-------GTMDEQAGTKIKELS 110
              IQ+RI L P+  + EAV +A KIEK+I++ +         M E    KIK LS
Sbjct: 241 LTPIQERIELSPVWNLSEAVNLAFKIEKQIERHVTKTPAKWKPMSELYPPKIKSLS 296

[Close]

BLAST of Moc11g28850 vs. ExPASy TrEMBL
Match: A0A6P6GFU0 (uncharacterized protein LOC112492819 OS=Ziziphus jujuba OX=326968 GN=LOC112492819 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.6e-16
Identity = 56/116 (48.28%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 1   MLTARFLPDNYEQILYQSYQVCKQYKRTIEEYTSEWYRLNARNDLSKSKYQQVARYINGL 60
           ML ARFLP ++EQILYQ Y  C Q  R+I E T E+YRL+AR +L++++ Q VARY+ GL
Sbjct: 228 MLRARFLPVDFEQILYQQYHHCHQGNRSISECTEEFYRLSARVNLNENEGQLVARYVAGL 287

Query: 61  REEIQDRIYLFPLGGIREAVAMAIKIEKKIKKEI-------GTMDEQAGTKIKELS 110
              IQ+RI L P+  + EAV +A KIEK+I++ +         M E    KIK LS
Sbjct: 288 LTPIQERIELSPVWNLSEAVNLAFKIEKQIERHVTKTPAKWKPMSELYPPKIKSLS 343

[Close]

BLAST of Moc11g28850 vs. ExPASy TrEMBL
Match: A0A6P3YU03 (uncharacterized protein LOC107403258 OS=Ziziphus jujuba OX=326968 GN=LOC107403258 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.6e-16
Identity = 54/116 (46.55%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 1   MLTARFLPDNYEQILYQSYQVCKQYKRTIEEYTSEWYRLNARNDLSKSKYQQVARYINGL 60
           ML ARFLP ++EQILYQ Y  C Q  R+I EYT E+YRL+ R +L++++ Q VARY+ GL
Sbjct: 102 MLRARFLPVDFEQILYQQYHHCHQGNRSISEYTEEFYRLSVRVNLNENEGQLVARYVAGL 161

Query: 61  REEIQDRIYLFPLGGIREAVAMAIKIEKKIKKEI-------GTMDEQAGTKIKELS 110
              IQ+RI L P+  + +AV +A KIEK+I++ +         M E    K+K LS
Sbjct: 162 LTPIQERIELNPVWNLSDAVNLAFKIEKQIERHVTKTPTKWKPMSELYPPKVKSLS 217

[Close]

BLAST of Moc11g28850 vs. TAIR 10
Match: AT1G47350.1 (F-box associated ubiquitination effector family protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.1e-04
Identity = 25/77 (32.47%), Postives = 42/77 (54.55%), Query Frame = 0


Query: 15 LYQSYQVCKQYKRTIEEYTSEWYRLNARNDLSKSKYQQVARYINGLREEIQDRIYLFPLG 74
          +Y   Q  +   R++EEY  E+Y L   ND++ S+ Q V+R I  LR ++Q+ +  F   
Sbjct: 1  MYNKLQNLRHETRSVEEYAEEFYLLLTFNDINDSQTQLVSRLIGELRSQLQNSLSQFDPT 60

Query: 75 GIREAVAMAIKIEKKIK 92
           + EA   A   EK+++
Sbjct: 61 TVSEAHRRAASFEKQMR 77

The following BLAST results are available for this feature:

BLAST of Moc11g28850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_040994264.1	2.1e-18	54.35	uncharacterized protein LOC121240799 [Juglans microcarpa x Juglans regia]	[more]
XP_035547276.1	1.0e-17	54.35	uncharacterized protein LOC108991242 [Juglans regia]	[more]
XP_039122362.1	5.1e-17	50.55	uncharacterized protein LOC120258941 [Dioscorea cayenensis subsp. rotundata]	[more]
XP_015867559.1	8.7e-17	49.14	uncharacterized protein LOC107405062 [Ziziphus jujuba]	[more]
XP_024933220.1	8.7e-17	49.14	uncharacterized protein LOC112492864 [Ziziphus jujuba]	[more]

BLAST of Moc11g28850 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g28850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P9EIQ8	5.0e-18	54.35	uncharacterized protein LOC108991242 OS=Juglans regia OX=51240 GN=LOC108991242 P...	[more]
A0A6P6GHI6	4.2e-17	49.14	uncharacterized protein LOC112492864 OS=Ziziphus jujuba OX=326968 GN=LOC11249286...	[more]
A0A6P3Z018	4.2e-17	49.14	uncharacterized protein LOC107405062 OS=Ziziphus jujuba OX=326968 GN=LOC10740506...	[more]
A0A6P6GFU0	4.6e-16	48.28	uncharacterized protein LOC112492819 OS=Ziziphus jujuba OX=326968 GN=LOC11249281...	[more]
A0A6P3YU03	4.6e-16	46.55	uncharacterized protein LOC107403258 OS=Ziziphus jujuba OX=326968 GN=LOC10740325...	[more]

BLAST of Moc11g28850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G47350.1	1.1e-04	32.47	F-box associated ubiquitination effector family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..157
None	No IPR available	PANTHER	PTHR35046:SF6	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 2..133
None	No IPR available	PANTHER	PTHR35046	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 2..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g28850.1	Moc11g28850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0016740	transferase activity