Moc11g28370 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g28370
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr11: 20672499 .. 20673487 (+)
RNA-Seq Expression	Moc11g28370
Synteny	Moc11g28370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGTTAAGTATGCAAAAACTGATTAACTTGAATTCTCATTATTTATTTGGCACAAAAATTGACAAGGTCGTTGGAGTGCTAACTTGTTTTTGCAGGTTCTTTTATTCTAGAGTGTTCTCGAGGATCTATTGTGACTATTGGAAATTTTTCGGTAAGAACAATTGGCGTCGTCTGTGGGAAACGTAAGCTTTCTCCGAATATTGCAAATCAACAAATAGCCTTGTTCCAAACCAGCGCAGCAATGGCGGACGATGAAATGTCTCAGCGATCATTTACGAGCAGCTGGACTCAGAATACAGTGCGCACCCCAACCCGTGGATGGGGAAGACCACCTTTGATGTGGCGCGGCGGAGCGAGAAGAAATGTCACTCGACCTAGTACCTCAAGTACAACCCGACAGATGGGCCAAGAGTTAGTGGGGTTGCATGCAGAGCTTAATGAAGTCCGTTCTGAACTAGGAGGAGTCGCTCACCTGAGGGTGGAGATAGCGGAATTGACTGCGGCCTTGCGTCATAGTCAAATTCCTGAAGTACCAACGGGGGACGCTCCGAGACCATCGGTCAGGGTCTGAGAGATTGATGTACACGAGCAAACTGGCGAATCCCTTGTTCCTCGTGTAAGTGCACGAGAGTCTGAATTTGGGTGGAGGCGAACAACAACACTCGATCCGAGGGCAGGACTGCGGGTGCACATTACAATAGAAGCGCCCGACCTTTTGTCAGATGTTGAATGAGCGCCATATGCCTCAGCAACCGGGCCAACAAACTCCAGTTACGCTGAACTTGGGGTCTATCCCAGCTACTGGGGGAGTCAACTCGAACACAAATCAATGGCTGCACGCCGTAGCGACTGCGACAACATCAACATATCAAGCAATAGTGGACATACCAGAGGTGCAAGATTCGATGAAGAAGGTGATTAGCAAGCTTCAGAACTACTTTGAAATCTTAAGGCAGAGTTGCAAGGCGGACAATACTCACTAA

mRNA sequence

ATGAAGAAGTTAAGTTCTTTTATTCTAGAGTGTTCTCGAGGATCTATTGTGACTATTGGAAATTTTTCGGTAAGAACAATTGGCGTCGTCTGTGGGAAACGTAAGCTTTCTCCGAATATTGCAAATCAACAAATAGCCTTGTTCCAAACCAGCGCAGCAATGGCGGACGATGAAATGTCTCAGCGATCATTTACGAGCAGCTGGACTCAGAATACAGTGCGCACCCCAACCCGTGGATGGGGAAGACCACCTTTGATGTGGCGCGGCGGAGCGAGAAGAAATGTCACTCGACCTAGTACCTCAAGTACAACCCGACAGATGGGCCAAGAGTTAGTGGGGTTGCATGCAGAGCTTAATGAAGTCCGTTCTGAACTAGGAGGAGTCGCTCACCTGAGGGTGGAGATAGCGGAATTGACTGCGGCCTTGCGTCATAGTCAAATTCCTGAAGTACCAACGGGGGACGCTCCGAGACCATCGGTCAGGATGTTGAATGAGCGCCATATGCCTCAGCAACCGGGCCAACAAACTCCAGTTACGCTGAACTTGGGGTCTATCCCAGCTACTGGGGGAGTCAACTCGAACACAAATCAATGGCTGCACGCCGTAGCGACTGCGACAACATCAACATATCAAGCAATAGTGGACATACCAGAGGTGCAAGATTCGATGAAGAAGGTGATTAGCAAGCTTCAGAACTACTTTGAAATCTTAAGGCAGAGTTGCAAGGCGGACAATACTCACTAA

Coding sequence (CDS)

ATGAAGAAGTTAAGTTCTTTTATTCTAGAGTGTTCTCGAGGATCTATTGTGACTATTGGAAATTTTTCGGTAAGAACAATTGGCGTCGTCTGTGGGAAACGTAAGCTTTCTCCGAATATTGCAAATCAACAAATAGCCTTGTTCCAAACCAGCGCAGCAATGGCGGACGATGAAATGTCTCAGCGATCATTTACGAGCAGCTGGACTCAGAATACAGTGCGCACCCCAACCCGTGGATGGGGAAGACCACCTTTGATGTGGCGCGGCGGAGCGAGAAGAAATGTCACTCGACCTAGTACCTCAAGTACAACCCGACAGATGGGCCAAGAGTTAGTGGGGTTGCATGCAGAGCTTAATGAAGTCCGTTCTGAACTAGGAGGAGTCGCTCACCTGAGGGTGGAGATAGCGGAATTGACTGCGGCCTTGCGTCATAGTCAAATTCCTGAAGTACCAACGGGGGACGCTCCGAGACCATCGGTCAGGATGTTGAATGAGCGCCATATGCCTCAGCAACCGGGCCAACAAACTCCAGTTACGCTGAACTTGGGGTCTATCCCAGCTACTGGGGGAGTCAACTCGAACACAAATCAATGGCTGCACGCCGTAGCGACTGCGACAACATCAACATATCAAGCAATAGTGGACATACCAGAGGTGCAAGATTCGATGAAGAAGGTGATTAGCAAGCTTCAGAACTACTTTGAAATCTTAAGGCAGAGTTGCAAGGCGGACAATACTCACTAA

Protein sequence

MKKLSSFILECSRGSIVTIGNFSVRTIGVVCGKRKLSPNIANQQIALFQTSAAMADDEMSQRSFTSSWTQNTVRTPTRGWGRPPLMWRGGARRNVTRPSTSSTTRQMGQELVGLHAELNEVRSELGGVAHLRVEIAELTAALRHSQIPEVPTGDAPRPSVRMLNERHMPQQPGQQTPVTLNLGSIPATGGVNSNTNQWLHAVATATTSTYQAIVDIPEVQDSMKKVISKLQNYFEILRQSCKADNTH

Homology

[Close]

BLAST of Moc11g28370 vs. NCBI nr
Match: XP_022158520.1 (uncharacterized protein LOC111024991 [Momordica charantia])

HSP 1 Score: 93.2 bits (230), Expect = 3.4e-15
Identity = 50/70 (71.43%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 161 RMLNERHMPQQPGQQTPVTLNLGSIPATGGVNSNTNQWLHAVATATTSTYQAIVDIPEVQ 220
           +ML ER++ QQ GQQTPVTLNLGS P T GVNSNT Q  HA A ATTSTY   VD+PEVQ
Sbjct: 524 QMLEERNVSQQAGQQTPVTLNLGSTPMTRGVNSNTVQQPHAEAAATTSTYPTTVDVPEVQ 583

Query: 221 DSMKKVISKL 231
           DSMK+VI KL
Sbjct: 584 DSMKEVIIKL 593

[Close]

BLAST of Moc11g28370 vs. ExPASy TrEMBL
Match: A0A6J1DW30 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024991 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-15
Identity = 50/70 (71.43%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 161 RMLNERHMPQQPGQQTPVTLNLGSIPATGGVNSNTNQWLHAVATATTSTYQAIVDIPEVQ 220
           +ML ER++ QQ GQQTPVTLNLGS P T GVNSNT Q  HA A ATTSTY   VD+PEVQ
Sbjct: 524 QMLEERNVSQQAGQQTPVTLNLGSTPMTRGVNSNTVQQPHAEAAATTSTYPTTVDVPEVQ 583

Query: 221 DSMKKVISKL 231
           DSMK+VI KL
Sbjct: 584 DSMKEVIIKL 593

The following BLAST results are available for this feature:

BLAST of Moc11g28370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158520.1	3.4e-15	71.43	uncharacterized protein LOC111024991 [Momordica charantia]	[more]

BLAST of Moc11g28370 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g28370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DW30	1.6e-15	71.43	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024991 PE=4 SV=1	[more]

BLAST of Moc11g28370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g28370.1	Moc11g28370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process