Moc11g28360 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g28360
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	hAT transposon superfamily
Location	chr11: 20666093 .. 20667323 (+)
RNA-Seq Expression	Moc11g28360
Synteny	Moc11g28360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCCATCTTTTTGGAATTCAGTTGTGTATACTTTGAATGCATCGGGCCCTTTAGTTCGTGTGTTGAGGCTAGTAGATGGTGATAAACCAGCTATGGGTTATATTTACGAAGCTATGGATAGGGCAAATGAGGCTATTAAGAGTGGTTTAATGGAAATGAGGCGAAGTATAGACCGATTTGGGAGATTGTTGATCAAAAGTGGGATTGCCAACTTCATCGGCCTTTACATGCAGCCGGATATTATTTGAATCCATCTCTTTTCTATGACAAAAAAAGAGAGAATTATGCAAGATCCTGAGGTTATGGATGGTCTGATCAAAGTTATAGAACGATTAATACCATTTATCGATGATCAAGTTCAATGTTCAATCGAATTAGAATTGTACAATGAAGCAAAAGGCATGTTTTCGAGTAATGTAGCAATAAGGACGAGGGGTGTTAAAACACCAAGTAATGACATTATTTATTACTTTTAGTTTTAAATTTTTAATAGACATATTTAAGTTTGAACTACTAAAATTCTAAATCATTTGTTTAATATATGTAAAGCTACATGGTGGTCTCTTTATGATGTTAATGCTTTGATTTTACGAAAGTTAGCCATGAGAGTCCTTAGTCTAACGTGCAGCGCTTCTGACTGTGAGCGCAATTGGAGTGTTTTTTAACACGTAAGTGAGAATAATTTGGTTTTTCCATTGCTAATTGAAGATTGAAAAATCCACTTTTGACTCTATAGTCTACATTCGTTAATAATTTTATAGATTCATTCCAATAAGAGGAATATGTTAGAGCAAAAGCGTCTTAATGACTTGGTTTATATAAAATATAACCAAACACTTAAAAGAGCGCTACACTCTACAAGACCAACTTGATCCCATTACTTTGGATCATATTGATGAAAGTAATGAATGGTTGATTGGAACACTCGAAGAAGAAGATGGTCAAGAAGAAAATTAGTTGGTCTTTGATGATGACGACCTCACATGGGGAGATGTAGCCGAGGCCAGTGGTGTTAGAGAGCCCATAAGGCAAACTAGAACATATGCAAGATCTAAAGGAAAGTCGCCTGCTACTCCCGCTCCCACAACTTCAAGAGTTCGAAAATCAGTGCAAGTGGTGGTTAGTGATGATGATGATGACACCGAAGAAGAAGAATTGGAAAAGGAAGATTGTCAGGACGTCCAAGATGAAGAGAATTTAAATTTAGATGAGGATGATGATCTTTGA

mRNA sequence

ATGATGCCATCTTTTTGGAATTCAGTTGTGTATACTTTGAATGCATCGGGCCCTTTAGTTCGTGTGTTGAGGCTAGTAGATGGTGATAAACCAGCTATGGGTTATATTTACGAAGCTATGGATAGGGCAAATGAGGCTATTAAGAGTGGTTTAATGGAAATGAGGCGAAGTATAGACCGATTTGGGAGATTGTTGATCAAAACCGAGGCCAGTGGTGTTAGAGAGCCCATAAGGCAAACTAGAACATATGCAAGATCTAAAGGAAAGTCGCCTGCTACTCCCGCTCCCACAACTTCAAGAGTTCGAAAATCAGTGCAAGTGGTGGTTAGTGATGATGATGATGACACCGAAGAAGAAGAATTGGAAAAGGAAGATTGTCAGGACGTCCAAGATGAAGAGAATTTAAATTTAGATGAGGATGATGATCTTTGA

Coding sequence (CDS)

ATGATGCCATCTTTTTGGAATTCAGTTGTGTATACTTTGAATGCATCGGGCCCTTTAGTTCGTGTGTTGAGGCTAGTAGATGGTGATAAACCAGCTATGGGTTATATTTACGAAGCTATGGATAGGGCAAATGAGGCTATTAAGAGTGGTTTAATGGAAATGAGGCGAAGTATAGACCGATTTGGGAGATTGTTGATCAAAACCGAGGCCAGTGGTGTTAGAGAGCCCATAAGGCAAACTAGAACATATGCAAGATCTAAAGGAAAGTCGCCTGCTACTCCCGCTCCCACAACTTCAAGAGTTCGAAAATCAGTGCAAGTGGTGGTTAGTGATGATGATGATGACACCGAAGAAGAAGAATTGGAAAAGGAAGATTGTCAGGACGTCCAAGATGAAGAGAATTTAAATTTAGATGAGGATGATGATCTTTGA

Protein sequence

MMPSFWNSVVYTLNASGPLVRVLRLVDGDKPAMGYIYEAMDRANEAIKSGLMEMRRSIDRFGRLLIKTEASGVREPIRQTRTYARSKGKSPATPAPTTSRVRKSVQVVVSDDDDDTEEEELEKEDCQDVQDEENLNLDEDDDL

Homology

[Close]

BLAST of Moc11g28360 vs. NCBI nr
Match: XP_022143395.1 (uncharacterized protein LOC111013272 [Momordica charantia])

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-24
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 69  EASGVREPIRQTRTYARSKGKSPATPAPTTSRVRKSVQVVVSDDDDDT--EEEELEKEDC 128
           EASGVREPIRQTRTYARSKGKSPATPAPTTSRVRKSVQVVVSDDDDDT  EEEELEKEDC
Sbjct: 175 EASGVREPIRQTRTYARSKGKSPATPAPTTSRVRKSVQVVVSDDDDDTEEEEEELEKEDC 234

Query: 129 QDVQDEENLNLDEDDDL 144
           +DVQDEENL+LDEDD+L
Sbjct: 235 EDVQDEENLDLDEDDEL 251

[Close]

BLAST of Moc11g28360 vs. NCBI nr
Match: XP_022157603.1 (uncharacterized protein LOC111024254 [Momordica charantia])

HSP 1 Score: 121.7 bits (304), Expect = 5.1e-24
Identity = 71/78 (91.03%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 69  EASGVREPIRQTRTYARSKGKSPATPAPTTSRVRKSVQVVVSDDDDDT---EEEELEKED 128
           EASGVREPIRQTRTY RSKGKSPATPAPTTSRVRKSVQVVVSDDDDDT   EEEELEKED
Sbjct: 123 EASGVREPIRQTRTYXRSKGKSPATPAPTTSRVRKSVQVVVSDDDDDTEEEEEEELEKED 182

Query: 129 CQDVQDEENLNLDEDDDL 144
           C+DVQDEENL+LDEDD+L
Sbjct: 183 CEDVQDEENLDLDEDDEL 200

[Close]

BLAST of Moc11g28360 vs. NCBI nr
Match: XP_022147661.1 (uncharacterized protein LOC111016530 [Momordica charantia])

HSP 1 Score: 119.4 bits (298), Expect = 2.5e-23
Identity = 70/78 (89.74%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 69  EASGVREPIRQTRTYARSKGKSPATPAPTTSRVRKSVQVVVSDDDDDTEEEE---LEKED 128
           EASGVREPIRQTRTY RSKGKSPATPAPTTSRVRKSVQVVVSDDDDDTEEEE   LEK D
Sbjct: 62  EASGVREPIRQTRTYTRSKGKSPATPAPTTSRVRKSVQVVVSDDDDDTEEEEEELLEKGD 121

Query: 129 CQDVQDEENLNLDEDDDL 144
           C+DVQDEENL+LDEDD+L
Sbjct: 122 CEDVQDEENLDLDEDDEL 139

[Close]

BLAST of Moc11g28360 vs. NCBI nr
Match: XP_022156081.1 (uncharacterized protein LOC111023053 [Momordica charantia])

HSP 1 Score: 101.7 bits (252), Expect = 5.5e-18
Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1   MMPSFWNSVVYTLNASGPLVRVLRLVDGDKPAMGYIYEAMDRANEAIKSG 51
           MMPSFWNSVVYTL ASGPLVRVLRLVDGDKPAMGYIYEAMDRA EAIKSG
Sbjct: 242 MMPSFWNSVVYTLKASGPLVRVLRLVDGDKPAMGYIYEAMDRAKEAIKSG 291

[Close]

BLAST of Moc11g28360 vs. NCBI nr
Match: XP_034679093.1 (uncharacterized protein LOC117909249 [Vitis riparia])

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-13
Identity = 43/68 (63.24%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 1   MMPSFWNSVVYTLNASGPLVRVLRLVDGDKPA-MGYIYEAMDRANEAIKSGLMEMRRSID 60
           +MPSFWN++V+ L  SGPLVRVLRLVDG+K A MGYIYEAM+RA +AI   LMEM+RS  
Sbjct: 122 LMPSFWNTIVFCLKVSGPLVRVLRLVDGEKKAPMGYIYEAMNRAKDAIVRSLMEMKRSTK 181

Query: 61  RFGRLLIK 68
           +    LI+
Sbjct: 182 KSSTSLIR 189

[Close]

BLAST of Moc11g28360 vs. ExPASy TrEMBL
Match: A0A6J1CNP5 (uncharacterized protein LOC111013272 OS=Momordica charantia OX=3673 GN=LOC111013272 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 5.0e-25
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 69  EASGVREPIRQTRTYARSKGKSPATPAPTTSRVRKSVQVVVSDDDDDT--EEEELEKEDC 128
           EASGVREPIRQTRTYARSKGKSPATPAPTTSRVRKSVQVVVSDDDDDT  EEEELEKEDC
Sbjct: 175 EASGVREPIRQTRTYARSKGKSPATPAPTTSRVRKSVQVVVSDDDDDTEEEEEELEKEDC 234

Query: 129 QDVQDEENLNLDEDDDL 144
           +DVQDEENL+LDEDD+L
Sbjct: 235 EDVQDEENLDLDEDDEL 251

[Close]

BLAST of Moc11g28360 vs. ExPASy TrEMBL
Match: A0A6J1DTS8 (uncharacterized protein LOC111024254 OS=Momordica charantia OX=3673 GN=LOC111024254 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.5e-24
Identity = 71/78 (91.03%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 69  EASGVREPIRQTRTYARSKGKSPATPAPTTSRVRKSVQVVVSDDDDDT---EEEELEKED 128
           EASGVREPIRQTRTY RSKGKSPATPAPTTSRVRKSVQVVVSDDDDDT   EEEELEKED
Sbjct: 123 EASGVREPIRQTRTYXRSKGKSPATPAPTTSRVRKSVQVVVSDDDDDTEEEEEEELEKED 182

Query: 129 CQDVQDEENLNLDEDDDL 144
           C+DVQDEENL+LDEDD+L
Sbjct: 183 CEDVQDEENLDLDEDDEL 200

[Close]

BLAST of Moc11g28360 vs. ExPASy TrEMBL
Match: A0A6J1D316 (uncharacterized protein LOC111016530 OS=Momordica charantia OX=3673 GN=LOC111016530 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 70/78 (89.74%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 69  EASGVREPIRQTRTYARSKGKSPATPAPTTSRVRKSVQVVVSDDDDDTEEEE---LEKED 128
           EASGVREPIRQTRTY RSKGKSPATPAPTTSRVRKSVQVVVSDDDDDTEEEE   LEK D
Sbjct: 62  EASGVREPIRQTRTYTRSKGKSPATPAPTTSRVRKSVQVVVSDDDDDTEEEEEELLEKGD 121

Query: 129 CQDVQDEENLNLDEDDDL 144
           C+DVQDEENL+LDEDD+L
Sbjct: 122 CEDVQDEENLDLDEDDEL 139

[Close]

BLAST of Moc11g28360 vs. ExPASy TrEMBL
Match: A0A6J1DTS0 (uncharacterized protein LOC111023053 OS=Momordica charantia OX=3673 GN=LOC111023053 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.7e-18
Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1   MMPSFWNSVVYTLNASGPLVRVLRLVDGDKPAMGYIYEAMDRANEAIKSG 51
           MMPSFWNSVVYTL ASGPLVRVLRLVDGDKPAMGYIYEAMDRA EAIKSG
Sbjct: 242 MMPSFWNSVVYTLKASGPLVRVLRLVDGDKPAMGYIYEAMDRAKEAIKSG 291

[Close]

BLAST of Moc11g28360 vs. ExPASy TrEMBL
Match: A0A7N2KY88 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 37/49 (75.51%), Postives = 44/49 (89.80%), Query Frame = 0


Query: 1   MMPSFWNSVVYTLNASGPLVRVLRLVDGDK-PAMGYIYEAMDRANEAIK 49
           +MP+FWN+V Y+L  SGP+VRVLRLVDG+K PAMGYIYEAMDRA EAI+
Sbjct: 291 LMPTFWNTVGYSLKVSGPIVRVLRLVDGEKRPAMGYIYEAMDRAKEAIE 339

[Close]

BLAST of Moc11g28360 vs. TAIR 10
Match: AT5G33406.1 (hAT dimerisation domain-containing protein / transposase-related )

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-09
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 4   SFWNSVVYTLNASGPLVRVLRLVDGD-KPAMGYIYEAMDRANEAI 48
           SFW +V++ L   GPL++VLR+VDG+ KP MGYIY AMD+A E I
Sbjct: 67  SFWKNVLHALKLGGPLIQVLRMVDGERKPPMGYIYGAMDQAKETI 111

[Close]

BLAST of Moc11g28360 vs. TAIR 10
Match: AT3G22220.1 (hAT transposon superfamily )

HSP 1 Score: 52.0 bits (123), Expect = 4.6e-07
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 5   FWNSVVYTLNASGPLVRVLRLVDGD-KPAMGYIYEAMDRANEAIKSGL 52
           FW ++    + + P++RVLR+V  + KPAMGY+Y AM RA EAIK+ L
Sbjct: 461 FWKALTLANHITAPILRVLRIVCSERKPAMGYVYAAMYRAKEAIKTNL 508

[Close]

BLAST of Moc11g28360 vs. TAIR 10
Match: AT3G22220.2 (hAT transposon superfamily )

HSP 1 Score: 52.0 bits (123), Expect = 4.6e-07
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 5   FWNSVVYTLNASGPLVRVLRLVDGD-KPAMGYIYEAMDRANEAIKSGL 52
           FW ++    + + P++RVLR+V  + KPAMGY+Y AM RA EAIK+ L
Sbjct: 461 FWKALTLANHITAPILRVLRIVCSERKPAMGYVYAAMYRAKEAIKTNL 508

[Close]

BLAST of Moc11g28360 vs. TAIR 10
Match: AT4G15020.1 (hAT transposon superfamily )

HSP 1 Score: 50.1 bits (118), Expect = 1.8e-06
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 4   SFWNSVVYTLNASGPLVRVLRLVDGDK-PAMGYIYEAMDRANEAIKSGLM 53
           +FW +V    + + PL+R LR+V  +K PAMGY+Y A+ RA +AIK+ L+
Sbjct: 463 AFWKAVALVNHLTSPLLRALRIVCSEKRPAMGYVYAALYRAKDAIKTHLV 512

[Close]

BLAST of Moc11g28360 vs. TAIR 10
Match: AT4G15020.2 (hAT transposon superfamily )

HSP 1 Score: 50.1 bits (118), Expect = 1.8e-06
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 4   SFWNSVVYTLNASGPLVRVLRLVDGDK-PAMGYIYEAMDRANEAIKSGLM 53
           +FW +V    + + PL+R LR+V  +K PAMGY+Y A+ RA +AIK+ L+
Sbjct: 463 AFWKAVALVNHLTSPLLRALRIVCSEKRPAMGYVYAALYRAKDAIKTHLV 512

The following BLAST results are available for this feature:

BLAST of Moc11g28360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143395.1	1.0e-24	93.51	uncharacterized protein LOC111013272 [Momordica charantia]	[more]
XP_022157603.1	5.1e-24	91.03	uncharacterized protein LOC111024254 [Momordica charantia]	[more]
XP_022147661.1	2.5e-23	89.74	uncharacterized protein LOC111016530 [Momordica charantia]	[more]
XP_022156081.1	5.5e-18	96.00	uncharacterized protein LOC111023053 [Momordica charantia]	[more]
XP_034679093.1	1.4e-13	63.24	uncharacterized protein LOC117909249 [Vitis riparia]	[more]

BLAST of Moc11g28360 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g28360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNP5	5.0e-25	93.51	uncharacterized protein LOC111013272 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DTS8	2.5e-24	91.03	uncharacterized protein LOC111024254 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1D316	1.2e-23	89.74	uncharacterized protein LOC111016530 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1DTS0	2.7e-18	96.00	uncharacterized protein LOC111023053 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A7N2KY88	1.1e-11	75.51	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Moc11g28360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G33406.1	1.0e-09	60.00	hAT dimerisation domain-containing protein / transposase-related	[more]
AT3G22220.1	4.6e-07	50.00	hAT transposon superfamily	[more]
AT3G22220.2	4.6e-07	50.00	hAT transposon superfamily	[more]
AT4G15020.1	1.8e-06	46.00	hAT transposon superfamily	[more]
AT4G15020.2	1.8e-06	46.00	hAT transposon superfamily	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..105
None	No IPR available	PANTHER	PTHR32166:SF75	HAT TRANSPOSON SUPERFAMILY PROTEIN	coord: 2..51
None	No IPR available	PANTHER	PTHR32166	OSJNBA0013A04.12 PROTEIN	coord: 2..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g28360.1	Moc11g28360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046983	protein dimerization activity