Moc11g28340 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g28340
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr11: 20655410 .. 20658160 (-)
RNA-Seq Expression	Moc11g28340
Synteny	Moc11g28340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAAAACAGCCATGATGACTAATGTGCGCAAGGATGAGAGTTCCGACGGATCGAATACGACCTCAATTTCTCTCCCTAAAAGCACATCCACGACACCTCACATCTCTATCTCTGAAAACACTTCGCTCCAAATTACCGCTCCAAAACTCAACGGAAAAAATTTTCTGCAATGGTCTCAATCGGACCTCCTAGTTATTCGTGGCCGCAGTCGACTCGGGTACATCAATGGCACGATAGCAGAACCAGATGAAGCTGACCCTTCTTTTTCCGTGTGGGATGCACAAAACTCAATGGTCATGGCATGGCTCATTAACTCGATGGAGGAGGACATTAAAGAATCCTTCATCTTCTACTCAACAGCAAAGGATCTTTGGAATGCGCTCACTATGGCTTTTTCTGATTTTGATAACTCGGCTCAATTGTTTGAATTACGCAATAAGGCACGTTCCTTACGACAAGGTGAATCCGATGTCACCCAATACTATAGCTCATTACGTAGGTTGTGGGCTGAACTTGATTTATGTCTCAATCTCGAATGGGAGAACTCGAAGGATGCTGAACGCTTCCGCAAACACGTCGAGAAGGAACGAATTTATGATTTTCTTGCAGGTCTTCGTCCGGAATTAGATGATGTGCGTGGCCGCTTACTTGCCACAAAGCCAATCCCAGCCATTGACGAAATCTTCGCAGAAGTTCGCTGGGAGTCAAGCCGTAAACGTGTGATGATGGGTGATACACACACAAAACCTCTGTCCCTCTCACTGGAATCATCAGCTCTGGCGGCACGAGGTCCACCACCACCTTCATCCCGATCTACTCGTCGGAACAACCTATGGTGTGATCATTGTAAGCGCACAACCCATACAAAAGATCAGTGTTGGGAACTCCATGGTCGTCCTTAACGGAAGAATTTATCAGGGGATTATCGGCCACCTCCACTTACAAATACTCCATCTTCTCGAACCAGCTCCTCCGGCTATCAAGTGGGCCCTAGTGTGTCAAACTCCCAAGATTTGGCCACCTCTCTCCCTTCATTTTCGAAGGCACAACTTGAACAGCTCTATCGCCTCTTAACACCGCCGGTTGAGTCTACTCCTTCGTCAAGTTTTGTGGCACAACGAGGTATTTTTAGTGCAGCTTTAACAAGTCAGCAGCATTCCGATCAGTGGATCATAAATTCGGGTGCAACTGATCATATGACCGCTTTTCATGATATGTTTACCATGTACTCACCCAACCCGATTCAGACACATGTCAAGCTTGCAGATGGGTCATCGGCCATTATTAAGGGCTTTGGTTCTGTTATTCTTAGCCCAAACATTACATTGCACTCAGTGCTCCATGTGCCTAAATTATGTTGCAATCTAATTTCTGTTCAGAAGTTGACTCATGATTTAAAGTGTCAAGCCTTGTTCACTGACTCTAAGTGTTTGTTTCAGGACTTGATAACGGGAACGACGATTGGCAATGCTGATGGCTTTGAAGGGCTCTACTACTTCAGAGGACCAAGTCTAAGAAATAAACAAGTTCTCCAGGTTGGTAGTGAGTCGAATTCTAGGGAACAACAAATTCTACTTTTACATCGCCGTTTAGGGCACCCGAGTTTTCAGTATCTTAAACATTTGTACCCTTCACTTTTTCATAAAGATGACCTTTTTACTTGCGAAGTGTGTCAACTTGCAAAACACTCTCGTACATCTTATCCTTCTGTTGAGTATATACCATCCAGTCCATTCACAATGATTCATAGTGATTTATGGGGTCCGTCTCGCATCAAAACTATGTCCGGTAAACGTTGGTTCCTTACCTTCACTGATGACCACACTAGGGTTTGTTGGGTCTATTTACTTAAAGAAAAATCAGAAACTGCATCAATCTTTCAACAGTTTCATTCTCTCATTCATAATCAATTTAATACGAGCATCAAAATTCTTCGCACAGATAAGGGGACAGAATATTTTAATTAAATATTGGGAACTTTCCTGTCTCAAAATGGAATCATTCACCAAAGTTCCTGTGTCATTACCCCCCAAAATATTTGGATGTACTGCATTCACTCATGTTTATGATCATGAACGTCACAAATTGGAGCCAAAAGCCAGAAAGTGTGTCTTCCTTGGTTACTCTCATACTCAAAAAGGCTATAAATGCTATTGTCCATTCACCAATAAATTTTACACTACCATGGATGTCACATTTTTTGAGTCTCAATCTTTTTTCTCCCTAAATTCCCCTCAGGGGAAGACTGAGCCTATTACAAGTAGTCTTGATGGAAATTTTTGGGAGATTGACGATCTAAATACCAGAATTGAGTCCCCTCAGTAAAAAATACCTGAGATTGATGGTCTAAATACCGAGTCACCTCAGCCAAAAATACCTATCCCGATCGTCCCAATTACACAGATAGAAGAGTCAGTTCCTATTATTTCCTGTAATAATGAAGATGATCAATTCAACCCAAATCGAAGTGACAAGCAACCTGAGACTCTTGTTTATTCTCGGCGACAAACGGTTCAAAGAGGAGTGGAGCCACCACAGCCTCAACAGCAAAGTCATGAATCCATCTCGTCCTTAGGTACTGAACAATCTACCCTTGTGCCTCAAGACAATACTAATGATCTTGATCTTCCTATTGCACTTAGGAAGGGTGTGAGATCGTGTACTCAACATCCAATTGCTCGATGTATTGGTTATAGTCATTTATCTTCAGCAGTTCAGACCTTGGCTCTCAATCTGGAAGCCAATGA

mRNA sequence

ATGGTTAAAACAGCCATGATGACTAATGTGCGCAAGGATGAGAGTTCCGACGGATCGAATACGACCTCAATTTCTCTCCCTAAAAGCACATCCACGACACCTCACATCTCTATCTCTGAAAACACTTCGCTCCAAATTACCGCTCCAAAACTCAACGGAAAAAATTTTCTGCAATGGTCTCAATCGGACCTCCTAGTTATTCGTGGCCGCAGTCGACTCGGGTACATCAATGGCACGATAGCAGAACCAGATGAAGCTGACCCTTCTTTTTCCGTGTGGGATGCACAAAACTCAATGGTCATGGCATGGCTCATTAACTCGATGGAGGAGGACATTAAAGAATCCTTCATCTTCTACTCAACAGCAAAGGATCTTTGGAATGCGCTCACTATGGCTTTTTCTGATTTTGATAACTCGGCTCAATTGTTTGAATTACGCAATAAGGCACGTTCCTTACGACAAGGTGAATCCGATGTCACCCAATACTATAGCTCATTACGTAGGTTGTGGGCTGAACTTGATTTATGTCTCAATCTCGAATGGGAGAACTCGAAGGATGCTGAACGCTTCCGCAAACACGTCGAGAAGGAACGAATTTATGATTTTCTTGCAGGTCTTCGTCCGGAATTAGATGATGTGCGTGGCCGCTTACTTGCCACAAAGCCAATCCCAGCCATTGACGAAATCTTCGCAGAAGTTCGCTGGGAGTCAAGCCGTAAACGTGTGATGATGGGTGATACACACACAAAACCTCTGTCCCTCTCACTGGAATCATCAGCTCTGGCGGCACGAGGTCCACCACCACCTTCATCCCGATCTACTCGTCGGAACAACCTATGGTGTGATCATTGGGATTATCGGCCACCTCCACTTACAAATACTCCATCTTCTCGAACCAGCTCCTCCGGCTATCAAGTGGGCCCTAGTGTGTCAAACTCCCAAGATTTGGCCACCTCTCTCCCTTCATTTTCGAAGGCACAACTTGAACAGCTCTATCGCCTCTTAACACCGCCGGTTGAGTCTACTCCTTCGTCAAGTTTTGTGGCACAACGAGGTATTTTTAGTGCAGCTTTAACAAGTCAGCAGCATTCCGATCAGTGGATCATAAATTCGGGTGCAACTGATCATATGACCGCTTTTCATGATATGTTTACCATGTACTCACCCAACCCGATTCAGACACATGTCAAGCTTGCAGATGGGTCATCGGCCATTATTAAGGGCTTTGGTTCTGTTATTCTTAGCCCAAACATTACATTGCACTCAGTGCTCCATGTGCCTAAATTATGTTGCAATCTAATTTCTGTTCAGAAGTTGACTCATGATTTAAAGTGTCAAGCCTTGTTCACTGACTCTAAGTGTTTGTTTCAGGACTTGATAACGGGAACGACGATTGGCAATGCTGATGGCTTTGAAGGGCTCTACTACTTCAGAGGACCAAGTCTAAGAAATAAACAAGTTCTCCAGATAGAAGAGTCAGTTCCTATTATTTCCTGTAATAATGAAGATGATCAATTCAACCCAAATCGAAGTGACAAGCAACCTGAGACTCTTGTTTATTCTCGGCGACAAACGGTTCAAAGAGGAGTGGAGCCACCACAGCCTCAACAGCAAAGTCATGAATCCATCTCGTCCTTAGGTACTGAACAATCTACCCTTGTGCCTCAAGACAATACTAATGATCTTGATCTTCCTATTGCACTTAGGAAGGACCTTGGCTCTCAATCTGGAAGCCAATGA

Coding sequence (CDS)

ATGGTTAAAACAGCCATGATGACTAATGTGCGCAAGGATGAGAGTTCCGACGGATCGAATACGACCTCAATTTCTCTCCCTAAAAGCACATCCACGACACCTCACATCTCTATCTCTGAAAACACTTCGCTCCAAATTACCGCTCCAAAACTCAACGGAAAAAATTTTCTGCAATGGTCTCAATCGGACCTCCTAGTTATTCGTGGCCGCAGTCGACTCGGGTACATCAATGGCACGATAGCAGAACCAGATGAAGCTGACCCTTCTTTTTCCGTGTGGGATGCACAAAACTCAATGGTCATGGCATGGCTCATTAACTCGATGGAGGAGGACATTAAAGAATCCTTCATCTTCTACTCAACAGCAAAGGATCTTTGGAATGCGCTCACTATGGCTTTTTCTGATTTTGATAACTCGGCTCAATTGTTTGAATTACGCAATAAGGCACGTTCCTTACGACAAGGTGAATCCGATGTCACCCAATACTATAGCTCATTACGTAGGTTGTGGGCTGAACTTGATTTATGTCTCAATCTCGAATGGGAGAACTCGAAGGATGCTGAACGCTTCCGCAAACACGTCGAGAAGGAACGAATTTATGATTTTCTTGCAGGTCTTCGTCCGGAATTAGATGATGTGCGTGGCCGCTTACTTGCCACAAAGCCAATCCCAGCCATTGACGAAATCTTCGCAGAAGTTCGCTGGGAGTCAAGCCGTAAACGTGTGATGATGGGTGATACACACACAAAACCTCTGTCCCTCTCACTGGAATCATCAGCTCTGGCGGCACGAGGTCCACCACCACCTTCATCCCGATCTACTCGTCGGAACAACCTATGGTGTGATCATTGGGATTATCGGCCACCTCCACTTACAAATACTCCATCTTCTCGAACCAGCTCCTCCGGCTATCAAGTGGGCCCTAGTGTGTCAAACTCCCAAGATTTGGCCACCTCTCTCCCTTCATTTTCGAAGGCACAACTTGAACAGCTCTATCGCCTCTTAACACCGCCGGTTGAGTCTACTCCTTCGTCAAGTTTTGTGGCACAACGAGGTATTTTTAGTGCAGCTTTAACAAGTCAGCAGCATTCCGATCAGTGGATCATAAATTCGGGTGCAACTGATCATATGACCGCTTTTCATGATATGTTTACCATGTACTCACCCAACCCGATTCAGACACATGTCAAGCTTGCAGATGGGTCATCGGCCATTATTAAGGGCTTTGGTTCTGTTATTCTTAGCCCAAACATTACATTGCACTCAGTGCTCCATGTGCCTAAATTATGTTGCAATCTAATTTCTGTTCAGAAGTTGACTCATGATTTAAAGTGTCAAGCCTTGTTCACTGACTCTAAGTGTTTGTTTCAGGACTTGATAACGGGAACGACGATTGGCAATGCTGATGGCTTTGAAGGGCTCTACTACTTCAGAGGACCAAGTCTAAGAAATAAACAAGTTCTCCAGATAGAAGAGTCAGTTCCTATTATTTCCTGTAATAATGAAGATGATCAATTCAACCCAAATCGAAGTGACAAGCAACCTGAGACTCTTGTTTATTCTCGGCGACAAACGGTTCAAAGAGGAGTGGAGCCACCACAGCCTCAACAGCAAAGTCATGAATCCATCTCGTCCTTAGGTACTGAACAATCTACCCTTGTGCCTCAAGACAATACTAATGATCTTGATCTTCCTATTGCACTTAGGAAGGACCTTGGCTCTCAATCTGGAAGCCAATGA

Protein sequence

MVKTAMMTNVRKDESSDGSNTTSISLPKSTSTTPHISISENTSLQITAPKLNGKNFLQWSQSDLLVIRGRSRLGYINGTIAEPDEADPSFSVWDAQNSMVMAWLINSMEEDIKESFIFYSTAKDLWNALTMAFSDFDNSAQLFELRNKARSLRQGESDVTQYYSSLRRLWAELDLCLNLEWENSKDAERFRKHVEKERIYDFLAGLRPELDDVRGRLLATKPIPAIDEIFAEVRWESSRKRVMMGDTHTKPLSLSLESSALAARGPPPPSSRSTRRNNLWCDHWDYRPPPLTNTPSSRTSSSGYQVGPSVSNSQDLATSLPSFSKAQLEQLYRLLTPPVESTPSSSFVAQRGIFSAALTSQQHSDQWIINSGATDHMTAFHDMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILSPNITLHSVLHVPKLCCNLISVQKLTHDLKCQALFTDSKCLFQDLITGTTIGNADGFEGLYYFRGPSLRNKQVLQIEESVPIISCNNEDDQFNPNRSDKQPETLVYSRRQTVQRGVEPPQPQQQSHESISSLGTEQSTLVPQDNTNDLDLPIALRKDLGSQSGSQ

Homology

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BLAST of Moc11g28340 vs. NCBI nr
Match: XP_022159153.1 (uncharacterized protein LOC111025577 [Momordica charantia])

HSP 1 Score: 801.2 bits (2068), Expect = 5.9e-228
Identity = 431/537 (80.26%), Postives = 443/537 (82.50%), Query Frame = 0


Query: 1   MVKTAMMTNVRKDESSDGSNTTSISLPKSTSTTPHISISENTSLQITAPKLNGKNFLQWS 60
           MVKTAMMT+VRKDESSDGSNTTSISLPKSTSTTPHISISENTSLQIT+PKLNGKNFLQWS
Sbjct: 1   MVKTAMMTDVRKDESSDGSNTTSISLPKSTSTTPHISISENTSLQITSPKLNGKNFLQWS 60

Query: 61  QSDLLVIRGRSRLGYINGTIAEPDEADPSFSVWDAQNSMVMAWLINSMEEDIKESFIFYS 120
           +S LLVIRGRSRLGYINGTIAEPDEADPSFSVWDAQNSMVMAWLINSMEEDIKESFIFYS
Sbjct: 61  RSALLVIRGRSRLGYINGTIAEPDEADPSFSVWDAQNSMVMAWLINSMEEDIKESFIFYS 120

Query: 121 TAKDLWNALTMAFSDFDNSAQLFELRNKARSLRQGESDVTQYYSSLRRLWAELDLCLNLE 180
           TAKDLWNALTMAFSDFDNSAQLFEL NKARSLRQGESDVTQYYSSLRRLWAELDLCLNLE
Sbjct: 121 TAKDLWNALTMAFSDFDNSAQLFELHNKARSLRQGESDVTQYYSSLRRLWAELDLCLNLE 180

Query: 181 WENSKDAERFRKHVEKERIYDFLAGLRPELDDVRGRLLATKPIPAIDEIFAEVRWESSRK 240
           WENSKDAERFRKHVEKERIYDFLAGLRPELDDVRGRLLATKPIPAIDEIFAEV WESSRK
Sbjct: 181 WENSKDAERFRKHVEKERIYDFLAGLRPELDDVRGRLLATKPIPAIDEIFAEVSWESSRK 240

Query: 241 RVMMGDTHTKPLSLSLESSALAARGPPPPSSRSTRRNNLWCDHWDYRPPPLTNTPSSRTS 300
           RVMMGDTHTKPLSLSLESSALAARGPPP                     P+         
Sbjct: 241 RVMMGDTHTKPLSLSLESSALAARGPPPSKQ------------------PI--------- 300

Query: 301 SSGYQVGPSVSNSQDLATSLPSFSKAQLEQLYRLLTPPVESTPSSSFVAQRGIFSAALTS 360
                                    AQLEQLYRLLT PVESTPSSSFVAQRGI SAALT 
Sbjct: 301 -------------------------AQLEQLYRLLTLPVESTPSSSFVAQRGISSAALTR 360

Query: 361 QQHSDQWIINSGATDHMTAFHDMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILSPNITL 420
           QQHSDQWI++SGATDHMTAFHDMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILSPNITL
Sbjct: 361 QQHSDQWILDSGATDHMTAFHDMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILSPNITL 420

Query: 421 HSVLHVPKLCCNLISVQKLTHDLKCQALFTDSKCLFQDLITGTTIGNADGFEGLYYFRGP 480
           HSVL VPKLCCNLISVQKLTHDLKCQALFTDSKCLFQDLITGTTIG+ADGFEGLYYFRGP
Sbjct: 421 HSVLXVPKLCCNLISVQKLTHDLKCQALFTDSKCLFQDLITGTTIGSADGFEGLYYFRGP 480

Query: 481 SLRNKQVLQIEESVPIISCNNEDDQFNPNRSDKQPETLVYSRRQT--VQRGVEPPQP 536
           SLRNKQVLQ   +        E    NPN   +    +V  R +T  + RG  P  P
Sbjct: 481 SLRNKQVLQGWTATYSSEVVPEPSVANPNSQLQGLGEIVDRRWETCWLGRGPSPSWP 485

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BLAST of Moc11g28340 vs. NCBI nr
Match: RVW98618.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 384.0 bits (985), Expect = 2.2e-102
Identity = 237/606 (39.11%), Postives = 337/606 (55.61%), Query Frame = 0


Query: 1   MVKTAMMTNVRKDESSDGSNTTSISLPKSTSTTPHISISENTSLQITAPKLNGKNFLQWS 60
           M KTA MT   K  SS  + T ++    + +++   S S  +S Q+T  KLNGKN+L+W+
Sbjct: 1   MAKTA-MTGASKTSSSSEATTENVQSETAMNSSADFSTS-LSSFQLTIHKLNGKNYLEWA 60

Query: 61  QSDLLVIRGRSRLGYINGTIAEPDEADPSFSVWDAQNSMVMAWLINSMEEDIKESFIFYS 120
           QS  L I GR +LG++NG +++P   DP+   W ++NS+V+AWLINSME  I +  +F  
Sbjct: 61  QSVKLAIDGRGKLGHLNGEVSKPVADDPNLKTWRSENSLVIAWLINSMEPAIGKPHLFLP 120

Query: 121 TAKDLWNALTMAFSDFDNSAQLFELRNKARSLRQGESDVTQYYSSLRRLWAELDLCLNLE 180
           TAKD+W A+   +SD +NS+Q+F+L++K    RQG+ +VT YY+ +  LW ELDLC   E
Sbjct: 121 TAKDVWEAVRDMYSDLENSSQIFDLKSKLWQSRQGDREVTTYYNQMVTLWQELDLCYEDE 180

Query: 181 WENSKDAERFRKHVEKERIYDFLAGLRPELDDVRGRLLATKPIPAIDEIFAEVRWESSRK 240
           W+   D+ R +K  E +R+Y FLAGL   LD+VRGR+L  KP+P+I E+F+EVR E +R+
Sbjct: 181 WDCPNDSVRHKKREENDRVYVFLAGLNHNLDEVRGRILGRKPLPSIREVFSEVRREEARR 240

Query: 241 RVMMGDTHTKPLSLSLESSALAARGPPPPSSRSTRRNNLWCDH-----------WDYRPP 300
           +VM+ D   K  +  +ESSAL ++G     S   RR   WCDH           W     
Sbjct: 241 KVMLTDPEPKS-NPEIESSALVSKG---SDSDGDRRKKPWCDHCKKPWHTKETCWKIHGK 300

Query: 301 PLTNTPSSRTSSSGYQVGPSVSNSQDLATSLPSFSKAQLEQLYRLLTPPVESTPSSSFVA 360
           P      + +    +Q   + S    + +  P+F+K QL  LY+L   P  S PS S   
Sbjct: 301 PQNFKKKNGSDGRAFQTMSADSQGPQINSEKPNFTKEQLSHLYKLFQSPQFSNPSCSLAQ 360

Query: 361 QRGIFSAALTSQQHSDQ--WIINSGATDHMTAFHDMFTMYSPNPIQTHVKLADGSSAIIK 420
           Q     AAL+S + +    WII+SGATDHMT    +F+ Y P      +K+ADGS + I 
Sbjct: 361 QGNYLIAALSSIKSNVHCPWIIDSGATDHMTGSSQIFSSYKPCAGNKKIKIADGSLSAIA 420

Query: 421 GFGSVILSPNITLHSVLHVPKLCCNLISVQKLTHDLKCQALFTDSKCLFQDLITGTTIGN 480
           G GSV +SP++TLH+VLHVP L CNL+S+ K+T D +CQA F  S C FQ+L +G TIGN
Sbjct: 421 GKGSVFISPSLTLHNVLHVPNLSCNLLSISKITQDHQCQANFYPSYCEFQELTSGRTIGN 480

Query: 481 ADGFEGLYYFRGPSLRNKQVLQI---------------EESVPIISCNNEDDQFNPNRSD 540
           A    GLY+F   S   K + +I                 S+P  + N+ +       S 
Sbjct: 481 AREIGGLYFFENGSESRKPIQKILGKKNGVLNIESLDGSSSLPSHNQNHSNTNNGNRTST 540

Query: 541 KQPETLVYSRRQTVQRGVEP-PQPQQQSHESISSLGTE-QSTLVPQDNTNDLDLPIALRK 577
           K  E + YSRR+   +   P P P    HE  S L  E  S+  P +N  D   P+    
Sbjct: 541 KNSELMTYSRRKHNSKESNPDPLP---GHE--SELREEPNSSECPGNNQTDSCQPVQFIS 595

[Close]

BLAST of Moc11g28340 vs. NCBI nr
Match: XP_024044152.1 (uncharacterized protein LOC18046468 isoform X2 [Citrus clementina])

HSP 1 Score: 376.3 bits (965), Expect = 4.7e-100
Identity = 206/456 (45.18%), Postives = 286/456 (62.72%), Query Frame = 0


Query: 46  ITAPKLNGKNFLQWSQSDLLVIRGRSRLGYINGTIAEPDEADPSFSVWDAQNSMVMAWLI 105
           IT  KLNG+NFLQWSQS  + IRG+ ++GY+ G+I EP E DP F  WDA NSM+M+WL+
Sbjct: 191 ITTHKLNGQNFLQWSQSVKMFIRGKGKIGYLTGSIKEPAEDDPKFQTWDADNSMIMSWLV 250

Query: 106 NSMEEDIKESFIFYSTAKDLWNALTMAFSDFDNSAQLFELRNKARSLRQGESDVTQYYSS 165
           NSME++I ++++F  TAKDLW+A+T  +SD  NSAQ+++L+ + R  +QG   VT+YY+ 
Sbjct: 251 NSMEQEIGQTYLFLPTAKDLWDAVTETYSDLGNSAQIYDLKTRIRETKQGSQGVTKYYNI 310

Query: 166 LRRLWAELDLCLNLEWENSKDAERFRKHVEKERIYDFLAGLRPELDDVRGRLLATKPIPA 225
           L+ LW ELD   + EWE + D+ +++K +EKER+++FLAGL  +LD+VRGR+L  +P+P+
Sbjct: 311 LKGLWQELDQYYDGEWECAVDSAKYKKMLEKERVFEFLAGLSSDLDEVRGRVLGKEPLPS 370

Query: 226 IDEIFAEVRWESSRKRVMMGDTHTKPLSLSLESSALAARGPPPP-------SSRSTRRNN 285
             E+F+ VR E SRK VMMG +       S E+SAL +  P  P         +S  ++ 
Sbjct: 371 TREVFSYVRREESRKNVMMGGS-------SAENSALISVTPEAPLVGGTKNLKKSDEKDR 430

Query: 286 LWCDH-----------WDY--RPPPLTNTPSSRTSSSGYQ-VGPSVSNSQDLATSLPSFS 345
           +WCD+           W    +PP L N   S   S G+Q VG +   +    T    F+
Sbjct: 431 VWCDYCHKPRHTRDACWKLHGKPPNLKNNKFSGKHSRGFQVVGENQPTTNTGETESQLFT 490

Query: 346 KAQLEQLYRLLTPPVESTPSSSF--VAQRG-IFSAALTSQQHSDQWIINSGATDHMTAFH 405
           K QLEQLYR L         SSF  +AQ+G  F+A     +  D WII+SGATDHMT+  
Sbjct: 491 KEQLEQLYRFLNQSQSLPNPSSFSSLAQKGNNFTALGVVYEKQDPWIIDSGATDHMTSHS 550

Query: 406 DMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILSPNITLHSVLHVPKLCCNLISVQKLTH 465
            +F+ Y P      +K+ADGS + + G GS+ +S N+ L SVLHVP L CNL+SV K+T 
Sbjct: 551 KLFSSYIPCSGSQKIKIADGSLSSVAGKGSIPISTNLVLTSVLHVPNLSCNLLSVSKITK 610

Query: 466 DLKCQALFTDSKCLFQDLITGTTIGNADGFEGLYYF 478
           DL C A F+ S C FQDL +G  IG+A   +GLYYF
Sbjct: 611 DLHCIAKFSPSYCEFQDLCSGKKIGSAREVDGLYYF 639

[Close]

BLAST of Moc11g28340 vs. NCBI nr
Match: XP_024044151.1 (uncharacterized protein LOC18046468 isoform X1 [Citrus clementina])

HSP 1 Score: 376.3 bits (965), Expect = 4.7e-100
Identity = 206/456 (45.18%), Postives = 286/456 (62.72%), Query Frame = 0


Query: 46  ITAPKLNGKNFLQWSQSDLLVIRGRSRLGYINGTIAEPDEADPSFSVWDAQNSMVMAWLI 105
           IT  KLNG+NFLQWSQS  + IRG+ ++GY+ G+I EP E DP F  WDA NSM+M+WL+
Sbjct: 383 ITTHKLNGQNFLQWSQSVKMFIRGKGKIGYLTGSIKEPAEDDPKFQTWDADNSMIMSWLV 442

Query: 106 NSMEEDIKESFIFYSTAKDLWNALTMAFSDFDNSAQLFELRNKARSLRQGESDVTQYYSS 165
           NSME++I ++++F  TAKDLW+A+T  +SD  NSAQ+++L+ + R  +QG   VT+YY+ 
Sbjct: 443 NSMEQEIGQTYLFLPTAKDLWDAVTETYSDLGNSAQIYDLKTRIRETKQGSQGVTKYYNI 502

Query: 166 LRRLWAELDLCLNLEWENSKDAERFRKHVEKERIYDFLAGLRPELDDVRGRLLATKPIPA 225
           L+ LW ELD   + EWE + D+ +++K +EKER+++FLAGL  +LD+VRGR+L  +P+P+
Sbjct: 503 LKGLWQELDQYYDGEWECAVDSAKYKKMLEKERVFEFLAGLSSDLDEVRGRVLGKEPLPS 562

Query: 226 IDEIFAEVRWESSRKRVMMGDTHTKPLSLSLESSALAARGPPPP-------SSRSTRRNN 285
             E+F+ VR E SRK VMMG +       S E+SAL +  P  P         +S  ++ 
Sbjct: 563 TREVFSYVRREESRKNVMMGGS-------SAENSALISVTPEAPLVGGTKNLKKSDEKDR 622

Query: 286 LWCDH-----------WDY--RPPPLTNTPSSRTSSSGYQ-VGPSVSNSQDLATSLPSFS 345
           +WCD+           W    +PP L N   S   S G+Q VG +   +    T    F+
Sbjct: 623 VWCDYCHKPRHTRDACWKLHGKPPNLKNNKFSGKHSRGFQVVGENQPTTNTGETESQLFT 682

Query: 346 KAQLEQLYRLLTPPVESTPSSSF--VAQRG-IFSAALTSQQHSDQWIINSGATDHMTAFH 405
           K QLEQLYR L         SSF  +AQ+G  F+A     +  D WII+SGATDHMT+  
Sbjct: 683 KEQLEQLYRFLNQSQSLPNPSSFSSLAQKGNNFTALGVVYEKQDPWIIDSGATDHMTSHS 742

Query: 406 DMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILSPNITLHSVLHVPKLCCNLISVQKLTH 465
            +F+ Y P      +K+ADGS + + G GS+ +S N+ L SVLHVP L CNL+SV K+T 
Sbjct: 743 KLFSSYIPCSGSQKIKIADGSLSSVAGKGSIPISTNLVLTSVLHVPNLSCNLLSVSKITK 802

Query: 466 DLKCQALFTDSKCLFQDLITGTTIGNADGFEGLYYF 478
           DL C A F+ S C FQDL +G  IG+A   +GLYYF
Sbjct: 803 DLHCIAKFSPSYCEFQDLCSGKKIGSAREVDGLYYF 831

[Close]

BLAST of Moc11g28340 vs. NCBI nr
Match: KAE8658400.1 (60S ribosomal protein L38 [Hibiscus syriacus])

HSP 1 Score: 372.9 bits (956), Expect = 5.2e-99
Identity = 231/557 (41.47%), Postives = 315/557 (56.55%), Query Frame = 0


Query: 17  DGSNTTSISLPKSTSTTPHISISENTSLQITAPKLNGKNFLQWSQSDLLVIRGRSRLGYI 76
           D S   S+S  +S S T +    +N S  IT+ KLNG NFLQWSQS  L IRGR + GY+
Sbjct: 241 DTSGIDSMSSTRSPSITLNTESFQNIS--ITSHKLNGNNFLQWSQSVKLFIRGRGKFGYL 300

Query: 77  NGTIAEPDEADPSFSVWDAQNSMVMAWLINSMEEDIKESFIFYSTAKDLWNALTMAFSDF 136
           +G   +P E + S   W+A+NSM+M+WLINSM+  +  +++F  TA D+WNA+   +SD 
Sbjct: 301 SGITTKPAEEEES-ERWEAENSMIMSWLINSMDPSVGRTYLFLPTAHDIWNAVNETYSDL 360

Query: 137 DNSAQLFELRNKARSLRQGESDVTQYYSSLRRLWAELDLCLNLEWENSKDAERFRKHVEK 196
            N+ Q FEL+ +   L+QGE  VTQYY+ L+ LW E+D+  + EW  +KD   F+K VEK
Sbjct: 361 GNAGQWFELKTRLWRLKQGEKTVTQYYTELKTLWQEVDMFSDYEWSCAKDRALFQKMVEK 420

Query: 197 ERIYDFLAGLRPELDDVRGRLLATKPIPAIDEIFAEVRWESSRKRVMMGDTHTKPLSLSL 256
           ER+++FL GL  ELD+VRGR+L  +P+P+  E+F+EVR E SR+ VM+G     P     
Sbjct: 421 ERVFEFLVGLNKELDEVRGRILGREPLPSTREVFSEVRREESRRTVMLGGHSPNP----T 480

Query: 257 ESSALAARGPPPPSSRSTRRNNLWCDH-----------WDYRPPPLTNTPSSRTSSSG-- 316
           ESSAL +  PP  + R   R+   C+H           W     P  N  ++R S +   
Sbjct: 481 ESSALFSGQPPRRNDRRNDRDRPICEHCNKPGHTKAKCWKLHGKPAENFSANRNSRNAKG 540

Query: 317 -YQVGPSVSNSQDLATSLPSFSKAQLEQLYRLL-------TPPVESTPSSSFVAQRGIFS 376
            +      S     A+ L +FSK QLEQLY+L+       TP   S  +SS +AQ+G + 
Sbjct: 541 FHASSEDASEEPKPASELSAFSKEQLEQLYQLMSSHSISNTPNPSSYIASSSLAQKGTYP 600

Query: 377 AALTSQQHSDQWIINSGATDHMTAFHDMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILS 436
            A  +   S+ WII+SGATDHMT    +F+ Y P      VK+ADGS   I G GS+I+S
Sbjct: 601 TAFIAGSKSNPWIIDSGATDHMTGNSSIFSSYFPLSGNLKVKIADGSLTSIAGKGSIIIS 660

Query: 437 PNITLHSVLHVPKLCCNLISVQKLTHDLKCQALFTDSKCLFQDLITGTTIGNADGFEGLY 496
           P++TL +VLHVPKL CNLISV ++ HD KC A  T +   FQD  +G  IGNA   +GLY
Sbjct: 661 PSLTLLNVLHVPKLSCNLISVNRIIHDCKCIATITFAGFEFQDPCSGKMIGNAKEVDGLY 720

Query: 497 YFRGPSLRNKQVLQIEESVPIISCNNE--------DDQFNPNRSDKQPET--------LV 537
           +    +  NKQV ++      +SC NE            N    + Q ET         V
Sbjct: 721 HLVTDNPSNKQVQKL-RCFTTLSCENEIMLWHYRISQPINSQPRETQVETNLEPPTELHV 780

[Close]

BLAST of Moc11g28340 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.5e-16
Identity = 93/442 (21.04%), Postives = 189/442 (42.76%), Query Frame = 0


Query: 50  KLNGKNFLQWSQSDLLVIRGRSRLGYINGTIAEP---------DEADPSFSVWDAQNSMV 109
           KL   N+L WS+    +  G    G+++G+   P            +P ++ W  Q+ ++
Sbjct: 25  KLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKLI 84

Query: 110 MAWLINSMEEDIKESFIFYSTAKDLWNALTMAFSDFDNSAQLFELRNKARSLRQGESDVT 169
            + ++ ++   ++ +    +TA  +W  L   +++  +   + +LR + +   +G   + 
Sbjct: 85  YSAVLGAISMSVQPAVSRATTAAQIWETLRKIYAN-PSYGHVTQLRTQLKQWTKGTKTID 144

Query: 170 QYYSSLRRLWAELDLCLNLEWENSKDAERFRKHVEKERIYDFLAGLRPELDDVRGRLLAT 229
            Y   L   + +L L L    ++ +  ER  +++ +E         +P +D    ++ A 
Sbjct: 145 DYMQGLVTRFDQLAL-LGKPMDHDEQVERVLENLPEE--------YKPVID----QIAAK 204

Query: 230 KPIPAIDEIFAEVRWESSRKRVMMGDTHTKPLSLSLESSALAARGPPPPSSRSTRRNNLW 289
              P + EI   +    S+   +   T      + + ++A++ R     ++ +    N  
Sbjct: 205 DTPPTLTEIHERLLNHESKILAVSSAT-----VIPITANAVSHRNTTTTNNNNNGNRN-- 264

Query: 290 CDHWDYRPPPLTNTPSSRTSSSGY----QVGPSVSNSQDLATSLPSFSKAQLEQLYRLLT 349
            + +D R     + P  ++S++ +    Q  P +   Q     +   S  +  QL   L+
Sbjct: 265 -NRYDNRNNNNNSKPWQQSSTNFHPNNNQSKPYLGKCQ--ICGVQGHSAKRCSQLQHFLS 324

Query: 350 PPVESTPSSSFVAQRGIFSAALTSQQHSDQWIINSGATDHMTAFHDMFTMYSPNPIQTHV 409
                 P S F   +   + AL S   S+ W+++SGAT H+T+  +  +++ P      V
Sbjct: 325 SVNSQQPPSPFTPWQPRANLALGSPYSSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDV 384

Query: 410 KLADGSSAIIKGFGSVILSPN---ITLHSVLHVPKLCCNLISVQKLTHDLKCQALFTDSK 469
            +ADGS+  I   GS  LS     + LH++L+VP +  NLISV +L +       F  + 
Sbjct: 385 MVADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPAS 442

Query: 470 CLFQDLITGTTIGNADGFEGLY 476
              +DL TG  +      + LY
Sbjct: 445 FQVKDLNTGVPLLQGKTKDELY 442

[Close]

BLAST of Moc11g28340 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.2e-11
Identity = 89/445 (20.00%), Postives = 175/445 (39.33%), Query Frame = 0


Query: 50  KLNGKNFLQWSQSDLLVIRGRSRLGYINGTIAEP---------DEADPSFSVWDAQNSMV 109
           KL   N+L WS+    +  G    G+++G+   P            +P ++ W  Q+ ++
Sbjct: 25  KLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGTDAVPRVNPDYTRWRRQDKLI 84

Query: 110 MAWLINSMEEDIKESFIFYSTAKDLWNALTMAFSDFDNSAQLFELRNKARSLRQGESDVT 169
            + ++ ++   ++ +    +TA  +W  L   +++  +   + +LR   R          
Sbjct: 85  YSAILGAISMSVQPAVSRATTAAQIWETLRKIYAN-PSYGHVTQLRFITR---------- 144

Query: 170 QYYSSLRRLWAELDLCLNLEWENSKDAERFRKHVEKERIYDFLAGLRPELDDVRGRLLAT 229
             +  L  L   +D                      E++   L  L  +   V  ++ A 
Sbjct: 145 --FDQLALLGKPMD--------------------HDEQVERVLENLPDDYKPVIDQIAAK 204

Query: 230 KPIPAIDEIFAEVRWESSRKRVMMGDTHTKPLSLSLESSALA-------ARGPPPPSSRS 289
              P++ EI   +    S K + +      P++ ++ +            RG     + +
Sbjct: 205 DTPPSLTEIHERLINRES-KLLALNSAEVVPITANVVTHRNTNTNRNQNNRGDNRNYNNN 264

Query: 290 TRRNNLWCDHWDYRPPPLTNTPSSRTSSSGYQVGPSVSNSQDLATSLPSFSKAQLEQLYR 349
             R+N W               SS + S   Q  P +   Q    S+   S  +  QL++
Sbjct: 265 NNRSNSW------------QPSSSGSRSDNRQPKPYLGRCQ--ICSVQGHSAKRCPQLHQ 324

Query: 350 LLTPPVESTPSSSFVAQRGIFSAALTSQQHSDQWIINSGATDHMTAFHDMFTMYSPNPIQ 409
             +   +   +S F   +   + A+ S  +++ W+++SGAT H+T+  +  + + P    
Sbjct: 325 FQSTTNQQQSTSPFTPWQPRANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGG 384

Query: 410 THVKLADGSSAIIKGFGSVIL---SPNITLHSVLHVPKLCCNLISVQKLTHDLKCQALFT 469
             V +ADGS+  I   GS  L   S ++ L+ VL+VP +  NLISV +L +  +    F 
Sbjct: 385 DDVMIADGSTIPITHTGSASLPTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFF 421

Query: 470 DSKCLFQDLITGTTIGNADGFEGLY 476
            +    +DL TG  +      + LY
Sbjct: 445 PASFQVKDLNTGVPLLQGKTKDELY 421

[Close]

BLAST of Moc11g28340 vs. ExPASy TrEMBL
Match: A0A6J1DY12 (uncharacterized protein LOC111025577 OS=Momordica charantia OX=3673 GN=LOC111025577 PE=4 SV=1)

HSP 1 Score: 801.2 bits (2068), Expect = 2.8e-228
Identity = 431/537 (80.26%), Postives = 443/537 (82.50%), Query Frame = 0


Query: 1   MVKTAMMTNVRKDESSDGSNTTSISLPKSTSTTPHISISENTSLQITAPKLNGKNFLQWS 60
           MVKTAMMT+VRKDESSDGSNTTSISLPKSTSTTPHISISENTSLQIT+PKLNGKNFLQWS
Sbjct: 1   MVKTAMMTDVRKDESSDGSNTTSISLPKSTSTTPHISISENTSLQITSPKLNGKNFLQWS 60

Query: 61  QSDLLVIRGRSRLGYINGTIAEPDEADPSFSVWDAQNSMVMAWLINSMEEDIKESFIFYS 120
           +S LLVIRGRSRLGYINGTIAEPDEADPSFSVWDAQNSMVMAWLINSMEEDIKESFIFYS
Sbjct: 61  RSALLVIRGRSRLGYINGTIAEPDEADPSFSVWDAQNSMVMAWLINSMEEDIKESFIFYS 120

Query: 121 TAKDLWNALTMAFSDFDNSAQLFELRNKARSLRQGESDVTQYYSSLRRLWAELDLCLNLE 180
           TAKDLWNALTMAFSDFDNSAQLFEL NKARSLRQGESDVTQYYSSLRRLWAELDLCLNLE
Sbjct: 121 TAKDLWNALTMAFSDFDNSAQLFELHNKARSLRQGESDVTQYYSSLRRLWAELDLCLNLE 180

Query: 181 WENSKDAERFRKHVEKERIYDFLAGLRPELDDVRGRLLATKPIPAIDEIFAEVRWESSRK 240
           WENSKDAERFRKHVEKERIYDFLAGLRPELDDVRGRLLATKPIPAIDEIFAEV WESSRK
Sbjct: 181 WENSKDAERFRKHVEKERIYDFLAGLRPELDDVRGRLLATKPIPAIDEIFAEVSWESSRK 240

Query: 241 RVMMGDTHTKPLSLSLESSALAARGPPPPSSRSTRRNNLWCDHWDYRPPPLTNTPSSRTS 300
           RVMMGDTHTKPLSLSLESSALAARGPPP                     P+         
Sbjct: 241 RVMMGDTHTKPLSLSLESSALAARGPPPSKQ------------------PI--------- 300

Query: 301 SSGYQVGPSVSNSQDLATSLPSFSKAQLEQLYRLLTPPVESTPSSSFVAQRGIFSAALTS 360
                                    AQLEQLYRLLT PVESTPSSSFVAQRGI SAALT 
Sbjct: 301 -------------------------AQLEQLYRLLTLPVESTPSSSFVAQRGISSAALTR 360

Query: 361 QQHSDQWIINSGATDHMTAFHDMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILSPNITL 420
           QQHSDQWI++SGATDHMTAFHDMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILSPNITL
Sbjct: 361 QQHSDQWILDSGATDHMTAFHDMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILSPNITL 420

Query: 421 HSVLHVPKLCCNLISVQKLTHDLKCQALFTDSKCLFQDLITGTTIGNADGFEGLYYFRGP 480
           HSVL VPKLCCNLISVQKLTHDLKCQALFTDSKCLFQDLITGTTIG+ADGFEGLYYFRGP
Sbjct: 421 HSVLXVPKLCCNLISVQKLTHDLKCQALFTDSKCLFQDLITGTTIGSADGFEGLYYFRGP 480

Query: 481 SLRNKQVLQIEESVPIISCNNEDDQFNPNRSDKQPETLVYSRRQT--VQRGVEPPQP 536
           SLRNKQVLQ   +        E    NPN   +    +V  R +T  + RG  P  P
Sbjct: 481 SLRNKQVLQGWTATYSSEVVPEPSVANPNSQLQGLGEIVDRRWETCWLGRGPSPSWP 485

[Close]

BLAST of Moc11g28340 vs. ExPASy TrEMBL
Match: A0A438IPH4 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_3236 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 1.1e-102
Identity = 237/606 (39.11%), Postives = 337/606 (55.61%), Query Frame = 0


Query: 1   MVKTAMMTNVRKDESSDGSNTTSISLPKSTSTTPHISISENTSLQITAPKLNGKNFLQWS 60
           M KTA MT   K  SS  + T ++    + +++   S S  +S Q+T  KLNGKN+L+W+
Sbjct: 1   MAKTA-MTGASKTSSSSEATTENVQSETAMNSSADFSTS-LSSFQLTIHKLNGKNYLEWA 60

Query: 61  QSDLLVIRGRSRLGYINGTIAEPDEADPSFSVWDAQNSMVMAWLINSMEEDIKESFIFYS 120
           QS  L I GR +LG++NG +++P   DP+   W ++NS+V+AWLINSME  I +  +F  
Sbjct: 61  QSVKLAIDGRGKLGHLNGEVSKPVADDPNLKTWRSENSLVIAWLINSMEPAIGKPHLFLP 120

Query: 121 TAKDLWNALTMAFSDFDNSAQLFELRNKARSLRQGESDVTQYYSSLRRLWAELDLCLNLE 180
           TAKD+W A+   +SD +NS+Q+F+L++K    RQG+ +VT YY+ +  LW ELDLC   E
Sbjct: 121 TAKDVWEAVRDMYSDLENSSQIFDLKSKLWQSRQGDREVTTYYNQMVTLWQELDLCYEDE 180

Query: 181 WENSKDAERFRKHVEKERIYDFLAGLRPELDDVRGRLLATKPIPAIDEIFAEVRWESSRK 240
           W+   D+ R +K  E +R+Y FLAGL   LD+VRGR+L  KP+P+I E+F+EVR E +R+
Sbjct: 181 WDCPNDSVRHKKREENDRVYVFLAGLNHNLDEVRGRILGRKPLPSIREVFSEVRREEARR 240

Query: 241 RVMMGDTHTKPLSLSLESSALAARGPPPPSSRSTRRNNLWCDH-----------WDYRPP 300
           +VM+ D   K  +  +ESSAL ++G     S   RR   WCDH           W     
Sbjct: 241 KVMLTDPEPKS-NPEIESSALVSKG---SDSDGDRRKKPWCDHCKKPWHTKETCWKIHGK 300

Query: 301 PLTNTPSSRTSSSGYQVGPSVSNSQDLATSLPSFSKAQLEQLYRLLTPPVESTPSSSFVA 360
           P      + +    +Q   + S    + +  P+F+K QL  LY+L   P  S PS S   
Sbjct: 301 PQNFKKKNGSDGRAFQTMSADSQGPQINSEKPNFTKEQLSHLYKLFQSPQFSNPSCSLAQ 360

Query: 361 QRGIFSAALTSQQHSDQ--WIINSGATDHMTAFHDMFTMYSPNPIQTHVKLADGSSAIIK 420
           Q     AAL+S + +    WII+SGATDHMT    +F+ Y P      +K+ADGS + I 
Sbjct: 361 QGNYLIAALSSIKSNVHCPWIIDSGATDHMTGSSQIFSSYKPCAGNKKIKIADGSLSAIA 420

Query: 421 GFGSVILSPNITLHSVLHVPKLCCNLISVQKLTHDLKCQALFTDSKCLFQDLITGTTIGN 480
           G GSV +SP++TLH+VLHVP L CNL+S+ K+T D +CQA F  S C FQ+L +G TIGN
Sbjct: 421 GKGSVFISPSLTLHNVLHVPNLSCNLLSISKITQDHQCQANFYPSYCEFQELTSGRTIGN 480

Query: 481 ADGFEGLYYFRGPSLRNKQVLQI---------------EESVPIISCNNEDDQFNPNRSD 540
           A    GLY+F   S   K + +I                 S+P  + N+ +       S 
Sbjct: 481 AREIGGLYFFENGSESRKPIQKILGKKNGVLNIESLDGSSSLPSHNQNHSNTNNGNRTST 540

Query: 541 KQPETLVYSRRQTVQRGVEP-PQPQQQSHESISSLGTE-QSTLVPQDNTNDLDLPIALRK 577
           K  E + YSRR+   +   P P P    HE  S L  E  S+  P +N  D   P+    
Sbjct: 541 KNSELMTYSRRKHNSKESNPDPLP---GHE--SELREEPNSSECPGNNQTDSCQPVQFIS 595

[Close]

BLAST of Moc11g28340 vs. ExPASy TrEMBL
Match: A0A6A2WU09 (60S ribosomal protein L38 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116971pilonHSYRG00380 PE=3 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 2.5e-99
Identity = 231/557 (41.47%), Postives = 315/557 (56.55%), Query Frame = 0


Query: 17  DGSNTTSISLPKSTSTTPHISISENTSLQITAPKLNGKNFLQWSQSDLLVIRGRSRLGYI 76
           D S   S+S  +S S T +    +N S  IT+ KLNG NFLQWSQS  L IRGR + GY+
Sbjct: 241 DTSGIDSMSSTRSPSITLNTESFQNIS--ITSHKLNGNNFLQWSQSVKLFIRGRGKFGYL 300

Query: 77  NGTIAEPDEADPSFSVWDAQNSMVMAWLINSMEEDIKESFIFYSTAKDLWNALTMAFSDF 136
           +G   +P E + S   W+A+NSM+M+WLINSM+  +  +++F  TA D+WNA+   +SD 
Sbjct: 301 SGITTKPAEEEES-ERWEAENSMIMSWLINSMDPSVGRTYLFLPTAHDIWNAVNETYSDL 360

Query: 137 DNSAQLFELRNKARSLRQGESDVTQYYSSLRRLWAELDLCLNLEWENSKDAERFRKHVEK 196
            N+ Q FEL+ +   L+QGE  VTQYY+ L+ LW E+D+  + EW  +KD   F+K VEK
Sbjct: 361 GNAGQWFELKTRLWRLKQGEKTVTQYYTELKTLWQEVDMFSDYEWSCAKDRALFQKMVEK 420

Query: 197 ERIYDFLAGLRPELDDVRGRLLATKPIPAIDEIFAEVRWESSRKRVMMGDTHTKPLSLSL 256
           ER+++FL GL  ELD+VRGR+L  +P+P+  E+F+EVR E SR+ VM+G     P     
Sbjct: 421 ERVFEFLVGLNKELDEVRGRILGREPLPSTREVFSEVRREESRRTVMLGGHSPNP----T 480

Query: 257 ESSALAARGPPPPSSRSTRRNNLWCDH-----------WDYRPPPLTNTPSSRTSSSG-- 316
           ESSAL +  PP  + R   R+   C+H           W     P  N  ++R S +   
Sbjct: 481 ESSALFSGQPPRRNDRRNDRDRPICEHCNKPGHTKAKCWKLHGKPAENFSANRNSRNAKG 540

Query: 317 -YQVGPSVSNSQDLATSLPSFSKAQLEQLYRLL-------TPPVESTPSSSFVAQRGIFS 376
            +      S     A+ L +FSK QLEQLY+L+       TP   S  +SS +AQ+G + 
Sbjct: 541 FHASSEDASEEPKPASELSAFSKEQLEQLYQLMSSHSISNTPNPSSYIASSSLAQKGTYP 600

Query: 377 AALTSQQHSDQWIINSGATDHMTAFHDMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILS 436
            A  +   S+ WII+SGATDHMT    +F+ Y P      VK+ADGS   I G GS+I+S
Sbjct: 601 TAFIAGSKSNPWIIDSGATDHMTGNSSIFSSYFPLSGNLKVKIADGSLTSIAGKGSIIIS 660

Query: 437 PNITLHSVLHVPKLCCNLISVQKLTHDLKCQALFTDSKCLFQDLITGTTIGNADGFEGLY 496
           P++TL +VLHVPKL CNLISV ++ HD KC A  T +   FQD  +G  IGNA   +GLY
Sbjct: 661 PSLTLLNVLHVPKLSCNLISVNRIIHDCKCIATITFAGFEFQDPCSGKMIGNAKEVDGLY 720

Query: 497 YFRGPSLRNKQVLQIEESVPIISCNNE--------DDQFNPNRSDKQPET--------LV 537
           +    +  NKQV ++      +SC NE            N    + Q ET         V
Sbjct: 721 HLVTDNPSNKQVQKL-RCFTTLSCENEIMLWHYRISQPINSQPRETQVETNLEPPTELHV 780

[Close]

BLAST of Moc11g28340 vs. ExPASy TrEMBL
Match: A0A7J0DNJ6 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0061040 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 6.2e-98
Identity = 242/608 (39.80%), Postives = 345/608 (56.74%), Query Frame = 0


Query: 19  SNTTSISLPKSTSTTPHISISENTSLQITAPKLNGKNFLQWSQSDLLVIRGRSRLGYING 78
           S+  + S PK   T    S+      QIT+ KL+G+N+LQWS+S  L+IRG  R GY++G
Sbjct: 2   SSDAAQSNPKIVPTASDNSL----PFQITSFKLSGRNYLQWSRSVQLIIRGMGRFGYLDG 61

Query: 79  TIAEPDEADPSFSVWDAQNSMVMAWLINSMEEDIKESFIFYSTAKDLWNALTMAFSDFDN 138
           +I +P   DPSF +WD QNSMVMAWL+NSM++ I E ++ Y TAK +W+A+T+A+SD ++
Sbjct: 62  SIPKPPSTDPSFDIWDIQNSMVMAWLLNSMDDTIAEMYLLYPTAKAIWDAVTLAYSDLED 121

Query: 139 SAQLFELRNKARSLRQGESDVTQYYSSLRRLWAELDLCLNLEWENSKDAERFRKHVEKER 198
           S+Q+F+LR+++R+LRQ E  VTQY+SSL +LW ELDL     W  + + E +RK + KER
Sbjct: 122 SSQMFDLRHRSRNLRQDEGTVTQYFSSLTKLWQELDLFTQPAWTAAANNEIYRKLLAKER 181

Query: 199 IYDFLAGLRPELDDVRGRLLATKPIPAIDEIFAEVRWESSRKRVMMGD-THTKPLSLSLE 258
            Y+FL GL P LDDVRGR+L+ KP+P++D IF+EVR E  R+R+M+G        S++ +
Sbjct: 182 TYNFLTGLNPSLDDVRGRILSIKPLPSLDAIFSEVRREEQRRRIMLGGFPMASASSINSD 241

Query: 259 SSALAARGPPPPSSRSTRRNNLWCDH-----------WDYRPPPLTNTPSSRTSSSGYQV 318
           +SA+AAR    P SR  R+  LWCDH           W     P+   P S+  S G + 
Sbjct: 242 ASAMAARF---PDSRGPRK-PLWCDHCNRPHHTKETCWKLHGKPVDWVPRSQRKSDGSK- 301

Query: 319 GPSVSNSQDLATSLP-SFSKAQLEQLYRLLTPPVESTPSSSFVAQRGIFSAALTSQQHSD 378
            P V+   D A+S   +F++AQL+Q+ +L +       SS+ +   GI S+ +     S 
Sbjct: 302 -PPVAAKSDAASSSSLTFTQAQLDQIGKLFS-------SSASLMAHGISSSTVNESATSG 361

Query: 379 Q-WIINSGATDHMTAFHDMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILSPNITLHSVL 438
           + WII+SGA++HM++   +F+ YS       V LADGS + + G G+V LSPN+ LH+VL
Sbjct: 362 EFWIIDSGASEHMSSARTIFSSYSRYSGTRTVTLADGSVSPVVGIGTVTLSPNLLLHNVL 421

Query: 439 HVPKLCCNLISVQKLTHDLKCQALFTDSKCLFQDLITGTTIGNADGFEGLYYF------- 498
            VPKL  NL+S+ KLT D  C A  + + C+FQD  +G TIG A    GLYYF       
Sbjct: 422 FVPKLSYNLLSISKLTRDSDCVANISQNLCVFQDRDSGRTIGRAAEVAGLYYFLRADSQV 481

Query: 499 ------RG--PSLRNKQVLQIEESV--PIISCNNEDDQFNPNRS---------------- 558
                 RG   S R+ Q+  +   +  P    ++    F   RS                
Sbjct: 482 RYCQVARGSVSSHRHHQIKLLHHRLGHPRSFNSSRSRNFKSGRSTITKKNATYLATNISC 541

Query: 559 ---------DKQPETLVYSRRQTVQRGVEPPQPQQQSHESISSLGTEQSTLVPQDNTNDL 571
                      +P  L Y RR+ V    +P  P    H S SS G++ + L PQ     L
Sbjct: 542 VTPVPNTSRPIEPFPLTYCRRKHVDTKSDPISP--APHLSASSSGSDYTEL-PQ-----L 584

[Close]

BLAST of Moc11g28340 vs. ExPASy TrEMBL
Match: A0A6A2ZFN0 (Gag-Pol-p199 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110895pilonHSYRG00186 PE=3 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 1.7e-92
Identity = 219/556 (39.39%), Postives = 300/556 (53.96%), Query Frame = 0


Query: 59  WSQSDLLVIRGRSRLGYINGTIAEPDEADPSFSVWDAQNSMVMAWLINSMEEDIKESFIF 118
           WSQS  L IRG  + GY++GT  +  E D     W+A+NSM+M+WLINSM+  +  +++F
Sbjct: 292 WSQSVKLFIRGHGKFGYLSGTTTKSAEEDEESERWEAENSMIMSWLINSMDPSVGRTYLF 351

Query: 119 YSTAKDLWNALTMAFSDFDNSAQLFELRNKARSLRQGESDVTQYYSSLRRLWAELDLCLN 178
             TA D+WNA+   +SD  N+ Q FEL+ +   L+QGE  VTQYY+ L+ LW E+D+  +
Sbjct: 352 LPTAHDIWNAVNETYSDLGNAGQWFELKTRLWKLKQGEKTVTQYYTELKTLWQEVDMFSD 411

Query: 179 LEWENSKDAERFRKHVEKERIYDFLAGLRPELDDVRGRLLATKPIPAIDEIFAEVRWESS 238
            EW  +KD   F+K VEKE +++FL GL  ELD+VRGR+L  +P+P+  E+F+EVR E S
Sbjct: 412 YEWSCAKDKALFQKMVEKECVFEFLVGLNMELDEVRGRILGREPLPSTREVFSEVRREES 471

Query: 239 RKRVMMGDTHTKPLSLSLESSALAARGPPPPSSRSTRRNNLWCDH-----------WDYR 298
           R+ +M+G     P     ESSAL +  P   + R   R+   C+H           W   
Sbjct: 472 RRTIMLGGHSPNP----TESSALFSGQPLRRNDRRNDRDRPICEHCNKPGHTKAKCWKLH 531

Query: 299 PPPLTNTPSSRTSSSG---YQVGPSVSNSQDLATSLPSFSKAQLEQLYRLL-------TP 358
             P  N  ++R S +    Y      S     AT L +FSK QLEQLY+L+       TP
Sbjct: 532 GKPAENFSANRNSRNAKGFYASSEDASEEPKPATELSAFSKEQLEQLYQLMSSHSISNTP 591

Query: 359 PVESTPSSSFVAQRGIFSAALTSQQHSDQWIINSGATDHMTAFHDMFTMYSPNPIQTHVK 418
              S  +SS +AQ+G +  A  +   S+ WII+SGATDHMT    +F+ Y P      VK
Sbjct: 592 NPSSYIASSSLAQKGTYPTAFIAGSKSNPWIIDSGATDHMTDNSSIFSSYFPLSGNLKVK 651

Query: 419 LADGSSAIIKGFGSVILSPNITLHSVLHVPKLCCNLISVQKLTHDLKCQALFTDSKCLFQ 478
           +ADGS   I G GS+I+SP++TL +VLHVPKL CNLISV ++ HD KC A  T +   FQ
Sbjct: 652 IADGSLTSIAGKGSIIISPSLTLLNVLHVPKLSCNLISVNRIIHDCKCIATITFAGFEFQ 711

Query: 479 DLITGTTIGNADGFEGLYYFRGPSLRNKQVLQIEESVPIISCNNE--------DDQFNPN 538
           D  +G  IGNA   +GLY+    +  +KQV Q       + C NE            N  
Sbjct: 712 DPCSGKMIGNAKEVDGLYHLVTDNPSDKQV-QKPRCFTTLYCENEIMLWHYRISQPINSQ 771

Query: 539 RSDKQPET--------LVYSRRQTVQRGVEPPQPQQQSHESISSLGTEQSTLVPQDN--- 575
             + Q ET         VYSRR T    V P     Q  +S    GT   + +   N   
Sbjct: 772 PRETQVETNLEPPTELRVYSRRMTRPSNVPPAPKVCQPSDSTMVQGTTSLSPISSPNLEP 831

[Close]

BLAST of Moc11g28340 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 105.9 bits (263), Expect = 1.1e-22
Identity = 61/190 (32.11%), Postives = 100/190 (52.63%), Query Frame = 0


Query: 55  NFLQWSQSDLLVIRGRSRLGYINGTIAEPDEADPSFSVWDAQNSMVMAWLINSMEEDIKE 114
           N++ W       +R   + G+I+GT+ +PD   P +  W+  N+MVM WL+NSM + + E
Sbjct: 41  NYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLE 100

Query: 115 SFIFYSTAKDLWNALTMAFSDFDNSAQLFELRNKARSLRQGESDVTQYYSSLRRLWAELD 174
           S ++  TA  +W  L   F    +  ++++LR +  +LRQG   V +Y+  L ++W EL 
Sbjct: 101 SVMYAETAHKMWEDLRRVFVPCVD-LKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELS 160

Query: 175 --------LCLNLEWENSKDAERFRKHVEKERIYDFLAGLR--PELDDVRGRLLATKPIP 234
                    C     E +K AE  R   EKE+ Y+FL GL+     + V  +++  KP P
Sbjct: 161 EYAPIPECKCGGCNCECTKRAEEAR---EKEQRYEFLMGLKLNQGFEAVTTKIMFQKPPP 220

The following BLAST results are available for this feature:

BLAST of Moc11g28340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159153.1	5.9e-228	80.26	uncharacterized protein LOC111025577 [Momordica charantia]	[more]
RVW98618.1	2.2e-102	39.11	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
XP_024044152.1	4.7e-100	45.18	uncharacterized protein LOC18046468 isoform X2 [Citrus clementina]	[more]
XP_024044151.1	4.7e-100	45.18	uncharacterized protein LOC18046468 isoform X1 [Citrus clementina]	[more]
KAE8658400.1	5.2e-99	41.47	60S ribosomal protein L38 [Hibiscus syriacus]	[more]

BLAST of Moc11g28340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.5e-16	21.04	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	3.2e-11	20.00	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Moc11g28340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DY12	2.8e-228	80.26	uncharacterized protein LOC111025577 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A438IPH4	1.1e-102	39.11	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A6A2WU09	2.5e-99	41.47	60S ribosomal protein L38 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116971pil...	[more]
A0A7J0DNJ6	6.2e-98	39.80	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0061040 PE=4 SV=1	[more]
A0A6A2ZFN0	1.7e-92	39.39	Gag-Pol-p199 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110895pilonHSYRG00186 ...	[more]

BLAST of Moc11g28340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21280.1	1.1e-22	32.11	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 103..207 e-value: 2.3E-6 score: 27.8
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 39..84 e-value: 3.3E-12 score: 46.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 290..316
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 524..579
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 524..559
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 258..277
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 34..228
None	No IPR available	PANTHER	PTHR37610:SF41	SUBFAMILY NOT NAMED	coord: 34..228

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g28340.1	Moc11g28340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0016787	hydrolase activity