Moc11g28080 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc11g28080
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Locationchr11: 20484552 .. 20486041 (-)
RNA-Seq ExpressionMoc11g28080
SyntenyMoc11g28080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCCTGCAGATGAAGTTGGAGCCTTCTTCCGTGATGACAGCGCCGCAACGCTGTCTTGTAGCACCATGGCGCTACAAACTTGCGCGTCCGTCACAATTCTGGGACAATGCCATGGCGCTCACTAATGGCGCCATGGCACTGTAGCGATGCCCTCTCATAAATAAAAGATTACAGCGCTGTTTGGAGGGACTTTTGGACATTCTTACATTGGGAATTGGAGCTTTTAGAGGCTTTCGCTCGAGAGTTGAAGCAAGGAAGGCGATGAGACGATTTTCGAAGGCTCATGATCGTGGAGATTGAGTCGGGGATGGTCAATCGACACAATTACTTTATTTTCTCTCCTTTCCCTTATCTTTTCTAGATTTATTATGAAATTCTCAGTGGGATTTTGTTGTATTTTAATGAACATGAGCAACTAAATTTCTTGTTATGGGGATTGATGTAGCCGCTGAATTTATAAGTTGGATTTATTAAAAAATTGTCTTGATTGATATATTCTTAATCTATTTGTACATTTATTTGCTTGATGCTTTTAATCTCTTGATCATGGATTAATTGATGTTAAATTTGAATCTTACGCTTGGGAAAAGTGGTTTAGATTGGAACTTGAATGCATGACTGTGGTAGTTCTAAGTAGAGATTTAGAATTTCTTTAGAGGTTGTTAAAAGAACAAGACTTAAGGCCTTGCTTGTTGATGAAACTAGATAGGGATATTGGTTTCTTAACAAATGTGAGAATTAATTGTGCTCAGGAGAGATGGTTATGATTAATGATTTCTTGACTTATAGATTAATTGTATATTCAATCTTGGCATGTTTAATTGTCTGCTTGTAGATGTTTGTGGTACTGTGAGTTATGAAGATGAACGGAGTAACTGATGATGCTACTCGCTTACACCTTTTCCCTTTTTCTTTGCAGGATAAGGCGATAGATTGGTTGAAATCCTTACCACCAGGTAGTGTTAATTCTTGGCAGGAGATGGTTCAGACGTTTCTCACAAAATTTTTCCCACCTGCCAAGACAGCTCAGCTTAGAACAGAGATTGTATCATTCAGGCAATACGATTATGAGCAACTATTTGAGTCCTGGGAGAGGTACAAGGAGCTTTTGAGGAAATGCCCACAACATGGATATCCGGATTGGCTGTAGATTCAAATGTTTTACAATGGACTAAATGGACAAATAAGAACTATACTGGATGTTGCAGCTGGAGGCATATTACTATCCAAAACACTAGAGAATGCTTACATCTTACTGGAGAATATGGCGGCCAATAGCTTTCAATGGCCCCATGAGAGATCGAATGCCAAAAGAGTTGCTAGAATCTATGAAATCGACGAGGTAAGTTCCCTAAAAGCTCAAGTTCAAGCTCTGACTACTGTTGTGTCTAAACTTTCAAGACCAAGAACTTCGCATTCAAATGAGTTGGTGGCAGCAGCAGATACATATTCTTACTATGAGGAGCCAACCATCGAGCAAACTTAG

mRNA sequence

ATGGCGCCTGCAGATGAAGTTGGAGCCTTCTTCCGTGATGACAGCGCCGCAACGCTGTCTTGTAGCACCATGGCGCTACAAACTTGCGCGTCCACGTTTCTCACAAAATTTTTCCCACCTGCCAAGACAGCTCAGCTTAGAACAGAGATTGTATCATTCAGGCAATACGATTATGAGCAACTATTTGAGTCCTGGGAGAGAACTATACTGGATGTTGCAGCTGGAGGCATATTACTATCCAAAACACTAGAGAATGCTTACATCTTACTGGAGAATATGGCGGCCAATAGCTTTCAATGGCCCCATGAGAGATCGAATGCCAAAAGAGTTGCTAGAATCTATGAAATCGACGAGGTAAGTTCCCTAAAAGCTCAAGTTCAAGCTCTGACTACTGTTGTGTCTAAACTTTCAAGACCAAGAACTTCGCATTCAAATGAGTTGGTGGCAGCAGCAGATACATATTCTTACTATGAGGAGCCAACCATCGAGCAAACTTAG

Coding sequence (CDS)

ATGGCGCCTGCAGATGAAGTTGGAGCCTTCTTCCGTGATGACAGCGCCGCAACGCTGTCTTGTAGCACCATGGCGCTACAAACTTGCGCGTCCACGTTTCTCACAAAATTTTTCCCACCTGCCAAGACAGCTCAGCTTAGAACAGAGATTGTATCATTCAGGCAATACGATTATGAGCAACTATTTGAGTCCTGGGAGAGAACTATACTGGATGTTGCAGCTGGAGGCATATTACTATCCAAAACACTAGAGAATGCTTACATCTTACTGGAGAATATGGCGGCCAATAGCTTTCAATGGCCCCATGAGAGATCGAATGCCAAAAGAGTTGCTAGAATCTATGAAATCGACGAGGTAAGTTCCCTAAAAGCTCAAGTTCAAGCTCTGACTACTGTTGTGTCTAAACTTTCAAGACCAAGAACTTCGCATTCAAATGAGTTGGTGGCAGCAGCAGATACATATTCTTACTATGAGGAGCCAACCATCGAGCAAACTTAG

Protein sequence

MAPADEVGAFFRDDSAATLSCSTMALQTCASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWERTILDVAAGGILLSKTLENAYILLENMAANSFQWPHERSNAKRVARIYEIDEVSSLKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQT
Homology
BLAST of Moc11g28080 vs. NCBI nr
Match: XP_022157708.1 (uncharacterized protein LOC111024361 [Momordica charantia])

HSP 1 Score: 191.0 bits (484), Expect = 7.9e-45
Identity = 114/184 (61.96%), Postives = 123/184 (66.85%), Query Frame = 0

Query: 14  DSAATLSCSTMALQ--TCASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWE----- 73
           D A  L    ++LQ       FLT FFPPAKT QLRTEI SFR+YDYEQLFE WE     
Sbjct: 95  DDAIRLRLFPLSLQDKEMVQAFLTNFFPPAKTTQLRTEIRSFRKYDYEQLFEVWERYKEL 154

Query: 74  --------------------------RTILDVAAGGILLSKTLENAYILLENMAANSFQW 133
                                     RTILD AAGG LLS+T ENAYILL++MA NSFQW
Sbjct: 155 LRKCPQHGNLEWLQIQMFYNGLNGQTRTILDAAAGGTLLSRTPENAYILLKDMADNSFQW 214

Query: 134 PHERSNAKRVARIYEIDEVSSLKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEP 165
           P ERSNAK+VA +YEIDE+SSLKAQVQALT  VSKLS P TSHSNELVAA DTYSYY EP
Sbjct: 215 PSERSNAKKVAGMYEIDELSSLKAQVQALTNAVSKLSGPGTSHSNELVAATDTYSYY-EP 274

BLAST of Moc11g28080 vs. NCBI nr
Match: XP_023881727.1 (uncharacterized protein LOC111994101 [Quercus suber])

HSP 1 Score: 129.4 bits (324), Expect = 2.8e-26
Identity = 72/143 (50.35%), Postives = 96/143 (67.13%), Query Frame = 0

Query: 22  STMALQTCASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWERTILDVAAGGILLSK 81
           S  + Q  A   L KFFP AKTAQLR+EI  FRQ D+E L+++WERTI+D A+GG L+SK
Sbjct: 109 SITSWQDMAEKLLAKFFPSAKTAQLRSEIGQFRQNDFESLYKAWERTIVDAASGGTLMSK 168

Query: 82  TLENAYILLENMAANSFQWPHERSNAKRVARIYEIDEVSSLKAQVQALTTVVSKLSRPRT 141
           T E A  LLE MA+N++QWP ER+ AK+VA I+E++  ++L AQV +L+  VS L+  R 
Sbjct: 169 TAEGATSLLEEMASNNYQWPTERTMAKKVAGIHELEPFAALSAQVASLSHQVSALTTQRI 228

Query: 142 SHSNELVAAADTYSYYEEPTIEQ 165
             S E VAA+       E + EQ
Sbjct: 229 PQSAEFVAASSMTIPMNEASQEQ 251

BLAST of Moc11g28080 vs. NCBI nr
Match: XP_023903214.1 (uncharacterized protein LOC112015077 [Quercus suber])

HSP 1 Score: 120.9 bits (302), Expect = 1.0e-23
Identity = 76/174 (43.68%), Postives = 98/174 (56.32%), Query Frame = 0

Query: 22  STMALQTCASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWE--------------- 81
           S  + Q  A  FL KFFPPAKTAQLR+EI  FRQ D+E L+E+WE               
Sbjct: 109 SITSWQDMAEKFLAKFFPPAKTAQLRSEIGQFRQNDFESLYEAWERYKDLIRCCPQHGLP 168

Query: 82  ----------------RTILDVAAGGILLSKTLENAYILLENMAANSFQWPHERSNAKRV 141
                           RTI+D A+GG L+SKT E A  LLE MA+N++QWP ER+ AK+V
Sbjct: 169 DWLQVQMFYNGLNGQTRTIVDAASGGTLMSKTAEGATSLLEEMASNNYQWPTERTMAKKV 228

Query: 142 ARIYEIDEVSSLKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQ 165
           A I+E++  ++L AQV +L+  VS LS  R   S E VAA+       E + EQ
Sbjct: 229 AGIHELEPFAALSAQVASLSHQVSALSTQRIPQSAEYVAASSMTVPMNEASQEQ 282

BLAST of Moc11g28080 vs. NCBI nr
Match: XP_024030361.1 (uncharacterized protein LOC112094221 [Morus notabilis])

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-23
Identity = 70/166 (42.17%), Postives = 92/166 (55.42%), Query Frame = 0

Query: 30  ASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWE----------------------- 89
           A  FLTKFFPP+KTA LR+EIV FRQ D+E L+E+WE                       
Sbjct: 24  AQKFLTKFFPPSKTAHLRSEIVQFRQIDFEPLYEAWERFKELLRKCPQHGYEDWFQIQIF 83

Query: 90  --------RTILDVAAGGILLSKTLENAYILLENMAANSFQWPHERSNAKRVARIYEIDE 149
                   RTI+D A+GG++LSKT E A +LLE MA+N+ QWP ERS+ KR   ++EID 
Sbjct: 84  YNGRNGQTRTIIDAASGGMMLSKTYEEAELLLEEMASNNAQWPSERSSVKRAVGMHEIDL 143

Query: 150 VSSLKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQ 165
           + +  AQ+ ALT  +S+L+    + S E    A T    E    EQ
Sbjct: 144 LVTFSAQISALTNKISELTAKEATSSKETAMVASTSYIGEGGAAEQ 189

BLAST of Moc11g28080 vs. NCBI nr
Match: XP_023903608.1 (uncharacterized protein LOC112015434 [Quercus suber])

HSP 1 Score: 119.8 bits (299), Expect = 2.2e-23
Identity = 74/174 (42.53%), Postives = 100/174 (57.47%), Query Frame = 0

Query: 22  STMALQTCASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWE--------------- 81
           S  +LQ  A  FLT+FFPPAKTAQLR+EI  FRQ D+E L+E+WE               
Sbjct: 109 SITSLQDMAEKFLTEFFPPAKTAQLRSEIGQFRQNDFESLYEAWERYKYLIWRCPQHGLS 168

Query: 82  ----------------RTILDVAAGGILLSKTLENAYILLENMAANSFQWPHERSNAKRV 141
                           RTI+D A+G  L+SKT E A  LLE MA+N++QWP +R+ AK+V
Sbjct: 169 DWLQVQMFYNRLNGQTRTIVDAASGETLMSKTAEGATSLLEEMASNNYQWPTKRTMAKKV 228

Query: 142 ARIYEIDEVSSLKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQ 165
           ARI++++  ++L AQV +L+  VS L+  R   S E VAA+       E + EQ
Sbjct: 229 ARIHKLEPFAALSAQVASLSHQVSALTTQRIPQSAEYVAASSMTVLMNEASQEQ 282

BLAST of Moc11g28080 vs. ExPASy TrEMBL
Match: A0A6J1DU19 (uncharacterized protein LOC111024361 OS=Momordica charantia OX=3673 GN=LOC111024361 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.8e-45
Identity = 114/184 (61.96%), Postives = 123/184 (66.85%), Query Frame = 0

Query: 14  DSAATLSCSTMALQ--TCASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWE----- 73
           D A  L    ++LQ       FLT FFPPAKT QLRTEI SFR+YDYEQLFE WE     
Sbjct: 95  DDAIRLRLFPLSLQDKEMVQAFLTNFFPPAKTTQLRTEIRSFRKYDYEQLFEVWERYKEL 154

Query: 74  --------------------------RTILDVAAGGILLSKTLENAYILLENMAANSFQW 133
                                     RTILD AAGG LLS+T ENAYILL++MA NSFQW
Sbjct: 155 LRKCPQHGNLEWLQIQMFYNGLNGQTRTILDAAAGGTLLSRTPENAYILLKDMADNSFQW 214

Query: 134 PHERSNAKRVARIYEIDEVSSLKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEP 165
           P ERSNAK+VA +YEIDE+SSLKAQVQALT  VSKLS P TSHSNELVAA DTYSYY EP
Sbjct: 215 PSERSNAKKVAGMYEIDELSSLKAQVQALTNAVSKLSGPGTSHSNELVAATDTYSYY-EP 274

BLAST of Moc11g28080 vs. ExPASy TrEMBL
Match: A0A2I4G4Q3 (uncharacterized protein LOC109004712 OS=Juglans regia OX=51240 GN=LOC109004712 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.9e-21
Identity = 69/174 (39.66%), Postives = 94/174 (54.02%), Query Frame = 0

Query: 22  STMALQTCASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWE--------------- 81
           S  + Q  A  F  KFFPPAKT QLR+EI  F+Q D+E L+E+WE               
Sbjct: 63  SITSWQDMAEKFHAKFFPPAKTTQLRSEIGQFKQNDFESLYEAWEIYKDLIRRCPQHGLP 122

Query: 82  ----------------RTILDVAAGGILLSKTLENAYILLENMAANSFQWPHERSNAKRV 141
                           RTI+D  +GG L+ KT+E A  LLE MA+N++QWP ER+ AK+V
Sbjct: 123 DWLQVQMFYNGLNGHTRTIVDDTSGGTLMLKTIEGATYLLEEMASNNYQWPIERTMAKKV 182

Query: 142 ARIYEIDEVSSLKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQ 165
           ARI+E++ +++L AQV  L+  +S L+  R   S E V A        E + EQ
Sbjct: 183 ARIHELEPLAALSAQVATLSHQISALTTQRIPQSAEYVVATSMTVLSNEVSQEQ 236

BLAST of Moc11g28080 vs. ExPASy TrEMBL
Match: A0A2I4FP56 (uncharacterized protein LOC109000837 OS=Juglans regia OX=51240 GN=LOC109000837 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.6e-19
Identity = 63/163 (38.65%), Postives = 90/163 (55.21%), Query Frame = 0

Query: 30  ASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWER---------------------- 89
           A  FL KFFPPAKTAQL++EI   +Q D+E L+++WER                      
Sbjct: 2   AEKFLAKFFPPAKTAQLKSEIGQLKQNDFESLYKAWERYKDLIRCCPQHGLPDWLQVQMF 61

Query: 90  ------TILDVAAGGILLSKTLENAYILLENMAANSFQWPHERSNAKRVARIYEIDEVSS 149
                 T +D  +GGIL+SKT E    LLE MA++++QWP +R+ AK+VA I+E++ +++
Sbjct: 62  YNGQTQTTVDATSGGILMSKTAEGVTYLLEEMASSNYQWPTKRTRAKKVAGIHELEPLAA 121

Query: 150 LKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQ 165
           + AQV  L+  +S L   R   S E VAA        E + EQ
Sbjct: 122 ISAQVATLSHQISALITQRIPQSAEYVAATSMTIPSNEASQEQ 164

BLAST of Moc11g28080 vs. ExPASy TrEMBL
Match: A0A6P9E7J9 (uncharacterized protein LOC118344238 OS=Juglans regia OX=51240 GN=LOC118344238 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.1e-19
Identity = 65/163 (39.88%), Postives = 88/163 (53.99%), Query Frame = 0

Query: 33  FLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWER------------------------- 92
           FL KFFPPAKTAQLR+EI  F+Q D+E L+E+ ER                         
Sbjct: 5   FLAKFFPPAKTAQLRSEICQFKQNDFESLYEARERYKDLIRHCPQHGLPDWLQVQMFCNG 64

Query: 93  ------TILDVAAGGILLSKTLENAYILLENMAANSFQWPHERSNAKRVARIYEIDEVSS 152
                 TI+DVA GG L+SKT+E A  LLE MA+N+ QWP ER+  K++  I+E++ +++
Sbjct: 65  LNGQTQTIVDVATGGTLMSKTIEGATYLLEEMASNNNQWPTERTITKKIVGIHELESLAA 124

Query: 153 LKAQVQALTTVVSKLSRPRTSHSNELVAAADTYSYYEEPTIEQ 165
           L AQ   L+  +S L+  R   S E V A        E + EQ
Sbjct: 125 LSAQAATLSHQISVLTTQRMPQSAEYVVATSMTVPSNEASQEQ 167

BLAST of Moc11g28080 vs. ExPASy TrEMBL
Match: A0A6J0ZYV0 (uncharacterized protein LOC110413413 OS=Herrania umbratica OX=108875 GN=LOC110413413 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 8.1e-19
Identity = 63/163 (38.65%), Postives = 87/163 (53.37%), Query Frame = 0

Query: 30  ASTFLTKFFPPAKTAQLRTEIVSFRQYDYEQLFESWER---------------------- 89
           A  FL KFFPPAKTA++R +I SF Q+D E L+E+WER                      
Sbjct: 164 AQKFLAKFFPPAKTAKMRNDITSFIQFDGESLYEAWERFKELLRRCPHHGIPDWLQVQTF 223

Query: 90  ---------TILDVAAGGILLSKTLENAYILLENMAANSFQWPHERSNAKRVARIYEIDE 149
                    TI+D AAGG L+SK   +AY LLE MA+N++QWP ERS +++    YEID 
Sbjct: 224 YNGLVGSIKTIIDAAAGGALMSKNAVDAYNLLEEMASNNYQWPSERSGSRKAVGAYEIDA 283

Query: 150 VSSLKAQVQALTTVVSKLSRPRTSHSNELV-AAADTYSYYEEP 161
           + +L  QV AL+  +  L      +S  +     D++SY + P
Sbjct: 284 LGTLTTQVAALSKKLDTLGVHAVQNSLVVCEMCGDSHSYDQCP 326

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022157708.17.9e-4561.96uncharacterized protein LOC111024361 [Momordica charantia][more]
XP_023881727.12.8e-2650.35uncharacterized protein LOC111994101 [Quercus suber][more]
XP_023903214.11.0e-2343.68uncharacterized protein LOC112015077 [Quercus suber][more]
XP_024030361.11.7e-2342.17uncharacterized protein LOC112094221 [Morus notabilis][more]
XP_023903608.12.2e-2342.53uncharacterized protein LOC112015434 [Quercus suber][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DU193.8e-4561.96uncharacterized protein LOC111024361 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A2I4G4Q33.9e-2139.66uncharacterized protein LOC109004712 OS=Juglans regia OX=51240 GN=LOC109004712 P... [more]
A0A2I4FP561.6e-1938.65uncharacterized protein LOC109000837 OS=Juglans regia OX=51240 GN=LOC109000837 P... [more]
A0A6P9E7J92.1e-1939.88uncharacterized protein LOC118344238 OS=Juglans regia OX=51240 GN=LOC118344238 P... [more]
A0A6J0ZYV08.1e-1938.65uncharacterized protein LOC110413413 OS=Herrania umbratica OX=108875 GN=LOC11041... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc11g28080.1Moc11g28080.1mRNA