Moc11g28040 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc11g28040
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon opus
Locationchr11: 20470979 .. 20471798 (+)
RNA-Seq ExpressionMoc11g28040
SyntenyMoc11g28040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGACCAACTTTCTACTAGTGAATGGTTGAATCCAAGATCAGCTATGGGTGAGAATTCAAGAGGAATTTATGATGATGACATGCTAACTTTGATCAACACGAAAATCTCAAATCTGGCGGACATGATGATGAAGAATATGTCTAATGCTGGAGCATCTATTGCCAGAGCAGGAGTTAGCAGTGTCCAAGCAATTTCATGCTCCTACTGTTAAGGAGAGAACCACTTTGATCTCTGCCCATGGAATCCTACAAATCAAAATAATTCTCACTCCAACATGTACAACTCGTGGTGGGGGCAACTCCCAAATTTTGGATGGGGAGGAAACCAATGTGGACAGGGTCAGTCAGGACAATATAATGCTCCAACATTCCAACAAGAAAACTTTTCCCTAGGATTTTTTGGAGTTTGAGCAACATCATCCTGCCAAGCAAGCTGCAAGTTCATCAAATTCTTTGGAAAGCCTGATTAAAGCTTACATGGCCAAGAATGAGGATACCATTCAAAATCAAGCTGCATTAATTCAGAGCCAAGCAGCGTCATTAAGGAATTTGGAAGTTCATATGGGGCAAGTTGTAGAAGAACTAAGAAAGCGACCGCATGAAGCTCTCTCGAGCGATACTGAGACACTCAAATTGGAGGAGAAAGAACAAACTGAAACAGTAATGAGTTGCAACACATTGCTTCCACCATATCCCACCCTTCTAGAGAAAGAAAGTGCTCAAGTCAATGCAGAAATTAAAATTGTGAGTCAAATTAAAGAAACTACAAATGAGCTGCAACATAAGAATATTCATAAGAGCATTGCTAGAGCATAG

mRNA sequence

ATGGAAGACCAACTTTCTACTAGTGAATGGTTGAATCCAAGATCAGCTATGGGTGAGAATTCAAGAGGAATTTATGATGATGACATGCTAACTTTGATCAACACGAAAATCTCAAATCTGGCGGACATGATGATGAAGAATATGTCTAATGCTGGAGCATCTATTGCCAGAGCAGGAGATTTTTTGGAGTTTGAGCAACATCATCCTGCCAAGCAAGCTGCAAGTTCATCAAATTCTTTGGAAAGCCTGATTAAAGCTTACATGGCCAAGAATGAGGATACCATTCAAAATCAAGCTGCATTAATTCAGAGCCAAGCAGCGTCATTAAGGAATTTGGAAGTTCATATGGGGCAAGTTGTAGAAGAACTAAGAAAGCGACCGCATGAAGCTCTCTCGAGCGATACTGAGACACTCAAATTGGAGGAGAAAGAACAAACTGAAACAGTAATGAGTTGCAACACATTGCTTCCACCATATCCCACCCTTCTAGAGAAAGAAAGTGCTCAAGTCAATGCAGAAATTAAAATTGTGAGTCAAATTAAAGAAACTACAAATGAGCTGCAACATAAGAATATTCATAAGAGCATTGCTAGAGCATAG

Coding sequence (CDS)

ATGGAAGACCAACTTTCTACTAGTGAATGGTTGAATCCAAGATCAGCTATGGGTGAGAATTCAAGAGGAATTTATGATGATGACATGCTAACTTTGATCAACACGAAAATCTCAAATCTGGCGGACATGATGATGAAGAATATGTCTAATGCTGGAGCATCTATTGCCAGAGCAGGAGATTTTTTGGAGTTTGAGCAACATCATCCTGCCAAGCAAGCTGCAAGTTCATCAAATTCTTTGGAAAGCCTGATTAAAGCTTACATGGCCAAGAATGAGGATACCATTCAAAATCAAGCTGCATTAATTCAGAGCCAAGCAGCGTCATTAAGGAATTTGGAAGTTCATATGGGGCAAGTTGTAGAAGAACTAAGAAAGCGACCGCATGAAGCTCTCTCGAGCGATACTGAGACACTCAAATTGGAGGAGAAAGAACAAACTGAAACAGTAATGAGTTGCAACACATTGCTTCCACCATATCCCACCCTTCTAGAGAAAGAAAGTGCTCAAGTCAATGCAGAAATTAAAATTGTGAGTCAAATTAAAGAAACTACAAATGAGCTGCAACATAAGAATATTCATAAGAGCATTGCTAGAGCATAG

Protein sequence

MEDQLSTSEWLNPRSAMGENSRGIYDDDMLTLINTKISNLADMMMKNMSNAGASIARAGDFLEFEQHHPAKQAASSSNSLESLIKAYMAKNEDTIQNQAALIQSQAASLRNLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTETVMSCNTLLPPYPTLLEKESAQVNAEIKIVSQIKETTNELQHKNIHKSIARA
Homology
BLAST of Moc11g28040 vs. NCBI nr
Match: XP_022158598.1 (uncharacterized protein LOC111025053 [Momordica charantia])

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-09
Identity = 66/201 (32.84%), Postives = 96/201 (47.76%), Query Frame = 0

Query: 6   STSEWLNPRSAMGENSRGIYDDDMLTLINTKISNLADMMMKNMS---------------- 65
           S   W + R+  G++S+ + + +  T +N+KI  L D+  +N S                
Sbjct: 145 SNHSWSDHRAIEGKSSKELVESESYTTLNSKIEILTDLNNRNTSYSNTYNPRLRNHPNFG 204

Query: 66  ---NAG---ASIARAGDFLEFEQHHPA----------KQAASSSNSLESLIKAYMAKNED 125
              N G     I+ A  F +   + P            Q+  S  SLE+++K YMA N+ 
Sbjct: 205 WSGNQGGHNTGISNAPTFQQKVSYPPGFAYQGQMVEHNQSKGSITSLENIMKQYMANND- 264

Query: 126 TIQNQAALIQSQAASLRNLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTE--TVMS 171
                 A +QSQAASLRNLE+ +GQ+  +L+ RP  AL SDTE  K + KEQ    T+ S
Sbjct: 265 ------ATVQSQAASLRNLELQVGQLAMDLKSRPVGALPSDTEVPKRDSKEQCNALTLRS 324

BLAST of Moc11g28040 vs. NCBI nr
Match: XP_022157438.1 (uncharacterized protein LOC111024136 [Momordica charantia])

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-09
Identity = 58/189 (30.69%), Postives = 92/189 (48.68%), Query Frame = 0

Query: 10  WLNPRSAMGENSRGIYDDDMLTLINTKISNLADMMMKNM---SNAGASIARAG------- 69
           W +P++  G++S+ + + +  T +N+KI NL D++M+++   S AGAS+           
Sbjct: 125 WFDPKAVQGKSSKALVESESYTTLNSKIENLTDLVMRSITQQSPAGASVGMXNVNQIQGI 184

Query: 70  --DFLEFEQHH-----------------------PA----KQAASSSNSLESLIKAYMAK 129
              F E + H+                       PA    +Q+  S  SLE L+K YMA 
Sbjct: 185 SCSFYEGDHHYNNCPGNPESSGNQGGHNAGTSNAPAFQQKRQSEGSFASLEKLMKQYMAN 244

Query: 130 NEDTIQNQAALIQSQAASLRNLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTETV- 159
           N+ T++        Q + LRNLE+ +GQ+  +L  RP  AL SDTE  K + KEQ + + 
Sbjct: 245 NDATVER-------QVSPLRNLELQVGQLATDLNSRPIGALPSDTEVPKRDGKEQCKALT 304

BLAST of Moc11g28040 vs. NCBI nr
Match: XP_023522102.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111785979 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.6 bits (174), Expect = 8.4e-09
Identity = 51/141 (36.17%), Postives = 76/141 (53.90%), Query Frame = 0

Query: 9   EWLNPRSAMGENSRGIYDDDMLTLINTKISNLADMMMKNMSNAGASIARAGDFLEFEQHH 68
           +W + RS  G  +RG+ + D L+ IN +++++ +++         ++A   D +     H
Sbjct: 45  QWADVRSNPGRKTRGVLEVDALSSINAQLASVTNILQ--------NLALGQDSMIKAPVH 104

Query: 69  PAKQAASSSNSLESLIKAYMAKNEDTIQNQAALIQSQAASLRNLEVHMGQVVEELRKRPH 128
            A     ++    SLIK YMAKN+       A IQSQ ASLRNLEV +GQ+  ELR RP 
Sbjct: 105 TAAVINQTAAESCSLIKEYMAKND-------AAIQSQQASLRNLEVQVGQLANELRNRPL 164

Query: 129 EALSSDTETLKLEEKEQTETV 150
             L +DTE  K E  EQ + +
Sbjct: 165 SKLPADTEMPKREGMEQCQAI 170

BLAST of Moc11g28040 vs. NCBI nr
Match: XP_024023163.1 (uncharacterized protein LOC112092116 [Morus notabilis])

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-08
Identity = 46/107 (42.99%), Postives = 61/107 (57.01%), Query Frame = 0

Query: 68  HPAKQAASSSNSLESLIKAYMAKNEDTIQNQAALIQSQAASLRNLEVHMGQVVEELRKRP 127
           HP  Q A   +S+E L+K YMAKN+  IQNQ+ALIQ+QAASLRNLE  +GQ+   L   P
Sbjct: 170 HPRHQPAEQHSSMEHLLKEYMAKNDAIIQNQSALIQNQAASLRNLENQVGQLANALTSHP 229

Query: 128 HEALSSDTETLKLEEKEQTETVMSCNTLL--------PPYPTLLEKE 167
             AL S+T+  + EE     T     +L         PP+P   +K+
Sbjct: 230 TGALPSNTKDPRREEPTAKHTPTLQQSLAKKQNDRPPPPFPQRFQKQ 276

BLAST of Moc11g28040 vs. NCBI nr
Match: XP_017239618.1 (PREDICTED: uncharacterized protein LOC108212402 [Daucus carota subsp. sativus])

HSP 1 Score: 70.1 bits (170), Expect = 2.5e-08
Identity = 44/101 (43.56%), Postives = 58/101 (57.43%), Query Frame = 0

Query: 49  SNAGASIARAGDFLEFEQHHPAKQAASSSNSLESLIKAYMAKNEDTIQNQAALIQSQAAS 108
           SN GA+   +      +      Q A  SNSLE+++K Y+ KNE +     AL+QSQAAS
Sbjct: 377 SNQGANFGTSNGVHHQDYPPGFSQQAPQSNSLENMLKEYIIKNEASRSQTEALVQSQAAS 436

Query: 109 LRNLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTETV 150
           LRNLE  +GQ+  ELR RPH  L SDTE  K +  E  + +
Sbjct: 437 LRNLENQVGQLTNELRNRPHGTLPSDTEKPKGDGNEHCKAM 477

BLAST of Moc11g28040 vs. ExPASy TrEMBL
Match: A0A6J1DWK1 (uncharacterized protein LOC111025053 OS=Momordica charantia OX=3673 GN=LOC111025053 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.8e-10
Identity = 66/201 (32.84%), Postives = 96/201 (47.76%), Query Frame = 0

Query: 6   STSEWLNPRSAMGENSRGIYDDDMLTLINTKISNLADMMMKNMS---------------- 65
           S   W + R+  G++S+ + + +  T +N+KI  L D+  +N S                
Sbjct: 145 SNHSWSDHRAIEGKSSKELVESESYTTLNSKIEILTDLNNRNTSYSNTYNPRLRNHPNFG 204

Query: 66  ---NAG---ASIARAGDFLEFEQHHPA----------KQAASSSNSLESLIKAYMAKNED 125
              N G     I+ A  F +   + P            Q+  S  SLE+++K YMA N+ 
Sbjct: 205 WSGNQGGHNTGISNAPTFQQKVSYPPGFAYQGQMVEHNQSKGSITSLENIMKQYMANND- 264

Query: 126 TIQNQAALIQSQAASLRNLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTE--TVMS 171
                 A +QSQAASLRNLE+ +GQ+  +L+ RP  AL SDTE  K + KEQ    T+ S
Sbjct: 265 ------ATVQSQAASLRNLELQVGQLAMDLKSRPVGALPSDTEVPKRDSKEQCNALTLRS 324

BLAST of Moc11g28040 vs. ExPASy TrEMBL
Match: A0A6J1DTD1 (uncharacterized protein LOC111024136 OS=Momordica charantia OX=3673 GN=LOC111024136 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.3e-10
Identity = 58/189 (30.69%), Postives = 92/189 (48.68%), Query Frame = 0

Query: 10  WLNPRSAMGENSRGIYDDDMLTLINTKISNLADMMMKNM---SNAGASIARAG------- 69
           W +P++  G++S+ + + +  T +N+KI NL D++M+++   S AGAS+           
Sbjct: 125 WFDPKAVQGKSSKALVESESYTTLNSKIENLTDLVMRSITQQSPAGASVGMXNVNQIQGI 184

Query: 70  --DFLEFEQHH-----------------------PA----KQAASSSNSLESLIKAYMAK 129
              F E + H+                       PA    +Q+  S  SLE L+K YMA 
Sbjct: 185 SCSFYEGDHHYNNCPGNPESSGNQGGHNAGTSNAPAFQQKRQSEGSFASLEKLMKQYMAN 244

Query: 130 NEDTIQNQAALIQSQAASLRNLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTETV- 159
           N+ T++        Q + LRNLE+ +GQ+  +L  RP  AL SDTE  K + KEQ + + 
Sbjct: 245 NDATVER-------QVSPLRNLELQVGQLATDLNSRPIGALPSDTEVPKRDGKEQCKALT 304

BLAST of Moc11g28040 vs. ExPASy TrEMBL
Match: A0A6J1DAE9 (uncharacterized protein LOC111018514 OS=Momordica charantia OX=3673 GN=LOC111018514 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.8e-07
Identity = 36/84 (42.86%), Postives = 54/84 (64.29%), Query Frame = 0

Query: 66  QHHPAKQAASSSNSLESLIKAYMAKNEDTIQNQAALIQSQAASLRNLEVHMGQVVEELRK 125
           Q  P++ A +++ SLE++ K YMA+N+  +Q+Q A IQ+QAA +RNLEV MGQ   +L+ 
Sbjct: 227 QRTPSQPAHNNNTSLENMFKEYMARNDALMQSQNATIQTQAAXMRNLEVQMGQXANDLKA 286

Query: 126 RPHEALSSDTETLKLEEKEQTETV 150
           RP  +    TE  K +  EQ + V
Sbjct: 287 RPQGSFPGHTEVXKRDGXEQCKAV 310

BLAST of Moc11g28040 vs. ExPASy TrEMBL
Match: A0A6J1GJ68 (uncharacterized protein LOC111454344 OS=Cucurbita moschata OX=3662 GN=LOC111454344 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.0e-07
Identity = 40/75 (53.33%), Postives = 50/75 (66.67%), Query Frame = 0

Query: 75  SSSNSLESLIKAYMAKNEDTIQNQAALIQSQAASLRNLEVHMGQVVEELRKRPHEALSSD 134
           +S  S+ESLIK YMAKN+        +IQSQ ASL+NLEV +GQ+  ELR RP   L +D
Sbjct: 37  TSGTSIESLIKEYMAKND-------VVIQSQQASLQNLEVQVGQLATELRNRPLGKLPAD 96

Query: 135 TETLKLEEKEQTETV 150
           TET K E KEQ + +
Sbjct: 97  TETPKREGKEQCQAI 104

BLAST of Moc11g28040 vs. ExPASy TrEMBL
Match: A0A5B6VWJ0 (Retroelement pol polyprotein-like OS=Gossypium australe OX=47621 GN=EPI10_024080 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-06
Identity = 52/127 (40.94%), Postives = 67/127 (52.76%), Query Frame = 0

Query: 49  SNAGASIA------RAGDFLEFEQHHPAKQAASSSNSLESLIKAYMAKNEDTIQNQAALI 108
           SN GA  +      R      F Q       A +SNSLESL+K YMAKN+       ALI
Sbjct: 244 SNQGAGTSTVYTQPRPTQLPNFPQQVQKLVQAKASNSLESLLKTYMAKND-------ALI 303

Query: 109 QSQAASLRNLEVHMGQVVEELRKRPHEALSSDTETLKLEEKEQTETV-MSCNTLLPPYPT 168
           QSQAA+L+NLE  +GQ+  ELR R   AL SDTE  +   KE  + + +    ++ P   
Sbjct: 304 QSQAATLKNLENQVGQLATELRNRLQGALPSDTENPRNLGKEHCKALTLRSEKIIEPNTV 363

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158598.11.0e-0932.84uncharacterized protein LOC111025053 [Momordica charantia][more]
XP_022157438.11.3e-0930.69uncharacterized protein LOC111024136 [Momordica charantia][more]
XP_023522102.18.4e-0936.17LOW QUALITY PROTEIN: uncharacterized protein LOC111785979 [Cucurbita pepo subsp.... [more]
XP_024023163.11.1e-0842.99uncharacterized protein LOC112092116 [Morus notabilis][more]
XP_017239618.12.5e-0843.56PREDICTED: uncharacterized protein LOC108212402 [Daucus carota subsp. sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DWK14.8e-1032.84uncharacterized protein LOC111025053 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DTD16.3e-1030.69uncharacterized protein LOC111024136 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1DAE93.8e-0742.86uncharacterized protein LOC111018514 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J1GJ685.0e-0753.33uncharacterized protein LOC111454344 OS=Cucurbita moschata OX=3662 GN=LOC1114543... [more]
A0A5B6VWJ01.1e-0640.94Retroelement pol polyprotein-like OS=Gossypium australe OX=47621 GN=EPI10_024080... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc11g28040.1Moc11g28040.1mRNA